RNA–Protein interactions for RNA: ENST00000569406.5

CLK3-226, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 3,591 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-226ENST00000569406 LMAN2Q12907 356 aa10.1□□□□□ -0.79
CLK3-226ENST00000569406 KIAA0141Q14154 515 aaPredicted RBP10.1□□□□□ -0.79
CLK3-226ENST00000569406 INPP5JQ15735 1006 aaPredicted RBP10.1□□□□□ -0.79
CLK3-226ENST00000569406 MRNIPQ6NTE8 343 aa10.1□□□□□ -0.79
CLK3-226ENST00000569406 FIGNL1Q6PIW4 674 aa10.1□□□□□ -0.79
CLK3-226ENST00000569406 NUP54Q7Z3B4 507 aa10.1□□□□□ -0.79
CLK3-226ENST00000569406 TMEM150AQ86TG1 271 aa10.1□□□□□ -0.79
CLK3-226ENST00000569406 PYURFQ96I23 114 aa10.1□□□□□ -0.79
CLK3-226ENST00000569406 CCDC115Q96NT0 180 aa10.1□□□□□ -0.79
CLK3-226ENST00000569406 CHST5Q9GZS9 411 aa10.1□□□□□ -0.79
CLK3-226ENST00000569406 SERHLQ9NQF3 203 aa10.1□□□□□ -0.79
CLK3-226ENST00000569406 PARPBPQ9NWS1 579 aa10.1□□□□□ -0.79
CLK3-226ENST00000569406 RPS6KB2Q9UBS0 482 aa10.1□□□□□ -0.79
CLK3-226ENST00000569406 ZNF593O00488 134 aaPredicted RBP10.09□□□□□ -0.79
CLK3-226ENST00000569406 NRG2O14511 850 aaPredicted RBP10.09□□□□□ -0.79
CLK3-226ENST00000569406 LGI1O95970 557 aa10.09□□□□□ -0.79
CLK3-226ENST00000569406 ERCC1P07992 297 aaPredicted RBP10.09□□□□□ -0.79
CLK3-226ENST00000569406 TACR2P21452 398 aa10.09□□□□□ -0.79
CLK3-226ENST00000569406 CERS1P27544 350 aa10.09□□□□□ -0.79
CLK3-226ENST00000569406 BTCP35070 178 aa10.09□□□□□ -0.79
CLK3-226ENST00000569406 THBS2P35442 1172 aa10.09□□□□□ -0.79
CLK3-226ENST00000569406 DGKEP52429 567 aa10.09□□□□□ -0.79
CLK3-226ENST00000569406 SRSF3P84103 164 aaKnown RBP10.09□□□□□ -0.79
CLK3-226ENST00000569406 SLC5A12Q1EHB4 618 aa10.09□□□□□ -0.79
CLK3-226ENST00000569406 SFRP4Q6FHJ7 346 aaPredicted RBP10.09□□□□□ -0.79
CLK3-226ENST00000569406 CDC73Q6P1J9 531 aa10.09□□□□□ -0.79
CLK3-226ENST00000569406 LANCL3Q6ZV70 420 aa10.09□□□□□ -0.79
CLK3-226ENST00000569406 C15orf54Q8N8G6 183 aa10.09□□□□□ -0.79
CLK3-226ENST00000569406 SLC25A36Q96CQ1 311 aa10.09□□□□□ -0.79
CLK3-226ENST00000569406 CNTNAP3BQ96NU0 1288 aa10.09□□□□□ -0.79
CLK3-226ENST00000569406 NDUFAF3Q9BU61 184 aa10.09□□□□□ -0.79
CLK3-226ENST00000569406 MFFQ9GZY8 342 aa10.09□□□□□ -0.79
CLK3-226ENST00000569406 CACYBPQ9HB71 228 aaKnown RBP10.09□□□□□ -0.79
CLK3-226ENST00000569406 BPIFA1Q9NP55 256 aa10.09□□□□□ -0.79
CLK3-226ENST00000569406 TRANK1O15050 2925 aa10.09□□□□□ -0.79
CLK3-226ENST00000569406 FAM86C2PA6NEL3 165 aa10.09□□□□□ -0.79
CLK3-226ENST00000569406 NPIPB9F8W1W9 429 aa10.09□□□□□ -0.79
CLK3-226ENST00000569406 TLR5O60602 858 aa10.09□□□□□ -0.79
CLK3-226ENST00000569406 CYB5R3P00387 301 aaPredicted RBP10.09□□□□□ -0.79
CLK3-226ENST00000569406 PNPP00491 289 aa10.09□□□□□ -0.79
CLK3-226ENST00000569406 CLTBP09497 229 aa10.09□□□□□ -0.79
CLK3-226ENST00000569406 GAAP10253 952 aa10.09□□□□□ -0.79
CLK3-226ENST00000569406 GABRR2P28476 465 aa10.09□□□□□ -0.79
CLK3-226ENST00000569406 PPP2R1BP30154 601 aa10.09□□□□□ -0.79
CLK3-226ENST00000569406 FEN1P39748 380 aaKnown RBP10.09□□□□□ -0.79
CLK3-226ENST00000569406 RPS24P62847 133 aaKnown RBP10.09□□□□□ -0.79
CLK3-226ENST00000569406 ARSJQ5FYB0 599 aaPredicted RBP10.09□□□□□ -0.79
CLK3-226ENST00000569406 C10orf120Q5SQS8 335 aa10.09□□□□□ -0.79
CLK3-226ENST00000569406 SERPINA13PQ6UXR4 307 aa10.09□□□□□ -0.79
CLK3-226ENST00000569406 ZFAND4Q86XD8 727 aa10.09□□□□□ -0.79
CLK3-226ENST00000569406 TMEM163Q8TC26 289 aa10.09□□□□□ -0.79
CLK3-226ENST00000569406 OIT3Q8WWZ8 545 aa10.09□□□□□ -0.79
CLK3-226ENST00000569406 HHIPL1Q96JK4 782 aa10.09□□□□□ -0.79
CLK3-226ENST00000569406 ZNF514Q96K75 400 aaPredicted RBP10.09□□□□□ -0.79
CLK3-226ENST00000569406 MEPEQ9NQ76 525 aaPredicted RBP10.09□□□□□ -0.79
CLK3-226ENST00000569406 ASB1Q9Y576 335 aa10.09□□□□□ -0.79
CLK3-226ENST00000569406 PTPRSQ13332 1948 aa10.09□□□□□ -0.79
CLK3-226ENST00000569406 PLXNB3Q9ULL4 1909 aa10.09□□□□□ -0.79
CLK3-226ENST00000569406 GSAPA4D1B5 854 aa10.09□□□□□ -0.79
CLK3-226ENST00000569406 ITGB1BP1O14713 200 aa10.09□□□□□ -0.79
CLK3-226ENST00000569406 PRKYO43930 277 aa10.09□□□□□ -0.79
CLK3-226ENST00000569406 RAMP2O60895 175 aa10.09□□□□□ -0.79
CLK3-226ENST00000569406 MYOGP15173 224 aa10.09□□□□□ -0.79
CLK3-226ENST00000569406 RCC1P18754 421 aaPredicted RBP10.09□□□□□ -0.79
CLK3-226ENST00000569406 GGT2P36268 569 aa10.09□□□□□ -0.79
CLK3-226ENST00000569406 RPIAP49247 311 aa10.09□□□□□ -0.79
CLK3-226ENST00000569406 EPHA4P54764 986 aa10.09□□□□□ -0.79
CLK3-226ENST00000569406 F2RL1P55085 397 aa10.09□□□□□ -0.79
CLK3-226ENST00000569406 CLDN8P56748 225 aa10.09□□□□□ -0.79
CLK3-226ENST00000569406 ZNF630Q2M218 657 aaPredicted RBP10.09□□□□□ -0.79
CLK3-226ENST00000569406 ACTBL2Q562R1 376 aa10.09□□□□□ -0.79
CLK3-226ENST00000569406 CXorf57Q6NSI4 855 aaKnown RBP10.09□□□□□ -0.79
CLK3-226ENST00000569406 UQCC3Q6UW78 93 aa10.09□□□□□ -0.79
CLK3-226ENST00000569406 TRAPPC5Q8IUR0 188 aa10.09□□□□□ -0.79
CLK3-226ENST00000569406 DDA1Q9BW61 102 aa10.09□□□□□ -0.79
CLK3-226ENST00000569406 SNHG12Q9BXW3 62 aa10.09□□□□□ -0.79
CLK3-226ENST00000569406 OR10A4Q9H209 315 aa10.09□□□□□ -0.79
CLK3-226ENST00000569406 IMP3Q9NV31 184 aaKnown RBP10.09□□□□□ -0.79
CLK3-226ENST00000569406 GPR34Q9UPC5 381 aa10.09□□□□□ -0.79
CLK3-226ENST00000569406 LTBP2Q14767 1821 aa10.08□□□□□ -0.8
CLK3-226ENST00000569406 SLC38A8A6NNN8 435 aa10.08□□□□□ -0.8
CLK3-226ENST00000569406 NPIPA7E9PJI5 369 aa10.08□□□□□ -0.8
CLK3-226ENST00000569406 SMAD6O43541 496 aaKnown RBP10.08□□□□□ -0.8
CLK3-226ENST00000569406 SCELO95171 688 aa10.08□□□□□ -0.8
CLK3-226ENST00000569406 PRAMEF12O95522 483 aa10.08□□□□□ -0.8
CLK3-226ENST00000569406 F10P00742 488 aa10.08□□□□□ -0.8
CLK3-226ENST00000569406 MT-ND4LP03901 98 aa10.08□□□□□ -0.8
CLK3-226ENST00000569406 NPIPA8P0DM63 369 aa10.08□□□□□ -0.8
CLK3-226ENST00000569406 SKP1P63208 163 aa10.08□□□□□ -0.8
CLK3-226ENST00000569406 DYRK1AQ13627 763 aa10.08□□□□□ -0.8
CLK3-226ENST00000569406 C1DQ13901 141 aaKnown RBP10.08□□□□□ -0.8
CLK3-226ENST00000569406 C14orf28Q4W4Y0 310 aa10.08□□□□□ -0.8
CLK3-226ENST00000569406 SLC8B1Q6J4K2 584 aa10.08□□□□□ -0.8
CLK3-226ENST00000569406 METAP1DQ6UB28 335 aaPredicted RBP10.08□□□□□ -0.8
CLK3-226ENST00000569406 MEX3BQ6ZN04 569 aaKnown RBP10.08□□□□□ -0.8
CLK3-226ENST00000569406 PIANPQ8IYJ0 282 aa10.08□□□□□ -0.8
CLK3-226ENST00000569406 OR51S1Q8NGJ8 323 aa10.08□□□□□ -0.8
CLK3-226ENST00000569406 OR4A15Q8NGL6 344 aa10.08□□□□□ -0.8
CLK3-226ENST00000569406 OSTF1Q92882 214 aa10.08□□□□□ -0.8
CLK3-226ENST00000569406 PITX2Q99697 317 aa10.08□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 54.5 ms