RNA–Protein interactions for RNA: ENST00000618469.1

BRCA1-228, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 1 (best)

Gene BRCA1, Length 718 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-228ENST00000618469 ZNF524Q96C55 264 aa14.34□□□□□ -0.11
BRCA1-228ENST00000618469 ZNF559Q9BR84 538 aa14.34□□□□□ -0.11
BRCA1-228ENST00000618469 PIGMQ9H3S5 423 aa14.34□□□□□ -0.11
BRCA1-228ENST00000618469 SLC24A3Q9HC58 644 aa14.34□□□□□ -0.11
BRCA1-228ENST00000618469 ST6GALNAC1Q9NSC7 600 aaPredicted RBP14.34□□□□□ -0.11
BRCA1-228ENST00000618469 PAQR5Q9NXK6 330 aaPredicted RBP14.34□□□□□ -0.11
BRCA1-228ENST00000618469 JKAMPQ9P055 326 aa14.34□□□□□ -0.11
BRCA1-228ENST00000618469 KCNN3Q9UGI6 736 aa14.34□□□□□ -0.11
BRCA1-228ENST00000618469 FOXD3Q9UJU5 478 aaPredicted RBP14.34□□□□□ -0.11
BRCA1-228ENST00000618469 MCTS1Q9ULC4 181 aaKnown RBP14.34□□□□□ -0.11
BRCA1-228ENST00000618469 TRIM33Q9UPN9 1127 aa14.34□□□□□ -0.11
BRCA1-228ENST00000618469 TMEM247A6NEH6 219 aa14.33□□□□□ -0.12
BRCA1-228ENST00000618469 AGAP5A6NIR3 686 aa14.33□□□□□ -0.12
BRCA1-228ENST00000618469 GJE1A6NN92 205 aa14.33□□□□□ -0.12
BRCA1-228ENST00000618469 SYT5O00445 386 aa14.33□□□□□ -0.12
BRCA1-228ENST00000618469 ADAMDEC1O15204 470 aa14.33□□□□□ -0.12
BRCA1-228ENST00000618469 SMNDC1O75940 238 aaKnown RBP eCLIP14.33□□□□□ -0.12
BRCA1-228ENST00000618469 SYNGR4O95473 234 aa14.33□□□□□ -0.12
BRCA1-228ENST00000618469 NTN1O95631 604 aa14.33□□□□□ -0.12
BRCA1-228ENST00000618469 CRHP06850 196 aa14.33□□□□□ -0.12
BRCA1-228ENST00000618469 PGCP20142 388 aa14.33□□□□□ -0.12
BRCA1-228ENST00000618469 KLK2P20151 261 aa14.33□□□□□ -0.12
BRCA1-228ENST00000618469 RPS4Y1P22090 263 aaKnown RBP14.33□□□□□ -0.12
BRCA1-228ENST00000618469 RYKP34925 604 aa14.33□□□□□ -0.12
BRCA1-228ENST00000618469 SLC6A8P48029 635 aa14.33□□□□□ -0.12
BRCA1-228ENST00000618469 CRISP3P54108 245 aa14.33□□□□□ -0.12
BRCA1-228ENST00000618469 MAPK11Q15759 364 aa14.33□□□□□ -0.12
BRCA1-228ENST00000618469 SLC25A53Q5H9E4 307 aa14.33□□□□□ -0.12
BRCA1-228ENST00000618469 RPS26P11Q5JNZ5 115 aaPredicted RBP14.33□□□□□ -0.12
BRCA1-228ENST00000618469 PAGE3Q5JUK9 113 aa14.33□□□□□ -0.12
BRCA1-228ENST00000618469 C3orf33Q6P1S2 294 aa14.33□□□□□ -0.12
BRCA1-228ENST00000618469 ZZZ3Q8IYH5 903 aa14.33□□□□□ -0.12
BRCA1-228ENST00000618469 ZNF563Q8TA94 476 aa14.33□□□□□ -0.12
BRCA1-228ENST00000618469 ST8SIA1Q92185 356 aa14.33□□□□□ -0.12
BRCA1-228ENST00000618469 TMEM19Q96HH6 336 aa14.33□□□□□ -0.12
BRCA1-228ENST00000618469 RBM24Q9BX46 236 aaKnown RBP14.33□□□□□ -0.12
BRCA1-228ENST00000618469 TMEM120AQ9BXJ8 343 aa14.33□□□□□ -0.12
BRCA1-228ENST00000618469 LIME1Q9H400 295 aa14.33□□□□□ -0.12
BRCA1-228ENST00000618469 RAD21L1Q9H4I0 556 aa14.33□□□□□ -0.12
BRCA1-228ENST00000618469 RABEP2Q9H5N1 569 aa14.33□□□□□ -0.12
BRCA1-228ENST00000618469 ZNF385DQ9H6B1 395 aa14.33□□□□□ -0.12
BRCA1-228ENST00000618469 MED4Q9NPJ6 270 aa14.33□□□□□ -0.12
BRCA1-228ENST00000618469 CCM2LQ9NUG4 571 aaPredicted RBP14.33□□□□□ -0.12
BRCA1-228ENST00000618469 FGFR1OP2Q9NVK5 253 aa14.33□□□□□ -0.12
BRCA1-228ENST00000618469 GALNT8Q9NY28 637 aa14.33□□□□□ -0.12
BRCA1-228ENST00000618469 SLC25A37Q9NYZ2 338 aa14.33□□□□□ -0.12
BRCA1-228ENST00000618469 CALML5Q9NZT1 146 aa14.33□□□□□ -0.12
BRCA1-228ENST00000618469 CLIC1O00299 241 aa14.32□□□□□ -0.12
BRCA1-228ENST00000618469 ETV2O00321 342 aaPredicted RBP14.32□□□□□ -0.12
BRCA1-228ENST00000618469 EFNA2O43921 213 aa14.32□□□□□ -0.12
BRCA1-228ENST00000618469 DNAJA2O60884 412 aa14.32□□□□□ -0.12
BRCA1-228ENST00000618469 PLGP00747 810 aaPredicted RBP14.32□□□□□ -0.12
BRCA1-228ENST00000618469 DBIP07108 87 aaKnown RBP14.32□□□□□ -0.12
BRCA1-228ENST00000618469 NUDT7P0C024 238 aa14.32□□□□□ -0.12
BRCA1-228ENST00000618469 TROVE2P10155 538 aaKnown RBP eCLIP14.32□□□□□ -0.12
BRCA1-228ENST00000618469 IL7RP16871 459 aa14.32□□□□□ -0.12
BRCA1-228ENST00000618469 SLC7A1P30825 629 aa14.32□□□□□ -0.12
BRCA1-228ENST00000618469 PEX19P40855 299 aa14.32□□□□□ -0.12
BRCA1-228ENST00000618469 KIR2DL3P43628 341 aa14.32□□□□□ -0.12
BRCA1-228ENST00000618469 SESN3P58005 492 aa14.32□□□□□ -0.12
BRCA1-228ENST00000618469 EEF1A1P68104 462 aaKnown RBP14.32□□□□□ -0.12
BRCA1-228ENST00000618469 GUCY1A3Q02108 690 aa14.32□□□□□ -0.12
BRCA1-228ENST00000618469 MERTKQ12866 999 aa14.32□□□□□ -0.12
BRCA1-228ENST00000618469 FADDQ13158 208 aa14.32□□□□□ -0.12
BRCA1-228ENST00000618469 GNA13Q14344 377 aa14.32□□□□□ -0.12
BRCA1-228ENST00000618469 RGNQ15493 299 aa14.32□□□□□ -0.12
BRCA1-228ENST00000618469 ZNF239Q16600 458 aaKnown RBP14.32□□□□□ -0.12
BRCA1-228ENST00000618469 TMEM176BQ3YBM2 270 aaPredicted RBP14.32□□□□□ -0.12
BRCA1-228ENST00000618469 LRIF1Q5T3J3 769 aa14.32□□□□□ -0.12
BRCA1-228ENST00000618469 MRPL2Q5T653 305 aaKnown RBP14.32□□□□□ -0.12
BRCA1-228ENST00000618469 EEF1A1P5Q5VTE0 462 aa14.32□□□□□ -0.12
BRCA1-228ENST00000618469 AP1ARQ63HQ0 302 aa14.32□□□□□ -0.12
BRCA1-228ENST00000618469 TGIF2LYQ8IUE0 185 aa14.32□□□□□ -0.12
BRCA1-228ENST00000618469 MSRB3Q8IXL7 192 aa14.32□□□□□ -0.12
BRCA1-228ENST00000618469 CMIPQ8IY22 773 aa14.32□□□□□ -0.12
BRCA1-228ENST00000618469 PEX5LQ8IYB4 626 aa14.32□□□□□ -0.12
BRCA1-228ENST00000618469 SLC38A5Q8WUX1 472 aa14.32□□□□□ -0.12
BRCA1-228ENST00000618469 TMEM234Q8WY98 164 aa14.32□□□□□ -0.12
BRCA1-228ENST00000618469 CNOT9Q92600 299 aaKnown RBP14.32□□□□□ -0.12
BRCA1-228ENST00000618469 SRXN1Q9BYN0 137 aa14.32□□□□□ -0.12
BRCA1-228ENST00000618469 COQ10BQ9H8M1 238 aa14.32□□□□□ -0.12
BRCA1-228ENST00000618469 SLC52A3Q9NQ40 469 aa14.32□□□□□ -0.12
BRCA1-228ENST00000618469 EXOSC3Q9NQT5 275 aaKnown RBP14.32□□□□□ -0.12
BRCA1-228ENST00000618469 TMEM45AQ9NWC5 275 aa14.32□□□□□ -0.12
BRCA1-228ENST00000618469 THUMPD1Q9NXG2 353 aaKnown RBP14.32□□□□□ -0.12
BRCA1-228ENST00000618469 DNAJB12Q9NXW2 375 aaKnown RBP14.32□□□□□ -0.12
BRCA1-228ENST00000618469 SLAMF8Q9P0V8 285 aa14.32□□□□□ -0.12
BRCA1-228ENST00000618469 CLEC4AQ9UMR7 237 aa14.32□□□□□ -0.12
BRCA1-228ENST00000618469 ABCA4P78363 2273 aa14.32□□□□□ -0.12
BRCA1-228ENST00000618469 DSPPQ9NZW4 1301 aa14.32□□□□□ -0.12
BRCA1-228ENST00000618469 AP3D1O14617 1153 aa14.31□□□□□ -0.12
BRCA1-228ENST00000618469 VIMP08670 466 aaKnown RBP14.31□□□□□ -0.12
BRCA1-228ENST00000618469 TFPTP0C1Z6 253 aa14.31□□□□□ -0.12
BRCA1-228ENST00000618469 NID1P14543 1247 aa14.31□□□□□ -0.12
BRCA1-228ENST00000618469 KIR2DL2P43627 348 aaPredicted RBP14.31□□□□□ -0.12
BRCA1-228ENST00000618469 SF3A3Q12874 501 aaKnown RBP eCLIP14.31□□□□□ -0.12
BRCA1-228ENST00000618469 LIN52Q52LA3 116 aa14.31□□□□□ -0.12
BRCA1-228ENST00000618469 ZNF836Q6ZNA1 936 aa14.31□□□□□ -0.12
BRCA1-228ENST00000618469 PLEKHM3Q6ZWE6 761 aa14.31□□□□□ -0.12
BRCA1-228ENST00000618469 KIF18BQ86Y91 864 aa14.31□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 47.3 ms