RNA–Protein interactions for RNA: ENST00000640313.1

VPS35-212, Transcript of VPS35, retromer complex component, humanhuman

TSL 5 BASIC

Gene VPS35, Length 141 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-212ENST00000640313 NOP14P78316 857 aaKnown RBP0.18□□□□□ -2.38
VPS35-212ENST00000640313 CSNK1G2P78368 415 aa0.18□□□□□ -2.38
VPS35-212ENST00000640313 EWSR1Q01844 656 aaKnown RBP eCLIP0.18□□□□□ -2.38
VPS35-212ENST00000640313 MAP2K1Q02750 393 aaPredicted RBP0.18□□□□□ -2.38
VPS35-212ENST00000640313 GFPT1Q06210 699 aaPredicted RBP0.18□□□□□ -2.38
VPS35-212ENST00000640313 ENPEPQ07075 957 aa0.18□□□□□ -2.38
VPS35-212ENST00000640313 NME3Q13232 169 aa0.18□□□□□ -2.38
VPS35-212ENST00000640313 SLAQ13239 276 aa0.18□□□□□ -2.38
VPS35-212ENST00000640313 SNX1Q13596 522 aa0.18□□□□□ -2.38
VPS35-212ENST00000640313 CUL1Q13616 776 aa0.18□□□□□ -2.38
VPS35-212ENST00000640313 BTG3Q14201 252 aaPredicted RBP0.18□□□□□ -2.38
VPS35-212ENST00000640313 ATXN7L3Q14CW9 347 aaPredicted RBP0.18□□□□□ -2.38
VPS35-212ENST00000640313 NSDHLQ15738 373 aa0.18□□□□□ -2.38
VPS35-212ENST00000640313 NDUFA9Q16795 377 aa0.18□□□□□ -2.38
VPS35-212ENST00000640313 RSPO1Q2MKA7 263 aaPredicted RBP0.18□□□□□ -2.38
VPS35-212ENST00000640313 C2orf76Q3KRA6 126 aa0.18□□□□□ -2.38
VPS35-212ENST00000640313 KRTAP13-4Q3LI77 160 aa0.18□□□□□ -2.38
VPS35-212ENST00000640313 ABCA11PQ4W5N1 156 aa0.18□□□□□ -2.38
VPS35-212ENST00000640313 C5orf47Q569G3 176 aa0.18□□□□□ -2.38
VPS35-212ENST00000640313 BEND6Q5SZJ8 279 aaPredicted RBP0.18□□□□□ -2.38
VPS35-212ENST00000640313 OR2G6Q5TZ20 316 aa0.18□□□□□ -2.38
VPS35-212ENST00000640313 ATF7IP2Q5U623 682 aa0.18□□□□□ -2.38
VPS35-212ENST00000640313 C1orf146Q5VVC0 180 aa0.18□□□□□ -2.38
VPS35-212ENST00000640313 LIPNQ5VXI9 398 aa0.18□□□□□ -2.38
VPS35-212ENST00000640313 OR8G2PQ6IF36 304 aa0.18□□□□□ -2.38
VPS35-212ENST00000640313 OR52W1Q6IF63 320 aa0.18□□□□□ -2.38
VPS35-212ENST00000640313 C11orf71Q6IPW1 123 aa0.18□□□□□ -2.38
VPS35-212ENST00000640313 RAB12Q6IQ22 244 aa0.18□□□□□ -2.38
VPS35-212ENST00000640313 ACSM5Q6NUN0 579 aa0.18□□□□□ -2.38
VPS35-212ENST00000640313 NIPAL3Q6P499 406 aa0.18□□□□□ -2.38
VPS35-212ENST00000640313 C6orf89Q6UWU4 347 aa0.18□□□□□ -2.38
VPS35-212ENST00000640313 ZNF621Q6ZSS3 439 aa0.18□□□□□ -2.38
VPS35-212ENST00000640313 TMEM26Q6ZUK4 368 aa0.18□□□□□ -2.38
VPS35-212ENST00000640313 TOM1L2Q6ZVM7 507 aa0.18□□□□□ -2.38
VPS35-212ENST00000640313 ABHD12BQ7Z5M8 362 aaPredicted RBP0.18□□□□□ -2.38
VPS35-212ENST00000640313 RABEPKQ7Z6M1 372 aa0.18□□□□□ -2.38
VPS35-212ENST00000640313 ANKRD23Q86SG2 305 aa0.18□□□□□ -2.38
VPS35-212ENST00000640313 LINC01551Q86U37 167 aa0.18□□□□□ -2.38
VPS35-212ENST00000640313 VPS36Q86VN1 386 aa0.18□□□□□ -2.38
VPS35-212ENST00000640313 VRK2Q86Y07 508 aa0.18□□□□□ -2.38
VPS35-212ENST00000640313 GRAMD2AQ8IUY3 354 aa0.18□□□□□ -2.38
VPS35-212ENST00000640313 MFSD6LQ8IWD5 586 aa0.18□□□□□ -2.38
VPS35-212ENST00000640313 EFCAB13Q8IY85 973 aa0.18□□□□□ -2.38
VPS35-212ENST00000640313 ELMOD2Q8IZ81 293 aa0.18□□□□□ -2.38
VPS35-212ENST00000640313 RDH10Q8IZV5 341 aa0.18□□□□□ -2.38
VPS35-212ENST00000640313 BATF2Q8N1L9 274 aa0.18□□□□□ -2.38
VPS35-212ENST00000640313 OR2L13Q8N349 312 aa0.18□□□□□ -2.38
VPS35-212ENST00000640313 MTURNQ8N3F0 131 aa0.18□□□□□ -2.38
VPS35-212ENST00000640313 PNKDQ8N490 385 aa0.18□□□□□ -2.38
VPS35-212ENST00000640313 C10orf53Q8N6V4 93 aa0.18□□□□□ -2.38
VPS35-212ENST00000640313 BCORP1Q8N888 145 aa0.18□□□□□ -2.38
VPS35-212ENST00000640313 ZNF615Q8N8J6 731 aa0.18□□□□□ -2.38
VPS35-212ENST00000640313 Q8N9W7 124 aa0.18□□□□□ -2.38
VPS35-212ENST00000640313 ZSCAN4Q8NAM6 433 aaPredicted RBP0.18□□□□□ -2.38
VPS35-212ENST00000640313 STKLD1Q8NE28 680 aa0.18□□□□□ -2.38
VPS35-212ENST00000640313 ANKRD20A12PQ8NF67 263 aa0.18□□□□□ -2.38
VPS35-212ENST00000640313 NEK11Q8NG66 645 aa0.18□□□□□ -2.38
VPS35-212ENST00000640313 OR51S1Q8NGJ8 323 aa0.18□□□□□ -2.38
VPS35-212ENST00000640313 OR51G1Q8NGK1 321 aa0.18□□□□□ -2.38
VPS35-212ENST00000640313 CNIH3Q8TBE1 160 aa0.18□□□□□ -2.38
VPS35-212ENST00000640313 SLC22A8Q8TCC7 542 aa0.18□□□□□ -2.38
VPS35-212ENST00000640313 BRSK1Q8TDC3 778 aa0.18□□□□□ -2.38
VPS35-212ENST00000640313 DNAJA4Q8WW22 397 aaPredicted RBP0.18□□□□□ -2.38
VPS35-212ENST00000640313 FAM151AQ8WW52 585 aa0.18□□□□□ -2.38
VPS35-212ENST00000640313 SLC13A3Q8WWT9 602 aa0.18□□□□□ -2.38
VPS35-212ENST00000640313 STARD8Q92502 1023 aa0.18□□□□□ -2.38
VPS35-212ENST00000640313 FAM3CQ92520 227 aa0.18□□□□□ -2.38
VPS35-212ENST00000640313 ATP6V0A1Q93050 837 aa0.18□□□□□ -2.38
VPS35-212ENST00000640313 SNX21Q969T3 373 aa0.18□□□□□ -2.38
VPS35-212ENST00000640313 NCLNQ969V3 563 aa0.18□□□□□ -2.38
VPS35-212ENST00000640313 TADA1Q96BN2 335 aa0.18□□□□□ -2.38
VPS35-212ENST00000640313 RBMXL1Q96E39 390 aaKnown RBP0.18□□□□□ -2.38
VPS35-212ENST00000640313 VMP1Q96GC9 406 aa0.18□□□□□ -2.38
VPS35-212ENST00000640313 PGLYRP4Q96LB8 373 aa0.18□□□□□ -2.38
VPS35-212ENST00000640313 VSTM2LQ96N03 204 aa0.18□□□□□ -2.38
VPS35-212ENST00000640313 ZNF578Q96N58 590 aaPredicted RBP0.18□□□□□ -2.38
VPS35-212ENST00000640313 TSNARE1Q96NA8 513 aa0.18□□□□□ -2.38
VPS35-212ENST00000640313 OR5B2Q96R09 309 aa0.18□□□□□ -2.38
VPS35-212ENST00000640313 KCNA7Q96RP8 456 aa0.18□□□□□ -2.38
VPS35-212ENST00000640313 CCNL2Q96S94 520 aaPredicted RBP0.18□□□□□ -2.38
VPS35-212ENST00000640313 NAP1L3Q99457 506 aaPredicted RBP0.18□□□□□ -2.38
VPS35-212ENST00000640313 NPAS2Q99743 824 aa0.18□□□□□ -2.38
VPS35-212ENST00000640313 TSG101Q99816 390 aa0.18□□□□□ -2.38
VPS35-212ENST00000640313 SPIN2AQ99865 258 aa0.18□□□□□ -2.38
VPS35-212ENST00000640313 SPIN2BQ9BPZ2 258 aa0.18□□□□□ -2.38
VPS35-212ENST00000640313 NRIP2Q9BQI9 281 aa0.18□□□□□ -2.38
VPS35-212ENST00000640313 ZNF670Q9BS34 389 aa0.18□□□□□ -2.38
VPS35-212ENST00000640313 ZNF2Q9BSG1 426 aaPredicted RBP0.18□□□□□ -2.38
VPS35-212ENST00000640313 ZNF416Q9BWM5 594 aa0.18□□□□□ -2.38
VPS35-212ENST00000640313 ERVK-6Q9BXR3 956 aa0.18□□□□□ -2.38
VPS35-212ENST00000640313 MRPL13Q9BYD1 178 aaKnown RBP0.18□□□□□ -2.38
VPS35-212ENST00000640313 PLA2G2FQ9BZM2 168 aa0.18□□□□□ -2.38
VPS35-212ENST00000640313 NMNAT2Q9BZQ4 307 aa0.18□□□□□ -2.38
VPS35-212ENST00000640313 XPO4Q9C0E2 1151 aaKnown RBP0.18□□□□□ -2.38
VPS35-212ENST00000640313 OR11A1Q9GZK7 315 aa0.18□□□□□ -2.38
VPS35-212ENST00000640313 DDX47Q9H0S4 455 aaKnown RBP0.18□□□□□ -2.38
VPS35-212ENST00000640313 DNTTIP1Q9H147 329 aa0.18□□□□□ -2.38
VPS35-212ENST00000640313 ABCG4Q9H172 646 aa0.18□□□□□ -2.38
VPS35-212ENST00000640313 ALDH8A1Q9H2A2 487 aaPredicted RBP0.18□□□□□ -2.38
VPS35-212ENST00000640313 RHBGQ9H310 441 aa0.18□□□□□ -2.38
Retrieved 100 of 20,778 RNA–protein pairs in 39.7 ms