RNA–Protein interactions for RNA: ENST00000594504.5

UPF1-203, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 559 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-203ENST00000594504 Q96MF0 132 aa11.19□□□□□ -0.62
UPF1-203ENST00000594504 SLC39A3Q9BRY0 314 aa11.19□□□□□ -0.62
UPF1-203ENST00000594504 NSRP1Q9H0G5 558 aaKnown RBP11.19□□□□□ -0.62
UPF1-203ENST00000594504 RAD21L1Q9H4I0 556 aa11.19□□□□□ -0.62
UPF1-203ENST00000594504 ZNF226Q9NYT6 803 aa11.19□□□□□ -0.62
UPF1-203ENST00000594504 LEF1Q9UJU2 399 aaPredicted RBP11.19□□□□□ -0.62
UPF1-203ENST00000594504 PROCRQ9UNN8 238 aa11.19□□□□□ -0.62
UPF1-203ENST00000594504 LIPT1Q9Y234 373 aa11.19□□□□□ -0.62
UPF1-203ENST00000594504 NDUFAF1Q9Y375 327 aa11.19□□□□□ -0.62
UPF1-203ENST00000594504 H3BNH8 94 aa11.18□□□□□ -0.62
UPF1-203ENST00000594504 H7C1Q1 480 aa11.18□□□□□ -0.62
UPF1-203ENST00000594504 EIF1AYO14602 144 aaKnown RBP11.18□□□□□ -0.62
UPF1-203ENST00000594504 ANGPT2O15123 496 aa11.18□□□□□ -0.62
UPF1-203ENST00000594504 ARHGEF9O43307 516 aa11.18□□□□□ -0.62
UPF1-203ENST00000594504 KIAA0513O60268 411 aa11.18□□□□□ -0.62
UPF1-203ENST00000594504 FCMRO60667 390 aa11.18□□□□□ -0.62
UPF1-203ENST00000594504 PLAUP00749 431 aa11.18□□□□□ -0.62
UPF1-203ENST00000594504 THBDP07204 575 aa11.18□□□□□ -0.62
UPF1-203ENST00000594504 CD8BP10966 210 aa11.18□□□□□ -0.62
UPF1-203ENST00000594504 LSP1P33241 339 aa11.18□□□□□ -0.62
UPF1-203ENST00000594504 CRATP43155 626 aa11.18□□□□□ -0.62
UPF1-203ENST00000594504 EIF1AXP47813 144 aaKnown RBP11.18□□□□□ -0.62
UPF1-203ENST00000594504 MVDP53602 400 aa11.18□□□□□ -0.62
UPF1-203ENST00000594504 RPS3AP61247 264 aaKnown RBP11.18□□□□□ -0.62
UPF1-203ENST00000594504 HPCAP84074 193 aa11.18□□□□□ -0.62
UPF1-203ENST00000594504 FUT5Q11128 374 aa11.18□□□□□ -0.62
UPF1-203ENST00000594504 GUSBP1Q15486 140 aa11.18□□□□□ -0.62
UPF1-203ENST00000594504 GPR68Q15743 365 aa11.18□□□□□ -0.62
UPF1-203ENST00000594504 TMEM44Q2T9K0 475 aa11.18□□□□□ -0.62
UPF1-203ENST00000594504 COX20Q5RI15 118 aa11.18□□□□□ -0.62
UPF1-203ENST00000594504 DDX59Q5T1V6 619 aaKnown RBP eCLIP11.18□□□□□ -0.62
UPF1-203ENST00000594504 SPATA21Q7Z572 469 aa11.18□□□□□ -0.62
UPF1-203ENST00000594504 MTERF4Q7Z6M4 381 aaKnown RBP11.18□□□□□ -0.62
UPF1-203ENST00000594504 GGNQ86UU5 652 aa11.18□□□□□ -0.62
UPF1-203ENST00000594504 METTL25Q8N6Q8 603 aa11.18□□□□□ -0.62
UPF1-203ENST00000594504 PIGTQ969N2 578 aa11.18□□□□□ -0.62
UPF1-203ENST00000594504 ARSGQ96EG1 525 aa11.18□□□□□ -0.62
UPF1-203ENST00000594504 TRNT1Q96Q11 434 aaKnown RBP11.18□□□□□ -0.62
UPF1-203ENST00000594504 CCL19Q99731 98 aa11.18□□□□□ -0.62
UPF1-203ENST00000594504 PIP5K1AQ99755 562 aa11.18□□□□□ -0.62
UPF1-203ENST00000594504 PRRG4Q9BZD6 226 aa11.18□□□□□ -0.62
UPF1-203ENST00000594504 SAP130Q9H0E3 1048 aa11.18□□□□□ -0.62
UPF1-203ENST00000594504 SAR1AQ9NR31 198 aa11.18□□□□□ -0.62
UPF1-203ENST00000594504 THUMPD1Q9NXG2 353 aaKnown RBP11.18□□□□□ -0.62
UPF1-203ENST00000594504 WDR45Q9Y484 360 aa11.18□□□□□ -0.62
UPF1-203ENST00000594504 DTNAQ9Y4J8 743 aa11.18□□□□□ -0.62
UPF1-203ENST00000594504 GMEB1Q9Y692 573 aa11.18□□□□□ -0.62
UPF1-203ENST00000594504 AP4B1Q9Y6B7 739 aa11.18□□□□□ -0.62
UPF1-203ENST00000594504 RAI1Q7Z5J4 1906 aaPredicted RBP11.17□□□□□ -0.62
UPF1-203ENST00000594504 NUP214P35658 2090 aaPredicted RBP11.17□□□□□ -0.62
UPF1-203ENST00000594504 TRBV5-3A0A0A0MS03 114 aa11.17□□□□□ -0.62
UPF1-203ENST00000594504 NPIPA5A0A0B4J1W7 369 aa11.17□□□□□ -0.62
UPF1-203ENST00000594504 GMNCA6NCL1 334 aa11.17□□□□□ -0.62
UPF1-203ENST00000594504 TRIM64A6NGJ6 449 aa11.17□□□□□ -0.62
UPF1-203ENST00000594504 TRIM64BA6NI03 449 aa11.17□□□□□ -0.62
UPF1-203ENST00000594504 NPIPA7E9PJI5 369 aa11.17□□□□□ -0.62
UPF1-203ENST00000594504 LINC01387J3KSC0 135 aa11.17□□□□□ -0.62
UPF1-203ENST00000594504 CLIC1O00299 241 aa11.17□□□□□ -0.62
UPF1-203ENST00000594504 SLC22A2O15244 555 aa11.17□□□□□ -0.62
UPF1-203ENST00000594504 H6PDO95479 791 aa11.17□□□□□ -0.62
UPF1-203ENST00000594504 HEXAP06865 529 aa11.17□□□□□ -0.62
UPF1-203ENST00000594504 NPIPA8P0DM63 369 aa11.17□□□□□ -0.62
UPF1-203ENST00000594504 ETFAP13804 333 aa11.17□□□□□ -0.62
UPF1-203ENST00000594504 PPIBP23284 216 aaKnown RBP11.17□□□□□ -0.62
UPF1-203ENST00000594504 SEC24CP53992 1094 aa11.17□□□□□ -0.62
UPF1-203ENST00000594504 GYS2P54840 703 aa11.17□□□□□ -0.62
UPF1-203ENST00000594504 DSTNP60981 165 aa11.17□□□□□ -0.62
UPF1-203ENST00000594504 GNGT1P63211 74 aa11.17□□□□□ -0.62
UPF1-203ENST00000594504 FADDQ13158 208 aa11.17□□□□□ -0.62
UPF1-203ENST00000594504 RGNQ15493 299 aa11.17□□□□□ -0.62
UPF1-203ENST00000594504 MAPRE2Q15555 327 aa11.17□□□□□ -0.62
UPF1-203ENST00000594504 CD226Q15762 336 aa11.17□□□□□ -0.62
UPF1-203ENST00000594504 ZNF141Q15928 474 aa11.17□□□□□ -0.62
UPF1-203ENST00000594504 GLYR1Q49A26 553 aaPredicted RBP11.17□□□□□ -0.62
UPF1-203ENST00000594504 GPAT3Q53EU6 434 aa11.17□□□□□ -0.62
UPF1-203ENST00000594504 TYW3Q6IPR3 259 aaKnown RBP11.17□□□□□ -0.62
UPF1-203ENST00000594504 FRRS1Q6ZNA5 592 aa11.17□□□□□ -0.62
UPF1-203ENST00000594504 FAM214BQ7L5A3 538 aa11.17□□□□□ -0.62
UPF1-203ENST00000594504 YTHDF3Q7Z739 585 aaKnown RBP11.17□□□□□ -0.62
UPF1-203ENST00000594504 MSRB3Q8IXL7 192 aa11.17□□□□□ -0.62
UPF1-203ENST00000594504 LRRC75A-AS1Q8N1F1 130 aa11.17□□□□□ -0.62
UPF1-203ENST00000594504 ZNF619Q8N2I2 560 aa11.17□□□□□ -0.62
UPF1-203ENST00000594504 DPP10Q8N608 796 aa11.17□□□□□ -0.62
UPF1-203ENST00000594504 ZNF614Q8N883 585 aa11.17□□□□□ -0.62
UPF1-203ENST00000594504 PHOSPHO1Q8TCT1 267 aa11.17□□□□□ -0.62
UPF1-203ENST00000594504 PMM1Q92871 262 aa11.17□□□□□ -0.62
UPF1-203ENST00000594504 PLSCR4Q9NRQ2 329 aa11.17□□□□□ -0.62
UPF1-203ENST00000594504 SLC25A37Q9NYZ2 338 aa11.17□□□□□ -0.62
UPF1-203ENST00000594504 VAPAQ9P0L0 249 aa11.17□□□□□ -0.62
UPF1-203ENST00000594504 SLAMF8Q9P0V8 285 aa11.17□□□□□ -0.62
UPF1-203ENST00000594504 P2RX2Q9UBL9 471 aa11.17□□□□□ -0.62
UPF1-203ENST00000594504 MKLN1Q9UL63 735 aa11.17□□□□□ -0.62
UPF1-203ENST00000594504 ZNF175Q9Y473 711 aa11.17□□□□□ -0.62
UPF1-203ENST00000594504 DSCAMO60469 2012 aa11.17□□□□□ -0.62
UPF1-203ENST00000594504 HRNRQ86YZ3 2850 aaPredicted RBP11.17□□□□□ -0.62
UPF1-203ENST00000594504 PRAMEF27A3QJZ7 478 aa11.16□□□□□ -0.62
UPF1-203ENST00000594504 SERINC4A6NH21 518 aa11.16□□□□□ -0.62
UPF1-203ENST00000594504 KLF4O43474 513 aa11.16□□□□□ -0.62
UPF1-203ENST00000594504 CXCL13O43927 109 aa11.16□□□□□ -0.62
UPF1-203ENST00000594504 CCDC22O60826 627 aa11.16□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms