RNA–Protein interactions for RNA: ENST00000600868.5

UPF1-211, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 580 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-211ENST00000600868 TEX19Q8NA77 164 aa13.02□□□□□ -0.33
UPF1-211ENST00000600868 Q8NA96 180 aa13.02□□□□□ -0.33
UPF1-211ENST00000600868 ADAMTS16Q8TE57 1224 aa13.02□□□□□ -0.33
UPF1-211ENST00000600868 DNAJA4Q8WW22 397 aaPredicted RBP13.02□□□□□ -0.33
UPF1-211ENST00000600868 PYDC1Q8WXC3 89 aa13.02□□□□□ -0.33
UPF1-211ENST00000600868 SLC39A7Q92504 469 aa13.02□□□□□ -0.33
UPF1-211ENST00000600868 ZNF524Q96C55 264 aa13.02□□□□□ -0.33
UPF1-211ENST00000600868 MRGPRX4Q96LA9 322 aa13.02□□□□□ -0.33
UPF1-211ENST00000600868 PRRC1Q96M27 445 aa13.02□□□□□ -0.33
UPF1-211ENST00000600868 OR2B2Q9GZK3 357 aa13.02□□□□□ -0.33
UPF1-211ENST00000600868 ZDHHC11Q9H8X9 412 aa13.02□□□□□ -0.33
UPF1-211ENST00000600868 A4GNTQ9UNA3 340 aa13.02□□□□□ -0.33
UPF1-211ENST00000600868 NTNG1Q9Y2I2 539 aa13.02□□□□□ -0.33
UPF1-211ENST00000600868 PIEZO2Q9H5I5 2752 aa13.02□□□□□ -0.33
UPF1-211ENST00000600868 A0A0B4J2E0 115 aa13.01□□□□□ -0.33
UPF1-211ENST00000600868 A0A1B0GWA3 101 aa13.01□□□□□ -0.33
UPF1-211ENST00000600868 A0A1B0GX12 115 aa13.01□□□□□ -0.33
UPF1-211ENST00000600868 CPSF4LA6NMK7 179 aaKnown RBP13.01□□□□□ -0.33
UPF1-211ENST00000600868 J3KTA2 159 aa13.01□□□□□ -0.33
UPF1-211ENST00000600868 FFAR1O14842 300 aa13.01□□□□□ -0.33
UPF1-211ENST00000600868 PRSS23O95084 383 aa13.01□□□□□ -0.33
UPF1-211ENST00000600868 MT-ND1P03886 318 aa13.01□□□□□ -0.33
UPF1-211ENST00000600868 THRBP10828 461 aa13.01□□□□□ -0.33
UPF1-211ENST00000600868 ZNF17P17021 662 aa13.01□□□□□ -0.33
UPF1-211ENST00000600868 ZNF24P17028 368 aa13.01□□□□□ -0.33
UPF1-211ENST00000600868 IFNA8P32881 189 aa13.01□□□□□ -0.33
UPF1-211ENST00000600868 MAGEA5P43359 124 aa13.01□□□□□ -0.33
UPF1-211ENST00000600868 HTR3AP46098 478 aa13.01□□□□□ -0.33
UPF1-211ENST00000600868 YAP1P46937 504 aaKnown RBP13.01□□□□□ -0.33
UPF1-211ENST00000600868 TAS2R41P59536 307 aa13.01□□□□□ -0.33
UPF1-211ENST00000600868 KLRB1Q12918 225 aa13.01□□□□□ -0.33
UPF1-211ENST00000600868 PIN1Q13526 163 aaPredicted RBP13.01□□□□□ -0.33
UPF1-211ENST00000600868 SLC10A1Q14973 349 aa13.01□□□□□ -0.33
UPF1-211ENST00000600868 TMEM44Q2T9K0 475 aa13.01□□□□□ -0.33
UPF1-211ENST00000600868 SWT1Q5T5J6 900 aaKnown RBP13.01□□□□□ -0.33
UPF1-211ENST00000600868 AAGABQ6PD74 315 aa13.01□□□□□ -0.33
UPF1-211ENST00000600868 ULK3Q6PHR2 472 aa13.01□□□□□ -0.33
UPF1-211ENST00000600868 PLEKHM3Q6ZWE6 761 aa13.01□□□□□ -0.33
UPF1-211ENST00000600868 GRINAQ7Z429 371 aa13.01□□□□□ -0.33
UPF1-211ENST00000600868 ZNF605Q86T29 641 aa13.01□□□□□ -0.33
UPF1-211ENST00000600868 OFCC1Q8IZS5 231 aa13.01□□□□□ -0.33
UPF1-211ENST00000600868 CADM2Q8N3J6 435 aa13.01□□□□□ -0.33
UPF1-211ENST00000600868 FAM83FQ8NEG4 500 aaPredicted RBP13.01□□□□□ -0.33
UPF1-211ENST00000600868 TAAR6Q96RI8 345 aa13.01□□□□□ -0.33
UPF1-211ENST00000600868 PIP5K1AQ99755 562 aa13.01□□□□□ -0.33
UPF1-211ENST00000600868 C12orf10Q9HB07 376 aa13.01□□□□□ -0.33
UPF1-211ENST00000600868 S100A14Q9HCY8 104 aa13.01□□□□□ -0.33
UPF1-211ENST00000600868 ACKR4Q9NPB9 350 aa13.01□□□□□ -0.33
UPF1-211ENST00000600868 RPS6KB2Q9UBS0 482 aa13.01□□□□□ -0.33
UPF1-211ENST00000600868 RIMS3Q9UJD0 308 aa13.01□□□□□ -0.33
UPF1-211ENST00000600868 VDAC3Q9Y277 283 aa13.01□□□□□ -0.33
UPF1-211ENST00000600868 FAM166BA8MTA8 275 aa13□□□□□ -0.33
UPF1-211ENST00000600868 H3BNX3 289 aa13□□□□□ -0.33
UPF1-211ENST00000600868 HNRNPRO43390 633 aaKnown RBP13□□□□□ -0.33
UPF1-211ENST00000600868 TRAPPC6AO75865 159 aa13□□□□□ -0.33
UPF1-211ENST00000600868 CRYABP02511 175 aaKnown RBP13□□□□□ -0.33
UPF1-211ENST00000600868 THY1P04216 161 aa13□□□□□ -0.33
UPF1-211ENST00000600868 FCGR1AP12314 374 aa13□□□□□ -0.33
UPF1-211ENST00000600868 TACR3P29371 465 aa13□□□□□ -0.33
UPF1-211ENST00000600868 APOBEC1P41238 236 aaKnown RBP13□□□□□ -0.33
UPF1-211ENST00000600868 POLR2HP52434 150 aaKnown RBP13□□□□□ -0.33
UPF1-211ENST00000600868 ST3GAL3Q11203 375 aa13□□□□□ -0.33
UPF1-211ENST00000600868 FOXF1Q12946 379 aa13□□□□□ -0.33
UPF1-211ENST00000600868 LY6DQ14210 128 aa13□□□□□ -0.33
UPF1-211ENST00000600868 TOMM20Q15388 145 aa13□□□□□ -0.33
UPF1-211ENST00000600868 ALG10BQ5I7T1 473 aa13□□□□□ -0.33
UPF1-211ENST00000600868 GDF7Q7Z4P5 450 aa13□□□□□ -0.33
UPF1-211ENST00000600868 GTPBP8Q8N3Z3 284 aaPredicted RBP13□□□□□ -0.33
UPF1-211ENST00000600868 PIK3C3Q8NEB9 887 aa13□□□□□ -0.33
UPF1-211ENST00000600868 POC1BQ8TC44 478 aa13□□□□□ -0.33
UPF1-211ENST00000600868 STMN2Q93045 179 aa13□□□□□ -0.33
UPF1-211ENST00000600868 C3orf49Q96BT1 292 aa13□□□□□ -0.33
UPF1-211ENST00000600868 SLC41A3Q96GZ6 507 aa13□□□□□ -0.33
UPF1-211ENST00000600868 DHRS1Q96LJ7 313 aa13□□□□□ -0.33
UPF1-211ENST00000600868 FNDC11Q9BVV2 318 aa13□□□□□ -0.33
UPF1-211ENST00000600868 NMNAT1Q9HAN9 279 aaPredicted RBP13□□□□□ -0.33
UPF1-211ENST00000600868 CTPS2Q9NRF8 586 aa13□□□□□ -0.33
UPF1-211ENST00000600868 SELENONQ9NZV5 590 aa13□□□□□ -0.33
UPF1-211ENST00000600868 NCKAP5O14513 1909 aa13□□□□□ -0.33
UPF1-211ENST00000600868 H0YHG0 523 aa12.99□□□□□ -0.33
UPF1-211ENST00000600868 TFECO14948 347 aaPredicted RBP12.99□□□□□ -0.33
UPF1-211ENST00000600868 ADAMDEC1O15204 470 aa12.99□□□□□ -0.33
UPF1-211ENST00000600868 CHP2O43745 196 aa12.99□□□□□ -0.33
UPF1-211ENST00000600868 TIPRLO75663 272 aa12.99□□□□□ -0.33
UPF1-211ENST00000600868 KRT36O76013 467 aa12.99□□□□□ -0.33
UPF1-211ENST00000600868 DIRAS1O95057 198 aa12.99□□□□□ -0.33
UPF1-211ENST00000600868 LYPD3O95274 346 aa12.99□□□□□ -0.33
UPF1-211ENST00000600868 CST1P01037 141 aa12.99□□□□□ -0.33
UPF1-211ENST00000600868 H1F0P07305 194 aaKnown RBP12.99□□□□□ -0.33
UPF1-211ENST00000600868 PNMTP11086 282 aa12.99□□□□□ -0.33
UPF1-211ENST00000600868 MAP2K6P52564 334 aa12.99□□□□□ -0.33
UPF1-211ENST00000600868 CDH12P55289 794 aa12.99□□□□□ -0.33
UPF1-211ENST00000600868 SMIM11AP58511 58 aa12.99□□□□□ -0.33
UPF1-211ENST00000600868 B3GALT5-AS1P59052 145 aa12.99□□□□□ -0.33
UPF1-211ENST00000600868 ALDH6A1Q02252 535 aaKnown RBP12.99□□□□□ -0.33
UPF1-211ENST00000600868 MERTKQ12866 999 aa12.99□□□□□ -0.33
UPF1-211ENST00000600868 OR2T5Q6IEZ7 315 aa12.99□□□□□ -0.33
UPF1-211ENST00000600868 ATG4DQ86TL0 474 aaPredicted RBP12.99□□□□□ -0.33
UPF1-211ENST00000600868 YRDCQ86U90 279 aaKnown RBP12.99□□□□□ -0.33
UPF1-211ENST00000600868 SIAH3Q8IW03 269 aa12.99□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 23.7 ms