RNA–Protein interactions for RNA: ENST00000640036.1

SCN1A-218, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN1A, Length 8,131 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-218ENST00000640036 UGT3A2Q3SY77 523 aa4.68□□□□□ -1.66
SCN1A-218ENST00000640036 MTX3Q5HYI7 312 aa4.68□□□□□ -1.66
SCN1A-218ENST00000640036 SPATC1Q76KD6 591 aa4.68□□□□□ -1.66
SCN1A-218ENST00000640036 ZZZ3Q8IYH5 903 aa4.68□□□□□ -1.66
SCN1A-218ENST00000640036 KLHL36Q8N4N3 616 aa4.68□□□□□ -1.66
SCN1A-218ENST00000640036 B3GNT7Q8NFL0 401 aa4.68□□□□□ -1.66
SCN1A-218ENST00000640036 IL17RDQ8NFM7 739 aa4.68□□□□□ -1.66
SCN1A-218ENST00000640036 OR52P1PQ8NH57 321 aa4.68□□□□□ -1.66
SCN1A-218ENST00000640036 DOK4Q8TEW6 326 aa4.68□□□□□ -1.66
SCN1A-218ENST00000640036 C14orf119Q9NWQ9 140 aa4.68□□□□□ -1.66
SCN1A-218ENST00000640036 IL17CQ9P0M4 197 aa4.68□□□□□ -1.66
SCN1A-218ENST00000640036 FOXD3Q9UJU5 478 aaPredicted RBP4.68□□□□□ -1.66
SCN1A-218ENST00000640036 CBLCQ9ULV8 474 aa4.68□□□□□ -1.66
SCN1A-218ENST00000640036 PDE10AQ9Y233 779 aa4.68□□□□□ -1.66
SCN1A-218ENST00000640036 WASH4PA8MWX3 477 aa4.68□□□□□ -1.66
SCN1A-218ENST00000640036 B4E171 279 aa4.68□□□□□ -1.66
SCN1A-218ENST00000640036 IFNA5P01569 189 aa4.68□□□□□ -1.66
SCN1A-218ENST00000640036 ETFAP13804 333 aa4.68□□□□□ -1.66
SCN1A-218ENST00000640036 GABRR1P24046 479 aa4.68□□□□□ -1.66
SCN1A-218ENST00000640036 CDK2P24941 298 aa4.68□□□□□ -1.66
SCN1A-218ENST00000640036 TSPAN7P41732 249 aa4.68□□□□□ -1.66
SCN1A-218ENST00000640036 SOX8P57073 446 aa4.68□□□□□ -1.66
SCN1A-218ENST00000640036 RRAS2P62070 204 aaPredicted RBP4.68□□□□□ -1.66
SCN1A-218ENST00000640036 SLC34A1Q06495 639 aa4.68□□□□□ -1.66
SCN1A-218ENST00000640036 TRAM1Q15629 374 aa4.68□□□□□ -1.66
SCN1A-218ENST00000640036 ZNF829Q3KNS6 432 aaPredicted RBP4.68□□□□□ -1.66
SCN1A-218ENST00000640036 PLEKHG7Q6ZR37 379 aa4.68□□□□□ -1.66
SCN1A-218ENST00000640036 OR52R1Q8NGF1 315 aa4.68□□□□□ -1.66
SCN1A-218ENST00000640036 OR2T4Q8NH00 348 aa4.68□□□□□ -1.66
SCN1A-218ENST00000640036 INTS12Q96CB8 462 aaKnown RBP4.68□□□□□ -1.66
SCN1A-218ENST00000640036 SLC12A9Q9BXP2 914 aa4.68□□□□□ -1.66
SCN1A-218ENST00000640036 SAR1AQ9NR31 198 aa4.68□□□□□ -1.66
SCN1A-218ENST00000640036 RAB21Q9UL25 225 aa4.68□□□□□ -1.66
SCN1A-218ENST00000640036 PLXNA1Q9UIW2 1896 aa4.68□□□□□ -1.66
SCN1A-218ENST00000640036 TAF1LQ8IZX4 1826 aa4.68□□□□□ -1.66
SCN1A-218ENST00000640036 A0A096LPI6 279 aa4.68□□□□□ -1.66
SCN1A-218ENST00000640036 FAM240BA0A1B0GVZ2 78 aa4.68□□□□□ -1.66
SCN1A-218ENST00000640036 A8MXE2 369 aa4.68□□□□□ -1.66
SCN1A-218ENST00000640036 SMAD7O15105 426 aaKnown RBP4.68□□□□□ -1.66
SCN1A-218ENST00000640036 C6orf47O95873 294 aa4.68□□□□□ -1.66
SCN1A-218ENST00000640036 IL3P08700 152 aa4.68□□□□□ -1.66
SCN1A-218ENST00000640036 SLC19A1P41440 591 aa4.68□□□□□ -1.66
SCN1A-218ENST00000640036 POU3F4P49335 361 aa4.68□□□□□ -1.66
SCN1A-218ENST00000640036 MEOX1P50221 254 aa4.68□□□□□ -1.66
SCN1A-218ENST00000640036 RBM39Q14498 530 aaKnown RBP4.68□□□□□ -1.66
SCN1A-218ENST00000640036 CCSAPQ6IQ19 270 aaPredicted RBP4.68□□□□□ -1.66
SCN1A-218ENST00000640036 UNQ9370/PRO34162Q6UXP9 181 aa4.68□□□□□ -1.66
SCN1A-218ENST00000640036 SLC34A3Q8N130 599 aa4.68□□□□□ -1.66
SCN1A-218ENST00000640036 MFSD9Q8NBP5 474 aa4.68□□□□□ -1.66
SCN1A-218ENST00000640036 MORN4Q8NDC4 146 aa4.68□□□□□ -1.66
SCN1A-218ENST00000640036 GPR26Q8NDV2 337 aa4.68□□□□□ -1.66
SCN1A-218ENST00000640036 OR52B6Q8NGF0 335 aa4.68□□□□□ -1.66
SCN1A-218ENST00000640036 LINC01599Q8WXQ3 324 aa4.68□□□□□ -1.66
SCN1A-218ENST00000640036 C8orf44Q96CB5 159 aa4.68□□□□□ -1.66
SCN1A-218ENST00000640036 MALSU1Q96EH3 234 aa4.68□□□□□ -1.66
SCN1A-218ENST00000640036 RANBP9Q96S59 729 aa4.68□□□□□ -1.66
SCN1A-218ENST00000640036 MRI1Q9BV20 369 aa4.68□□□□□ -1.66
SCN1A-218ENST00000640036 RNF11Q9Y3C5 154 aa4.68□□□□□ -1.66
SCN1A-218ENST00000640036 ACOX3O15254 700 aa4.68□□□□□ -1.66
SCN1A-218ENST00000640036 RPP14O95059 124 aaKnown RBP4.68□□□□□ -1.66
SCN1A-218ENST00000640036 OPN1LWP04000 364 aa4.68□□□□□ -1.66
SCN1A-218ENST00000640036 CCR2P41597 374 aa4.68□□□□□ -1.66
SCN1A-218ENST00000640036 HTR5AP47898 357 aa4.68□□□□□ -1.66
SCN1A-218ENST00000640036 MARCKSL1P49006 195 aa4.68□□□□□ -1.66
SCN1A-218ENST00000640036 NR1H2P55055 460 aa4.68□□□□□ -1.66
SCN1A-218ENST00000640036 MLF1P58340 268 aa4.68□□□□□ -1.66
SCN1A-218ENST00000640036 ASTE1Q2TB18 679 aaPredicted RBP4.68□□□□□ -1.66
SCN1A-218ENST00000640036 TPRG1LQ5T0D9 272 aa4.68□□□□□ -1.66
SCN1A-218ENST00000640036 SLC35F1Q5T1Q4 408 aa4.68□□□□□ -1.66
SCN1A-218ENST00000640036 METRNLQ641Q3 311 aa4.68□□□□□ -1.66
SCN1A-218ENST00000640036 ESPNLQ6ZVH7 1005 aa4.68□□□□□ -1.66
SCN1A-218ENST00000640036 FBXW8Q8N3Y1 598 aa4.68□□□□□ -1.66
SCN1A-218ENST00000640036 OR4N2Q8NGD1 307 aa4.68□□□□□ -1.66
SCN1A-218ENST00000640036 OR4K1Q8NGD4 311 aa4.68□□□□□ -1.66
SCN1A-218ENST00000640036 OR52J3Q8NH60 311 aa4.68□□□□□ -1.66
SCN1A-218ENST00000640036 THAP6Q8TBB0 222 aa4.68□□□□□ -1.66
SCN1A-218ENST00000640036 CORO2AQ92828 525 aa4.68□□□□□ -1.66
SCN1A-218ENST00000640036 DLGAP2Q9P1A6 1054 aa4.68□□□□□ -1.66
SCN1A-218ENST00000640036 GNG13Q9P2W3 67 aa4.68□□□□□ -1.66
SCN1A-218ENST00000640036 PILRBQ9UKJ0 227 aa4.68□□□□□ -1.66
SCN1A-218ENST00000640036 KRBA1A5PL33 1030 aa4.68□□□□□ -1.66
SCN1A-218ENST00000640036 OR2AT4A6NND4 320 aa4.68□□□□□ -1.66
SCN1A-218ENST00000640036 C9JVG2 144 aa4.68□□□□□ -1.66
SCN1A-218ENST00000640036 H7C2Y5 167 aa4.68□□□□□ -1.66
SCN1A-218ENST00000640036 SLC1A7O00341 560 aa4.68□□□□□ -1.66
SCN1A-218ENST00000640036 FZD7O75084 574 aa4.68□□□□□ -1.66
SCN1A-218ENST00000640036 ZNF821O75541 412 aaPredicted RBP4.68□□□□□ -1.66
SCN1A-218ENST00000640036 CD3GP09693 182 aa4.68□□□□□ -1.66
SCN1A-218ENST00000640036 IMPDH1P20839 514 aa4.68□□□□□ -1.66
SCN1A-218ENST00000640036 CEBPGP53567 150 aa4.68□□□□□ -1.66
SCN1A-218ENST00000640036 PHC1P78364 1004 aa4.68□□□□□ -1.66
SCN1A-218ENST00000640036 MRPL58Q14197 206 aaKnown RBP4.68□□□□□ -1.66
SCN1A-218ENST00000640036 GNMTQ14749 295 aa4.68□□□□□ -1.66
SCN1A-218ENST00000640036 KCNIP4Q6PIL6 250 aa4.68□□□□□ -1.66
SCN1A-218ENST00000640036 ZC3HAV1Q7Z2W4 902 aaKnown RBP4.68□□□□□ -1.66
SCN1A-218ENST00000640036 FAM181AQ8N9Y4 354 aa4.68□□□□□ -1.66
SCN1A-218ENST00000640036 PIGTQ969N2 578 aa4.68□□□□□ -1.66
SCN1A-218ENST00000640036 ZNF775Q96BV0 537 aaPredicted RBP4.68□□□□□ -1.66
SCN1A-218ENST00000640036 TMEM41AQ96HV5 264 aa4.68□□□□□ -1.66
SCN1A-218ENST00000640036 URM1Q9BTM9 101 aaKnown RBP4.68□□□□□ -1.66
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms