RNA–Protein interactions for RNA: ENST00000291074.9

VPS53-201, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 2,656 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-201ENST00000291074 GDPD1Q8N9F7 314 aa18.46■□□□□ 0.55
VPS53-201ENST00000291074 TSTD1Q8NFU3 115 aa18.46■□□□□ 0.55
VPS53-201ENST00000291074 OR5W2Q8NH69 310 aa18.46■□□□□ 0.55
VPS53-201ENST00000291074 TGM7Q96PF1 710 aa18.46■□□□□ 0.55
VPS53-201ENST00000291074 ST6GALNAC1Q9NSC7 600 aaPredicted RBP18.46■□□□□ 0.55
VPS53-201ENST00000291074 RBMX2Q9Y388 322 aaKnown RBP18.46■□□□□ 0.55
VPS53-201ENST00000291074 OR10H1Q9Y4A9 318 aa18.46■□□□□ 0.55
VPS53-201ENST00000291074 SRPX2O60687 465 aaPredicted RBP18.46■□□□□ 0.54
VPS53-201ENST00000291074 PRAMEF2O60811 474 aa18.46■□□□□ 0.54
VPS53-201ENST00000291074 NR4A2P43354 598 aa18.46■□□□□ 0.54
VPS53-201ENST00000291074 IGLV3-21P80748 117 aaPredicted RBP18.46■□□□□ 0.54
VPS53-201ENST00000291074 ZNF85Q03923 595 aa18.46■□□□□ 0.54
VPS53-201ENST00000291074 ZNF595Q8IYB9 648 aa18.46■□□□□ 0.54
VPS53-201ENST00000291074 LSMEM1Q8N8F7 131 aa18.46■□□□□ 0.54
VPS53-201ENST00000291074 OR51L1Q8NGJ5 315 aa18.46■□□□□ 0.54
VPS53-201ENST00000291074 OR5M3Q8NGP4 307 aa18.46■□□□□ 0.54
VPS53-201ENST00000291074 C4orf36Q96KX1 117 aa18.46■□□□□ 0.54
VPS53-201ENST00000291074 ERMAPQ96PL5 475 aaPredicted RBP18.46■□□□□ 0.54
VPS53-201ENST00000291074 Q9N2J8 555 aa18.46■□□□□ 0.54
VPS53-201ENST00000291074 TRIM36Q9NQ86 728 aa18.46■□□□□ 0.54
VPS53-201ENST00000291074 SOHLH2Q9NX45 425 aa18.46■□□□□ 0.54
VPS53-201ENST00000291074 J3QLW9 94 aa18.45■□□□□ 0.54
VPS53-201ENST00000291074 CCNKO75909 580 aa18.45■□□□□ 0.54
VPS53-201ENST00000291074 CSF2P04141 144 aa18.45■□□□□ 0.54
VPS53-201ENST00000291074 IFNA16P05015 189 aa18.45■□□□□ 0.54
VPS53-201ENST00000291074 ZNF19P17023 458 aa18.45■□□□□ 0.54
VPS53-201ENST00000291074 HTR3AP46098 478 aa18.45■□□□□ 0.54
VPS53-201ENST00000291074 OR12D2P58182 307 aa18.45■□□□□ 0.54
VPS53-201ENST00000291074 SLC3A1Q07837 685 aa18.45■□□□□ 0.54
VPS53-201ENST00000291074 ASAH1Q13510 395 aa18.45■□□□□ 0.54
VPS53-201ENST00000291074 ZNF141Q15928 474 aa18.45■□□□□ 0.54
VPS53-201ENST00000291074 RTL4Q6ZR62 310 aa18.45■□□□□ 0.54
VPS53-201ENST00000291074 SYT13Q7L8C5 426 aa18.45■□□□□ 0.54
VPS53-201ENST00000291074 BCORP1Q8N888 145 aa18.45■□□□□ 0.54
VPS53-201ENST00000291074 GATSQ8NAP1 163 aa18.45■□□□□ 0.54
VPS53-201ENST00000291074 C17orf47Q8NEP4 570 aa18.45■□□□□ 0.54
VPS53-201ENST00000291074 OR52E2Q8NGJ4 325 aa18.45■□□□□ 0.54
VPS53-201ENST00000291074 OR4K13Q8NH42 304 aa18.45■□□□□ 0.54
VPS53-201ENST00000291074 SMPDL3BQ92485 455 aa18.45■□□□□ 0.54
VPS53-201ENST00000291074 TCTN2Q96GX1 697 aa18.45■□□□□ 0.54
VPS53-201ENST00000291074 SLC38A3Q99624 504 aa18.45■□□□□ 0.54
VPS53-201ENST00000291074 OR10A5Q9H207 317 aa18.45■□□□□ 0.54
VPS53-201ENST00000291074 GRIP1Q9Y3R0 1128 aa18.45■□□□□ 0.54
VPS53-201ENST00000291074 MAU2Q9Y6X3 613 aa18.45■□□□□ 0.54
VPS53-201ENST00000291074 SEC16AO15027 2179 aa18.45■□□□□ 0.54
VPS53-201ENST00000291074 ABCA7Q8IZY2 2146 aa18.45■□□□□ 0.54
VPS53-201ENST00000291074 IGHV5-51A0A0C4DH38 117 aa18.45■□□□□ 0.54
VPS53-201ENST00000291074 MAGEB4O15481 346 aaPredicted RBP18.45■□□□□ 0.54
VPS53-201ENST00000291074 PEPDP12955 493 aa18.45■□□□□ 0.54
VPS53-201ENST00000291074 GLULP15104 373 aa18.45■□□□□ 0.54
VPS53-201ENST00000291074 HK1P19367 917 aa18.45■□□□□ 0.54
VPS53-201ENST00000291074 IGFBP4P22692 258 aa18.45■□□□□ 0.54
VPS53-201ENST00000291074 SLC6A6P31641 620 aa18.45■□□□□ 0.54
VPS53-201ENST00000291074 MLLT3P42568 568 aaPredicted RBP18.45■□□□□ 0.54
VPS53-201ENST00000291074 BDH1Q02338 343 aa18.45■□□□□ 0.54
VPS53-201ENST00000291074 B3GAT2Q9NPZ5 323 aa18.45■□□□□ 0.54
VPS53-201ENST00000291074 RPS6KB2Q9UBS0 482 aa18.45■□□□□ 0.54
VPS53-201ENST00000291074 CLDN4O14493 209 aa18.44■□□□□ 0.54
VPS53-201ENST00000291074 PLA2G10O15496 165 aa18.44■□□□□ 0.54
VPS53-201ENST00000291074 NSA2O95478 260 aaKnown RBP18.44■□□□□ 0.54
VPS53-201ENST00000291074 SHC1P29353 583 aa18.44■□□□□ 0.54
VPS53-201ENST00000291074 RBM34P42696 430 aaKnown RBP18.44■□□□□ 0.54
VPS53-201ENST00000291074 GABRA4P48169 554 aa18.44■□□□□ 0.54
VPS53-201ENST00000291074 ATP12AP54707 1039 aa18.44■□□□□ 0.54
VPS53-201ENST00000291074 RSBN1Q5VWQ0 802 aaPredicted RBP18.44■□□□□ 0.54
VPS53-201ENST00000291074 FAAH2Q6GMR7 532 aa18.44■□□□□ 0.54
VPS53-201ENST00000291074 ULK3Q6PHR2 472 aa18.44■□□□□ 0.54
VPS53-201ENST00000291074 LINC00114Q6XXX2 140 aa18.44■□□□□ 0.54
VPS53-201ENST00000291074 RAB43Q86YS6 212 aa18.44■□□□□ 0.54
VPS53-201ENST00000291074 EFHD2Q96C19 240 aaPredicted RBP18.44■□□□□ 0.54
VPS53-201ENST00000291074 ZMYND19Q96E35 227 aaPredicted RBP18.44■□□□□ 0.54
VPS53-201ENST00000291074 NDC1Q9BTX1 674 aa18.44■□□□□ 0.54
VPS53-201ENST00000291074 SPRTNQ9H040 489 aaPredicted RBP18.44■□□□□ 0.54
VPS53-201ENST00000291074 PPP1R3EQ9H7J1 279 aa18.44■□□□□ 0.54
VPS53-201ENST00000291074 ADAM18Q9Y3Q7 739 aa18.44■□□□□ 0.54
VPS53-201ENST00000291074 CHURC1-FNTBB4DL54 471 aa18.44■□□□□ 0.54
VPS53-201ENST00000291074 MCIDASD6RGH6 385 aa18.44■□□□□ 0.54
VPS53-201ENST00000291074 CSTAP01040 98 aa18.44■□□□□ 0.54
VPS53-201ENST00000291074 MT-ND5P03915 603 aa18.44■□□□□ 0.54
VPS53-201ENST00000291074 ACVR1BP36896 505 aa18.44■□□□□ 0.54
VPS53-201ENST00000291074 FASLGP48023 281 aa18.44■□□□□ 0.54
VPS53-201ENST00000291074 FNTBP49356 437 aa18.44■□□□□ 0.54
VPS53-201ENST00000291074 ZNF800Q2TB10 664 aaPredicted RBP eCLIP18.44■□□□□ 0.54
VPS53-201ENST00000291074 NKAIN2Q5VXU1 208 aa18.44■□□□□ 0.54
VPS53-201ENST00000291074 OR5J2Q8NH18 312 aa18.44■□□□□ 0.54
VPS53-201ENST00000291074 OR51Q1Q8NH59 317 aa18.44■□□□□ 0.54
VPS53-201ENST00000291074 CHAC2Q8WUX2 184 aa18.44■□□□□ 0.54
VPS53-201ENST00000291074 CLIP3Q96DZ5 547 aa18.44■□□□□ 0.54
VPS53-201ENST00000291074 SLC22A4Q9H015 551 aa18.44■□□□□ 0.54
VPS53-201ENST00000291074 SPAG17Q6Q759 2223 aa18.44■□□□□ 0.54
VPS53-201ENST00000291074 ASXL3Q9C0F0 2248 aa18.43■□□□□ 0.54
VPS53-201ENST00000291074 A8MV72 311 aaPredicted RBP18.43■□□□□ 0.54
VPS53-201ENST00000291074 IMPA2O14732 288 aa18.43■□□□□ 0.54
VPS53-201ENST00000291074 GSTT2P0CG29 244 aa18.43■□□□□ 0.54
VPS53-201ENST00000291074 GSTT2BP0CG30 244 aa18.43■□□□□ 0.54
VPS53-201ENST00000291074 HIST1H1CP16403 213 aaKnown RBP18.43■□□□□ 0.54
VPS53-201ENST00000291074 IL18Q14116 193 aa18.43■□□□□ 0.54
VPS53-201ENST00000291074 KCNAB1Q14722 419 aa18.43■□□□□ 0.54
VPS53-201ENST00000291074 CCDC92Q53HC0 331 aaPredicted RBP18.43■□□□□ 0.54
VPS53-201ENST00000291074 IDNKQ5T6J7 187 aa18.43■□□□□ 0.54
Retrieved 100 of 20,778 RNA–protein pairs in 19.3 ms