RNA–Protein interactions for RNA: ENST00000642137.1

LINC00339-213, long intergenic non-protein coding RNA 339, human

BASIC

Gene LINC00339, Length 222 nt, Biotype transcribed processed pseudogene, Subcellular localisation Cytosol, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
LINC00339-213	ENST00000642137	TAAR6	Q96RI8	345 aa		11.17	□□□□□ -0.62
LINC00339-213	ENST00000642137	ZNF703	Q9H7S9	590 aa	Predicted RBP	11.17	□□□□□ -0.62
LINC00339-213	ENST00000642137	ZDHHC11	Q9H8X9	412 aa		11.17	□□□□□ -0.62
LINC00339-213	ENST00000642137	C12orf10	Q9HB07	376 aa		11.17	□□□□□ -0.62
LINC00339-213	ENST00000642137	RPS6KB2	Q9UBS0	482 aa		11.17	□□□□□ -0.62
LINC00339-213	ENST00000642137	DKKL1	Q9UK85	242 aa		11.17	□□□□□ -0.62
LINC00339-213	ENST00000642137	ACAD8	Q9UKU7	415 aa		11.17	□□□□□ -0.62
LINC00339-213	ENST00000642137	A4GNT	Q9UNA3	340 aa		11.17	□□□□□ -0.62
LINC00339-213	ENST00000642137	VDAC3	Q9Y277	283 aa		11.17	□□□□□ -0.62
LINC00339-213	ENST00000642137	AP4S1	Q9Y587	144 aa		11.17	□□□□□ -0.62
LINC00339-213	ENST00000642137	LAMA5	O15230	3695 aa		11.16	□□□□□ -0.62
LINC00339-213	ENST00000642137	MAP1B	P46821	2468 aa	Known RBP	11.16	□□□□□ -0.62
LINC00339-213	ENST00000642137	CACNA1G	O43497	2377 aa		11.16	□□□□□ -0.62
LINC00339-213	ENST00000642137		A0A0B4J2E0	115 aa		11.16	□□□□□ -0.62
LINC00339-213	ENST00000642137		A0A1B0GWA3	101 aa		11.16	□□□□□ -0.62
LINC00339-213	ENST00000642137		A0A1B0GX12	115 aa		11.16	□□□□□ -0.62
LINC00339-213	ENST00000642137	C7orf72	A4D263	438 aa		11.16	□□□□□ -0.62
LINC00339-213	ENST00000642137	TRAPPC13	A5PLN9	417 aa		11.16	□□□□□ -0.62
LINC00339-213	ENST00000642137	CPSF4L	A6NMK7	179 aa	Known RBP	11.16	□□□□□ -0.62
LINC00339-213	ENST00000642137	FAM166B	A8MTA8	275 aa		11.16	□□□□□ -0.62
LINC00339-213	ENST00000642137	LINC01387	J3KSC0	135 aa		11.16	□□□□□ -0.62
LINC00339-213	ENST00000642137	hCG_2039718	K7EN88	272 aa		11.16	□□□□□ -0.62
LINC00339-213	ENST00000642137	ATXN7	O15265	892 aa	Predicted RBP	11.16	□□□□□ -0.62
LINC00339-213	ENST00000642137	HNRNPR	O43390	633 aa	Known RBP	11.16	□□□□□ -0.62
LINC00339-213	ENST00000642137	FKBP6	O75344	327 aa		11.16	□□□□□ -0.62
LINC00339-213	ENST00000642137	THRB	P10828	461 aa		11.16	□□□□□ -0.62
LINC00339-213	ENST00000642137	FKBP2	P26885	142 aa	Known RBP	11.16	□□□□□ -0.62
LINC00339-213	ENST00000642137	YAP1	P46937	504 aa	Known RBP	11.16	□□□□□ -0.62
LINC00339-213	ENST00000642137	ERF	P50548	548 aa		11.16	□□□□□ -0.62
LINC00339-213	ENST00000642137	MAP2K6	P52564	334 aa		11.16	□□□□□ -0.62
LINC00339-213	ENST00000642137	TAS2R41	P59536	307 aa		11.16	□□□□□ -0.62
LINC00339-213	ENST00000642137	PMP22	Q01453	160 aa		11.16	□□□□□ -0.62
LINC00339-213	ENST00000642137	ST3GAL3	Q11203	375 aa		11.16	□□□□□ -0.62
LINC00339-213	ENST00000642137	PIN1	Q13526	163 aa	Predicted RBP	11.16	□□□□□ -0.62
LINC00339-213	ENST00000642137	TOMM20	Q15388	145 aa		11.16	□□□□□ -0.62
LINC00339-213	ENST00000642137	AAGAB	Q6PD74	315 aa		11.16	□□□□□ -0.62
LINC00339-213	ENST00000642137	PLEKHM3	Q6ZWE6	761 aa		11.16	□□□□□ -0.62
LINC00339-213	ENST00000642137	CADM2	Q8N3J6	435 aa		11.16	□□□□□ -0.62
LINC00339-213	ENST00000642137	GTPBP8	Q8N3Z3	284 aa	Predicted RBP	11.16	□□□□□ -0.62
LINC00339-213	ENST00000642137	OR14L1P	Q8NHC6	308 aa		11.16	□□□□□ -0.62
LINC00339-213	ENST00000642137	POC1B	Q8TC44	478 aa		11.16	□□□□□ -0.62
LINC00339-213	ENST00000642137	SLC38A4	Q969I6	547 aa		11.16	□□□□□ -0.62
LINC00339-213	ENST00000642137	PRRC1	Q96M27	445 aa		11.16	□□□□□ -0.62
LINC00339-213	ENST00000642137	PIGQ	Q9BRB3	760 aa		11.16	□□□□□ -0.62
LINC00339-213	ENST00000642137	SELENON	Q9NZV5	590 aa		11.16	□□□□□ -0.62
LINC00339-213	ENST00000642137	RIMS3	Q9UJD0	308 aa		11.16	□□□□□ -0.62
LINC00339-213	ENST00000642137	NTNG1	Q9Y2I2	539 aa		11.16	□□□□□ -0.62
LINC00339-213	ENST00000642137		J3KTA2	159 aa		11.15	□□□□□ -0.62
LINC00339-213	ENST00000642137	FFAR1	O14842	300 aa		11.15	□□□□□ -0.62
LINC00339-213	ENST00000642137	TFEC	O14948	347 aa	Predicted RBP	11.15	□□□□□ -0.62
LINC00339-213	ENST00000642137	HCN1	O60741	890 aa		11.15	□□□□□ -0.62
LINC00339-213	ENST00000642137	ENTPD5	O75356	428 aa		11.15	□□□□□ -0.62
LINC00339-213	ENST00000642137	KRT36	O76013	467 aa		11.15	□□□□□ -0.62
LINC00339-213	ENST00000642137	PRSS23	O95084	383 aa		11.15	□□□□□ -0.62
LINC00339-213	ENST00000642137	IGHG3	P01860	377 aa		11.15	□□□□□ -0.62
LINC00339-213	ENST00000642137	THY1	P04216	161 aa		11.15	□□□□□ -0.62
LINC00339-213	ENST00000642137	ZNF17	P17021	662 aa		11.15	□□□□□ -0.62
LINC00339-213	ENST00000642137	ZNF24	P17028	368 aa		11.15	□□□□□ -0.62
LINC00339-213	ENST00000642137	CHM	P24386	653 aa		11.15	□□□□□ -0.62
LINC00339-213	ENST00000642137	MST1	P26927	711 aa		11.15	□□□□□ -0.62
LINC00339-213	ENST00000642137	TACR3	P29371	465 aa		11.15	□□□□□ -0.62
LINC00339-213	ENST00000642137	POLR2H	P52434	150 aa	Known RBP	11.15	□□□□□ -0.62
LINC00339-213	ENST00000642137	HMGA2	P52926	109 aa		11.15	□□□□□ -0.62
LINC00339-213	ENST00000642137	CDH12	P55289	794 aa		11.15	□□□□□ -0.62
LINC00339-213	ENST00000642137	SMIM11A	P58511	58 aa		11.15	□□□□□ -0.62
LINC00339-213	ENST00000642137	ELF3	P78545	371 aa	Predicted RBP	11.15	□□□□□ -0.62
LINC00339-213	ENST00000642137	KRTCAP3	Q53RY4	240 aa		11.15	□□□□□ -0.62
LINC00339-213	ENST00000642137	ALG10B	Q5I7T1	473 aa		11.15	□□□□□ -0.62
LINC00339-213	ENST00000642137	WIPI1	Q5MNZ9	446 aa	Predicted RBP	11.15	□□□□□ -0.62
LINC00339-213	ENST00000642137	SWT1	Q5T5J6	900 aa	Known RBP	11.15	□□□□□ -0.62
LINC00339-213	ENST00000642137	FAM180A	Q6UWF9	173 aa		11.15	□□□□□ -0.62
LINC00339-213	ENST00000642137	LINC00114	Q6XXX2	140 aa		11.15	□□□□□ -0.62
LINC00339-213	ENST00000642137	GDF7	Q7Z4P5	450 aa		11.15	□□□□□ -0.62
LINC00339-213	ENST00000642137	ZNF605	Q86T29	641 aa		11.15	□□□□□ -0.62
LINC00339-213	ENST00000642137	YRDC	Q86U90	279 aa	Known RBP	11.15	□□□□□ -0.62
LINC00339-213	ENST00000642137	TSPYL5	Q86VY4	417 aa	Predicted RBP	11.15	□□□□□ -0.62
LINC00339-213	ENST00000642137	ADGRG3	Q86Y34	549 aa		11.15	□□□□□ -0.62
LINC00339-213	ENST00000642137	SIAH3	Q8IW03	269 aa		11.15	□□□□□ -0.62
LINC00339-213	ENST00000642137	PIK3C3	Q8NEB9	887 aa		11.15	□□□□□ -0.62
LINC00339-213	ENST00000642137	C3orf49	Q96BT1	292 aa		11.15	□□□□□ -0.62
LINC00339-213	ENST00000642137	SLC41A3	Q96GZ6	507 aa		11.15	□□□□□ -0.62
LINC00339-213	ENST00000642137	MPP4	Q96JB8	637 aa		11.15	□□□□□ -0.62
LINC00339-213	ENST00000642137	PIP5K1A	Q99755	562 aa		11.15	□□□□□ -0.62
LINC00339-213	ENST00000642137	FNDC11	Q9BVV2	318 aa		11.15	□□□□□ -0.62
LINC00339-213	ENST00000642137	DEFB127	Q9H1M4	99 aa		11.15	□□□□□ -0.62
LINC00339-213	ENST00000642137	S100A14	Q9HCY8	104 aa		11.15	□□□□□ -0.62
LINC00339-213	ENST00000642137	CTPS2	Q9NRF8	586 aa		11.15	□□□□□ -0.62
LINC00339-213	ENST00000642137	SERINC1	Q9NRX5	453 aa		11.15	□□□□□ -0.62
LINC00339-213	ENST00000642137	OSGIN1	Q9UJX0	560 aa		11.15	□□□□□ -0.62
LINC00339-213	ENST00000642137	RPH3A	Q9Y2J0	694 aa	Predicted RBP	11.15	□□□□□ -0.62
LINC00339-213	ENST00000642137	LOC400499	M0QZD8	3231 aa		11.14	□□□□□ -0.63
LINC00339-213	ENST00000642137		A0A087WUJ7	227 aa		11.14	□□□□□ -0.63
LINC00339-213	ENST00000642137		A0A1B0GVC2	190 aa		11.14	□□□□□ -0.63
LINC00339-213	ENST00000642137	CHP2	O43745	196 aa		11.14	□□□□□ -0.63
LINC00339-213	ENST00000642137	EFNA2	O43921	213 aa		11.14	□□□□□ -0.63
LINC00339-213	ENST00000642137	SUSD5	O60279	629 aa		11.14	□□□□□ -0.63
LINC00339-213	ENST00000642137	DIRAS1	O95057	198 aa		11.14	□□□□□ -0.63
LINC00339-213	ENST00000642137	LYPD3	O95274	346 aa		11.14	□□□□□ -0.63
LINC00339-213	ENST00000642137	CST1	P01037	141 aa		11.14	□□□□□ -0.63
LINC00339-213	ENST00000642137	PNMT	P11086	282 aa		11.14	□□□□□ -0.63

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