RNA–Protein interactions for RNA: ENST00000637050.1

CLN3-254, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,684 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-254ENST00000637050 FPR3P25089 353 aa16.8■□□□□ 0.28
CLN3-254ENST00000637050 ITPKBP27987 946 aa16.8■□□□□ 0.28
CLN3-254ENST00000637050 CASP3P42574 277 aa16.8■□□□□ 0.28
CLN3-254ENST00000637050 SLC1A3P43003 542 aa16.8■□□□□ 0.28
CLN3-254ENST00000637050 MYBPC1Q00872 1141 aa16.8■□□□□ 0.28
CLN3-254ENST00000637050 CBFBQ13951 182 aa16.8■□□□□ 0.28
CLN3-254ENST00000637050 THAP5Q7Z6K1 395 aa16.8■□□□□ 0.28
CLN3-254ENST00000637050 ATG4DQ86TL0 474 aaPredicted RBP16.8■□□□□ 0.28
CLN3-254ENST00000637050 TMEM156Q8N614 296 aa16.8■□□□□ 0.28
CLN3-254ENST00000637050 GPR119Q8TDV5 335 aa16.8■□□□□ 0.28
CLN3-254ENST00000637050 THOC3Q96J01 351 aaKnown RBP16.8■□□□□ 0.28
CLN3-254ENST00000637050 ADAM19Q9H013 955 aa16.8■□□□□ 0.28
CLN3-254ENST00000637050 SH2D2AQ9NP31 389 aa16.8■□□□□ 0.28
CLN3-254ENST00000637050 CNIH4Q9P003 139 aa16.8■□□□□ 0.28
CLN3-254ENST00000637050 MED31Q9Y3C7 131 aa16.8■□□□□ 0.28
CLN3-254ENST00000637050 CNOT1A5YKK6 2376 aaKnown RBP16.8■□□□□ 0.28
CLN3-254ENST00000637050 IGLV3-32A0A0A0MS00 114 aa16.79■□□□□ 0.28
CLN3-254ENST00000637050 PNMTP11086 282 aa16.79■□□□□ 0.28
CLN3-254ENST00000637050 SUMO3P55854 103 aaPredicted RBP16.79■□□□□ 0.28
CLN3-254ENST00000637050 CTBP2P56545 445 aa16.79■□□□□ 0.28
CLN3-254ENST00000637050 ISL1P61371 349 aa16.79■□□□□ 0.28
CLN3-254ENST00000637050 SNTA1Q13424 505 aa16.79■□□□□ 0.28
CLN3-254ENST00000637050 PTGES3Q15185 160 aaKnown RBP16.79■□□□□ 0.28
CLN3-254ENST00000637050 COL28A1Q2UY09 1125 aa16.79■□□□□ 0.28
CLN3-254ENST00000637050 ACER2Q5QJU3 275 aa16.79■□□□□ 0.28
CLN3-254ENST00000637050 B3GNTL1Q67FW5 361 aaPredicted RBP16.79■□□□□ 0.28
CLN3-254ENST00000637050 Q6ZPB1 254 aaPredicted RBP16.79■□□□□ 0.28
CLN3-254ENST00000637050 MEX3DQ86XN8 651 aaKnown RBP16.79■□□□□ 0.28
CLN3-254ENST00000637050 SIRT6Q8N6T7 355 aa16.79■□□□□ 0.28
CLN3-254ENST00000637050 SETD9Q8NE22 299 aa16.79■□□□□ 0.28
CLN3-254ENST00000637050 PFN4Q8NHR9 129 aa16.79■□□□□ 0.28
CLN3-254ENST00000637050 ZNF563Q8TA94 476 aa16.79■□□□□ 0.28
CLN3-254ENST00000637050 NTNG2Q96CW9 530 aa16.79■□□□□ 0.28
CLN3-254ENST00000637050 FER1L6-AS2Q96M78 137 aa16.79■□□□□ 0.28
CLN3-254ENST00000637050 C12orf10Q9HB07 376 aa16.79■□□□□ 0.28
CLN3-254ENST00000637050 CPNE5Q9HCH3 593 aa16.79■□□□□ 0.28
CLN3-254ENST00000637050 MEPEQ9NQ76 525 aaPredicted RBP16.79■□□□□ 0.28
CLN3-254ENST00000637050 SDHAF3Q9NRP4 125 aa16.79■□□□□ 0.28
CLN3-254ENST00000637050 WIF1Q9Y5W5 379 aa16.79■□□□□ 0.28
CLN3-254ENST00000637050 HSPE1-MOB4S4R3N1 261 aa16.79■□□□□ 0.28
CLN3-254ENST00000637050 MAGEA13PA6NCF6 341 aa16.78■□□□□ 0.28
CLN3-254ENST00000637050 C2orf72A6NCS6 295 aa16.78■□□□□ 0.28
CLN3-254ENST00000637050 TRABD2BA6NFA1 517 aa16.78■□□□□ 0.28
CLN3-254ENST00000637050 ZAR1LA6NP61 321 aa16.78■□□□□ 0.28
CLN3-254ENST00000637050 B4DXG7 233 aa16.78■□□□□ 0.28
CLN3-254ENST00000637050 PTNP21246 168 aa16.78■□□□□ 0.28
CLN3-254ENST00000637050 GGT2P36268 569 aa16.78■□□□□ 0.28
CLN3-254ENST00000637050 GPR4P46093 362 aa16.78■□□□□ 0.28
CLN3-254ENST00000637050 ST13P50502 369 aaKnown RBP16.78■□□□□ 0.28
CLN3-254ENST00000637050 AIMP2Q13155 320 aaKnown RBP16.78■□□□□ 0.28
CLN3-254ENST00000637050 TOMM34Q15785 309 aaPredicted RBP16.78■□□□□ 0.28
CLN3-254ENST00000637050 MEP1AQ16819 746 aa16.78■□□□□ 0.28
CLN3-254ENST00000637050 TTC33Q6PID6 262 aaPredicted RBP16.78■□□□□ 0.28
CLN3-254ENST00000637050 RASSF6Q6ZTQ3 369 aa16.78■□□□□ 0.28
CLN3-254ENST00000637050 VASH2Q86V25 355 aa16.78■□□□□ 0.28
CLN3-254ENST00000637050 CCDC71Q8IV32 467 aaPredicted RBP16.78■□□□□ 0.28
CLN3-254ENST00000637050 PAQR8Q8TEZ7 354 aa16.78■□□□□ 0.28
CLN3-254ENST00000637050 NXPE2Q96DL1 559 aa16.78■□□□□ 0.28
CLN3-254ENST00000637050 FRMD6Q96NE9 622 aa16.78■□□□□ 0.28
CLN3-254ENST00000637050 APOL4Q9BPW4 351 aa16.78■□□□□ 0.28
CLN3-254ENST00000637050 HHATLQ9HCP6 504 aa16.78■□□□□ 0.28
CLN3-254ENST00000637050 ATP13A2Q9NQ11 1180 aa16.78■□□□□ 0.28
CLN3-254ENST00000637050 C20orf141Q9NUB4 165 aa16.78■□□□□ 0.28
CLN3-254ENST00000637050 TMEM5Q9Y2B1 443 aa16.78■□□□□ 0.28
CLN3-254ENST00000637050 CEP250Q9BV73 2442 aa16.78■□□□□ 0.28
CLN3-254ENST00000637050 ANKUB1A6NFN9 424 aa16.78■□□□□ 0.28
CLN3-254ENST00000637050 GMFGO60234 142 aa16.78■□□□□ 0.28
CLN3-254ENST00000637050 SOX14O95416 240 aa16.78■□□□□ 0.28
CLN3-254ENST00000637050 NUDT14O95848 222 aa16.78■□□□□ 0.28
CLN3-254ENST00000637050 IFI30P13284 250 aa16.78■□□□□ 0.28
CLN3-254ENST00000637050 MSX1P28360 303 aa16.78■□□□□ 0.28
CLN3-254ENST00000637050 TPD52P55327 224 aaPredicted RBP16.78■□□□□ 0.28
CLN3-254ENST00000637050 ZNF468Q5VIY5 522 aaPredicted RBP16.78■□□□□ 0.28
CLN3-254ENST00000637050 SLC30A6Q6NXT4 461 aa16.78■□□□□ 0.28
CLN3-254ENST00000637050 TMPRSS11FQ6ZWK6 438 aa16.78■□□□□ 0.28
CLN3-254ENST00000637050 LSRQ86X29 649 aaPredicted RBP16.78■□□□□ 0.28
CLN3-254ENST00000637050 FBLIM1Q8WUP2 373 aa16.78■□□□□ 0.28
CLN3-254ENST00000637050 BPIFA2Q96DR5 249 aa16.78■□□□□ 0.28
CLN3-254ENST00000637050 SGCZQ96LD1 299 aa16.78■□□□□ 0.28
CLN3-254ENST00000637050 HPF1Q9NWY4 346 aa16.78■□□□□ 0.28
CLN3-254ENST00000637050 PPP4R1LQ9P1A2 415 aa16.78■□□□□ 0.28
CLN3-254ENST00000637050 ELOA3DA6NLF2 546 aaPredicted RBP16.77■□□□□ 0.28
CLN3-254ENST00000637050 KPNA4O00629 521 aaPredicted RBP16.77■□□□□ 0.28
CLN3-254ENST00000637050 CDC42EP2O14613 210 aa16.77■□□□□ 0.28
CLN3-254ENST00000637050 CDC40O60508 579 aaKnown RBP eCLIP16.77■□□□□ 0.28
CLN3-254ENST00000637050 IGFBP1P08833 259 aaPredicted RBP16.77■□□□□ 0.28
CLN3-254ENST00000637050 MAKP20794 623 aa16.77■□□□□ 0.28
CLN3-254ENST00000637050 TACR3P29371 465 aa16.77■□□□□ 0.28
CLN3-254ENST00000637050 NUP107P57740 925 aa16.77■□□□□ 0.28
CLN3-254ENST00000637050 CD47Q08722 323 aa16.77■□□□□ 0.28
CLN3-254ENST00000637050 QPRTQ15274 297 aa16.77■□□□□ 0.28
CLN3-254ENST00000637050 ELOA3BQ3SY89 546 aa16.77■□□□□ 0.28
CLN3-254ENST00000637050 OR5M10Q6IEU7 315 aa16.77■□□□□ 0.28
CLN3-254ENST00000637050 KIF18BQ86Y91 864 aa16.77■□□□□ 0.28
CLN3-254ENST00000637050 EGFL6Q8IUX8 553 aa16.77■□□□□ 0.28
CLN3-254ENST00000637050 CDK20Q8IZL9 346 aa16.77■□□□□ 0.28
CLN3-254ENST00000637050 ELOA3Q8NG57 546 aa16.77■□□□□ 0.28
CLN3-254ENST00000637050 TMEM43Q9BTV4 400 aa16.77■□□□□ 0.28
CLN3-254ENST00000637050 ANGPTL4Q9BY76 406 aa16.77■□□□□ 0.28
CLN3-254ENST00000637050 SLC19A3Q9BZV2 496 aa16.77■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 32.9 ms