RNA–Protein interactions for RNA: ENST00000578700.5

SS18-210, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 5

Gene SS18, Length 575 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-210ENST00000578700 THAP5Q7Z6K1 395 aa9.31□□□□□ -0.92
SS18-210ENST00000578700 GALNT5Q7Z7M9 940 aa9.31□□□□□ -0.92
SS18-210ENST00000578700 VRK2Q86Y07 508 aa9.31□□□□□ -0.92
SS18-210ENST00000578700 ZNF527Q8NB42 609 aa9.31□□□□□ -0.92
SS18-210ENST00000578700 MORN4Q8NDC4 146 aa9.31□□□□□ -0.92
SS18-210ENST00000578700 TOR1AIP2Q8NFQ8 470 aa9.31□□□□□ -0.92
SS18-210ENST00000578700 OIT3Q8WWZ8 545 aa9.31□□□□□ -0.92
SS18-210ENST00000578700 SLC38A4Q969I6 547 aa9.31□□□□□ -0.92
SS18-210ENST00000578700 VSTM2LQ96N03 204 aa9.31□□□□□ -0.92
SS18-210ENST00000578700 ARHGDIGQ99819 225 aa9.31□□□□□ -0.92
SS18-210ENST00000578700 PSD2Q9BQI7 771 aa9.31□□□□□ -0.92
SS18-210ENST00000578700 OR8D2Q9GZM6 311 aa9.31□□□□□ -0.92
SS18-210ENST00000578700 SAP130Q9H0E3 1048 aa9.31□□□□□ -0.92
SS18-210ENST00000578700 QRSL1Q9H0R6 528 aaKnown RBP9.31□□□□□ -0.92
SS18-210ENST00000578700 ANKRD19PQ9H560 264 aa9.31□□□□□ -0.92
SS18-210ENST00000578700 ZNF696Q9H7X3 374 aa9.31□□□□□ -0.92
SS18-210ENST00000578700 KLHL1Q9NR64 748 aa9.31□□□□□ -0.92
SS18-210ENST00000578700 ACER3Q9NUN7 267 aa9.31□□□□□ -0.92
SS18-210ENST00000578700 UBAP1Q9NZ09 502 aa9.31□□□□□ -0.92
SS18-210ENST00000578700 BLOC1S6Q9UL45 172 aa9.31□□□□□ -0.92
SS18-210ENST00000578700 MGAT4BQ9UQ53 548 aa9.31□□□□□ -0.92
SS18-210ENST00000578700 GMPPBQ9Y5P6 360 aa9.31□□□□□ -0.92
SS18-210ENST00000578700 IGHV1-45A0A0A0MS14 117 aa9.3□□□□□ -0.92
SS18-210ENST00000578700 A0A1W2PRQ8 180 aa9.3□□□□□ -0.92
SS18-210ENST00000578700 OR5H15A6NDH6 313 aa9.3□□□□□ -0.92
SS18-210ENST00000578700 NPIPA5E9PKD4 350 aa9.3□□□□□ -0.92
SS18-210ENST00000578700 J3KTA2 159 aa9.3□□□□□ -0.92
SS18-210ENST00000578700 DLGAP1O14490 977 aa9.3□□□□□ -0.92
SS18-210ENST00000578700 SLC16A6O15403 523 aa9.3□□□□□ -0.92
SS18-210ENST00000578700 OR10H3O60404 316 aa9.3□□□□□ -0.92
SS18-210ENST00000578700 NME6O75414 186 aaPredicted RBP9.3□□□□□ -0.92
SS18-210ENST00000578700 KCNK2O95069 426 aa9.3□□□□□ -0.92
SS18-210ENST00000578700 ADAP00813 363 aa9.3□□□□□ -0.92
SS18-210ENST00000578700 PIGAP37287 484 aa9.3□□□□□ -0.92
SS18-210ENST00000578700 MAP3K8P41279 467 aa9.3□□□□□ -0.92
SS18-210ENST00000578700 PPICP45877 212 aa9.3□□□□□ -0.92
SS18-210ENST00000578700 DAPP51397 102 aa9.3□□□□□ -0.92
SS18-210ENST00000578700 TOP3AQ13472 1001 aaPredicted RBP9.3□□□□□ -0.92
SS18-210ENST00000578700 DGCR6Q14129 220 aa9.3□□□□□ -0.92
SS18-210ENST00000578700 TRAM2Q15035 370 aa9.3□□□□□ -0.92
SS18-210ENST00000578700 ZNF766Q5HY98 468 aa9.3□□□□□ -0.92
SS18-210ENST00000578700 RNF220Q5VTB9 566 aa9.3□□□□□ -0.92
SS18-210ENST00000578700 FCRLBQ6BAA4 426 aa9.3□□□□□ -0.92
SS18-210ENST00000578700 SPNS3Q6ZMD2 512 aa9.3□□□□□ -0.92
SS18-210ENST00000578700 C3P1Q6ZMU1 363 aa9.3□□□□□ -0.92
SS18-210ENST00000578700 MEX3BQ6ZN04 569 aaKnown RBP9.3□□□□□ -0.92
SS18-210ENST00000578700 ZNF836Q6ZNA1 936 aa9.3□□□□□ -0.92
SS18-210ENST00000578700 OLIG3Q7RTU3 272 aa9.3□□□□□ -0.92
SS18-210ENST00000578700 HMGN2P46Q86SG4 172 aa9.3□□□□□ -0.92
SS18-210ENST00000578700 SLC5A8Q8N695 610 aa9.3□□□□□ -0.92
SS18-210ENST00000578700 ZNF614Q8N883 585 aa9.3□□□□□ -0.92
SS18-210ENST00000578700 SIMC1Q8NDZ2 872 aa9.3□□□□□ -0.92
SS18-210ENST00000578700 PLPP5Q8NEB5 264 aa9.3□□□□□ -0.92
SS18-210ENST00000578700 OR4C15Q8NGM1 316 aa9.3□□□□□ -0.92
SS18-210ENST00000578700 C16orf52Q8NHV5 167 aa9.3□□□□□ -0.92
SS18-210ENST00000578700 SLC2A12Q8TD20 617 aa9.3□□□□□ -0.92
SS18-210ENST00000578700 PTPMT1Q8WUK0 201 aaPredicted RBP9.3□□□□□ -0.92
SS18-210ENST00000578700 HOXB13Q92826 284 aaPredicted RBP9.3□□□□□ -0.92
SS18-210ENST00000578700 TSLPQ969D9 159 aa9.3□□□□□ -0.92
SS18-210ENST00000578700 POM121Q96HA1 1249 aa9.3□□□□□ -0.92
SS18-210ENST00000578700 MUS81Q96NY9 551 aa9.3□□□□□ -0.92
SS18-210ENST00000578700 FEVQ99581 238 aa9.3□□□□□ -0.92
SS18-210ENST00000578700 MRPS26Q9BYN8 205 aaKnown RBP9.3□□□□□ -0.92
SS18-210ENST00000578700 VN1R1Q9GZP7 353 aa9.3□□□□□ -0.92
SS18-210ENST00000578700 ST6GALNAC1Q9NSC7 600 aaPredicted RBP9.3□□□□□ -0.92
SS18-210ENST00000578700 ANKRD10Q9NXR5 420 aa9.3□□□□□ -0.92
SS18-210ENST00000578700 SELENONQ9NZV5 590 aa9.3□□□□□ -0.92
SS18-210ENST00000578700 RHCGQ9UBD6 479 aa9.3□□□□□ -0.92
SS18-210ENST00000578700 TMEFF2Q9UIK5 374 aaPredicted RBP9.3□□□□□ -0.92
SS18-210ENST00000578700 CBLCQ9ULV8 474 aa9.3□□□□□ -0.92
SS18-210ENST00000578700 NPIPA1Q9UND3 350 aa9.3□□□□□ -0.92
SS18-210ENST00000578700 HSPE1-MOB4S4R3N1 261 aa9.3□□□□□ -0.92
SS18-210ENST00000578700 VPS13CQ709C8 3753 aa9.29□□□□□ -0.92
SS18-210ENST00000578700 DNHD1Q96M86 4753 aa9.29□□□□□ -0.92
SS18-210ENST00000578700 IGLV3-12A0A075B6K2 115 aa9.29□□□□□ -0.92
SS18-210ENST00000578700 IGHV3-20A0A0C4DH32 117 aa9.29□□□□□ -0.92
SS18-210ENST00000578700 C2orf92A0A1B0GVN3 265 aa9.29□□□□□ -0.92
SS18-210ENST00000578700 GXYLT2A0PJZ3 443 aa9.29□□□□□ -0.92
SS18-210ENST00000578700 OR2W5A6NFC9 320 aa9.29□□□□□ -0.92
SS18-210ENST00000578700 PRAMEF25A6NGN4 478 aa9.29□□□□□ -0.92
SS18-210ENST00000578700 H3BNH8 94 aa9.29□□□□□ -0.92
SS18-210ENST00000578700 OR5F1O95221 314 aa9.29□□□□□ -0.92
SS18-210ENST00000578700 CLPTM1O96005 669 aa9.29□□□□□ -0.92
SS18-210ENST00000578700 CYP4B1P13584 511 aa9.29□□□□□ -0.92
SS18-210ENST00000578700 ICAM2P13598 275 aa9.29□□□□□ -0.92
SS18-210ENST00000578700 AGAP20933 346 aa9.29□□□□□ -0.92
SS18-210ENST00000578700 GSTM3P21266 225 aa9.29□□□□□ -0.92
SS18-210ENST00000578700 DRD5P21918 477 aa9.29□□□□□ -0.92
SS18-210ENST00000578700 LCN1P31025 176 aa9.29□□□□□ -0.92
SS18-210ENST00000578700 SOX18P35713 384 aa9.29□□□□□ -0.92
SS18-210ENST00000578700 SLC37A1P57057 533 aa9.29□□□□□ -0.92
SS18-210ENST00000578700 NUP107P57740 925 aa9.29□□□□□ -0.92
SS18-210ENST00000578700 ESRRGP62508 458 aa9.29□□□□□ -0.92
SS18-210ENST00000578700 EEF1A1P68104 462 aaKnown RBP9.29□□□□□ -0.92
SS18-210ENST00000578700 PSG6Q00889 435 aa9.29□□□□□ -0.92
SS18-210ENST00000578700 IL5RAQ01344 420 aa9.29□□□□□ -0.92
SS18-210ENST00000578700 ALDH6A1Q02252 535 aaKnown RBP9.29□□□□□ -0.92
SS18-210ENST00000578700 FOXD4Q12950 439 aaPredicted RBP9.29□□□□□ -0.92
SS18-210ENST00000578700 NPRL3Q12980 569 aa9.29□□□□□ -0.92
SS18-210ENST00000578700 PIN1Q13526 163 aaPredicted RBP9.29□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms