RNA–Protein interactions for RNA: ENST00000641575.1

SCN1A-219, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 BASIC

Gene SCN1A, Length 12,874 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-219ENST00000641575 FOXC1Q12948 553 aa2.63□□□□□ -1.99
SCN1A-219ENST00000641575 MSMO1Q15800 293 aa2.63□□□□□ -1.99
SCN1A-219ENST00000641575 NTRK2Q16620 822 aa2.63□□□□□ -1.99
SCN1A-219ENST00000641575 LRRC37A5PQ49AS3 106 aa2.63□□□□□ -1.99
SCN1A-219ENST00000641575 PLA1AQ53H76 456 aa2.63□□□□□ -1.99
SCN1A-219ENST00000641575 SPIN4Q56A73 249 aa2.63□□□□□ -1.99
SCN1A-219ENST00000641575 WBP2NLQ6ICG8 309 aa2.63□□□□□ -1.99
SCN1A-219ENST00000641575 TMEM217Q8N7C4 229 aa2.63□□□□□ -1.99
SCN1A-219ENST00000641575 SLC30A7Q8NEW0 376 aa2.63□□□□□ -1.99
SCN1A-219ENST00000641575 JOSD2Q8TAC2 188 aa2.63□□□□□ -1.99
SCN1A-219ENST00000641575 UBALD1Q8TB05 177 aa2.63□□□□□ -1.99
SCN1A-219ENST00000641575 C7orf43Q8WVR3 580 aa2.63□□□□□ -1.99
SCN1A-219ENST00000641575 HYLS1Q96M11 299 aa2.63□□□□□ -1.99
SCN1A-219ENST00000641575 EFCAB11Q9BUY7 163 aa2.63□□□□□ -1.99
SCN1A-219ENST00000641575 TMEM39BQ9GZU3 492 aa2.63□□□□□ -1.99
SCN1A-219ENST00000641575 IFT22Q9H7X7 185 aa2.63□□□□□ -1.99
SCN1A-219ENST00000641575 PLCXD1Q9NUJ7 323 aa2.63□□□□□ -1.99
SCN1A-219ENST00000641575 NLE1Q9NVX2 485 aaPredicted RBP2.63□□□□□ -1.99
SCN1A-219ENST00000641575 ZDHHC3Q9NYG2 299 aa2.63□□□□□ -1.99
SCN1A-219ENST00000641575 CA14Q9ULX7 337 aa2.63□□□□□ -1.99
SCN1A-219ENST00000641575 CRYBG1Q9Y4K1 1723 aa2.62□□□□□ -1.99
SCN1A-219ENST00000641575 DISP1Q96F81 1524 aa2.62□□□□□ -1.99
SCN1A-219ENST00000641575 SPDEFO95238 335 aa2.62□□□□□ -1.99
SCN1A-219ENST00000641575 CLDN9O95484 217 aa2.62□□□□□ -1.99
SCN1A-219ENST00000641575 ACAA1P09110 424 aaPredicted RBP2.62□□□□□ -1.99
SCN1A-219ENST00000641575 CLCNKBP51801 687 aa2.62□□□□□ -1.99
SCN1A-219ENST00000641575 TAS2R31P59538 309 aa2.62□□□□□ -1.99
SCN1A-219ENST00000641575 TAS2R20P59543 309 aa2.62□□□□□ -1.99
SCN1A-219ENST00000641575 ACTBP60709 375 aa2.62□□□□□ -1.99
SCN1A-219ENST00000641575 RPL38P63173 70 aaKnown RBP2.62□□□□□ -1.99
SCN1A-219ENST00000641575 KLF1Q13351 362 aaPredicted RBP2.62□□□□□ -1.99
SCN1A-219ENST00000641575 GPR68Q15743 365 aa2.62□□□□□ -1.99
SCN1A-219ENST00000641575 TSTQ16762 297 aaKnown RBP2.62□□□□□ -1.99
SCN1A-219ENST00000641575 HFEQ30201 348 aa2.62□□□□□ -1.99
SCN1A-219ENST00000641575 GPR153Q6NV75 609 aa2.62□□□□□ -1.99
SCN1A-219ENST00000641575 WDR74Q6RFH5 385 aaPredicted RBP2.62□□□□□ -1.99
SCN1A-219ENST00000641575 GSG1LQ6UXU4 331 aa2.62□□□□□ -1.99
SCN1A-219ENST00000641575 PLPPR4Q7Z2D5 763 aa2.62□□□□□ -1.99
SCN1A-219ENST00000641575 GTSCR1Q86UQ5 136 aa2.62□□□□□ -1.99
SCN1A-219ENST00000641575 CD163Q86VB7 1156 aa2.62□□□□□ -1.99
SCN1A-219ENST00000641575 VRK3Q8IV63 474 aa2.62□□□□□ -1.99
SCN1A-219ENST00000641575 HUS1BQ8NHY5 278 aa2.62□□□□□ -1.99
SCN1A-219ENST00000641575 DYNLRB2Q8TF09 96 aa2.62□□□□□ -1.99
SCN1A-219ENST00000641575 TANKQ92844 425 aa2.62□□□□□ -1.99
SCN1A-219ENST00000641575 C14orf79Q96F83 325 aa2.62□□□□□ -1.99
SCN1A-219ENST00000641575 PKMYT1Q99640 499 aa2.62□□□□□ -1.99
SCN1A-219ENST00000641575 JAM3Q9BX67 310 aa2.62□□□□□ -1.99
SCN1A-219ENST00000641575 SHARPINQ9H0F6 387 aa2.62□□□□□ -1.99
SCN1A-219ENST00000641575 OR2S2Q9NQN1 319 aa2.62□□□□□ -1.99
SCN1A-219ENST00000641575 MAN2C1Q9NTJ4 1040 aa2.62□□□□□ -1.99
SCN1A-219ENST00000641575 DCAF16Q9NXF7 216 aa2.62□□□□□ -1.99
SCN1A-219ENST00000641575 GDE1Q9NZC3 331 aa2.62□□□□□ -1.99
SCN1A-219ENST00000641575 LRIT1Q9P2V4 623 aa2.62□□□□□ -1.99
SCN1A-219ENST00000641575 A0A1B0GTW7 788 aa2.62□□□□□ -1.99
SCN1A-219ENST00000641575 SEC14L6B5MCN3 397 aa2.62□□□□□ -1.99
SCN1A-219ENST00000641575 S100A8P05109 93 aa2.62□□□□□ -1.99
SCN1A-219ENST00000641575 HMGN1P05114 100 aa2.62□□□□□ -1.99
SCN1A-219ENST00000641575 JUNP05412 331 aaKnown RBP2.62□□□□□ -1.99
SCN1A-219ENST00000641575 GCAP28676 217 aa2.62□□□□□ -1.99
SCN1A-219ENST00000641575 CHRNA4P43681 627 aa2.62□□□□□ -1.99
SCN1A-219ENST00000641575 HSF1Q00613 529 aa2.62□□□□□ -1.99
SCN1A-219ENST00000641575 CNTN2Q02246 1040 aa2.62□□□□□ -1.99
SCN1A-219ENST00000641575 BST1Q10588 318 aa2.62□□□□□ -1.99
SCN1A-219ENST00000641575 TMEM69Q5SWH9 247 aa2.62□□□□□ -1.99
SCN1A-219ENST00000641575 G2E3Q7L622 706 aa2.62□□□□□ -1.99
SCN1A-219ENST00000641575 NRARPQ7Z6K4 114 aa2.62□□□□□ -1.99
SCN1A-219ENST00000641575 TMEM173Q86WV6 379 aaPredicted RBP2.62□□□□□ -1.99
SCN1A-219ENST00000641575 ZNF584Q8IVC4 421 aa2.62□□□□□ -1.99
SCN1A-219ENST00000641575 CPSF7Q8N684 471 aaKnown RBP2.62□□□□□ -1.99
SCN1A-219ENST00000641575 OR6F1Q8NGZ6 308 aa2.62□□□□□ -1.99
SCN1A-219ENST00000641575 OR2T4Q8NH00 348 aa2.62□□□□□ -1.99
SCN1A-219ENST00000641575 SHKBP1Q8TBC3 707 aa2.62□□□□□ -1.99
SCN1A-219ENST00000641575 TMEM163Q8TC26 289 aa2.62□□□□□ -1.99
SCN1A-219ENST00000641575 TFGQ92734 400 aaPredicted RBP2.62□□□□□ -1.99
SCN1A-219ENST00000641575 THAP2Q9H0W7 228 aa2.62□□□□□ -1.99
SCN1A-219ENST00000641575 POLR2J3Q9H1A7 115 aaKnown RBP2.62□□□□□ -1.99
SCN1A-219ENST00000641575 GLTPQ9NZD2 209 aa2.62□□□□□ -1.99
SCN1A-219ENST00000641575 POLDIP2Q9Y2S7 368 aa2.62□□□□□ -1.99
SCN1A-219ENST00000641575 TESMINQ9Y4I5 508 aa2.62□□□□□ -1.99
SCN1A-219ENST00000641575 A0A1W2PP18 115 aa2.62□□□□□ -1.99
SCN1A-219ENST00000641575 K7ERQ8 282 aa2.62□□□□□ -1.99
SCN1A-219ENST00000641575 AMY2BP19961 511 aa2.62□□□□□ -1.99
SCN1A-219ENST00000641575 USF1P22415 310 aaPredicted RBP2.62□□□□□ -1.99
SCN1A-219ENST00000641575 SHC1P29353 583 aa2.62□□□□□ -1.99
SCN1A-219ENST00000641575 AQP1P29972 269 aa2.62□□□□□ -1.99
SCN1A-219ENST00000641575 FCER1GP30273 86 aa2.62□□□□□ -1.99
SCN1A-219ENST00000641575 IL24Q13007 206 aa2.62□□□□□ -1.99
SCN1A-219ENST00000641575 RAB33AQ14088 237 aa2.62□□□□□ -1.99
SCN1A-219ENST00000641575 ELAVL3Q14576 367 aaKnown RBP2.62□□□□□ -1.99
SCN1A-219ENST00000641575 TOMM34Q15785 309 aaPredicted RBP2.62□□□□□ -1.99
SCN1A-219ENST00000641575 COQ5Q5HYK3 327 aa2.62□□□□□ -1.99
SCN1A-219ENST00000641575 YOD1Q5VVQ6 348 aaPredicted RBP2.62□□□□□ -1.99
SCN1A-219ENST00000641575 GFRALQ6UXV0 394 aa2.62□□□□□ -1.99
SCN1A-219ENST00000641575 SPATA19Q7Z5L4 167 aa2.62□□□□□ -1.99
SCN1A-219ENST00000641575 RELL2Q8NC24 303 aaPredicted RBP2.62□□□□□ -1.99
SCN1A-219ENST00000641575 SIMC1Q8NDZ2 872 aa2.62□□□□□ -1.99
SCN1A-219ENST00000641575 PXT1Q8NFP0 134 aa2.62□□□□□ -1.99
SCN1A-219ENST00000641575 ZNF317Q96PQ6 595 aaPredicted RBP2.62□□□□□ -1.99
SCN1A-219ENST00000641575 SNX18Q96RF0 628 aa2.62□□□□□ -1.99
SCN1A-219ENST00000641575 CTPS2Q9NRF8 586 aa2.62□□□□□ -1.99
Retrieved 100 of 20,778 RNA–protein pairs in 49.8 ms