RNA–Protein interactions for RNA: ENST00000568784.6

VPS35-210, Transcript of VPS35, retromer complex component, humanhuman

TSL 1 (best)

Gene VPS35, Length 4,017 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-210ENST00000568784 GAS1P54826 345 aa13.45□□□□□ -0.26
VPS35-210ENST00000568784 ST3GAL2Q16842 350 aa13.45□□□□□ -0.26
VPS35-210ENST00000568784 METRNLQ641Q3 311 aa13.45□□□□□ -0.26
VPS35-210ENST00000568784 ZNF687Q8N1G0 1237 aa13.45□□□□□ -0.26
VPS35-210ENST00000568784 ARIH2OSQ8N7S6 290 aa13.45□□□□□ -0.26
VPS35-210ENST00000568784 LRRC3BQ96PB8 259 aa13.45□□□□□ -0.26
VPS35-210ENST00000568784 APOBEC3BQ9UH17 382 aaKnown RBP13.45□□□□□ -0.26
VPS35-210ENST00000568784 TP53BP1Q12888 1972 aaPredicted RBP13.45□□□□□ -0.26
VPS35-210ENST00000568784 OR10H2O60403 315 aa13.45□□□□□ -0.26
VPS35-210ENST00000568784 KDM4BO94953 1096 aa13.45□□□□□ -0.26
VPS35-210ENST00000568784 AK4P27144 223 aaPredicted RBP13.45□□□□□ -0.26
VPS35-210ENST00000568784 BTN1A1Q13410 526 aa13.45□□□□□ -0.26
VPS35-210ENST00000568784 HSD17B12Q53GQ0 312 aa13.45□□□□□ -0.26
VPS35-210ENST00000568784 CD300LDQ6UXZ3 194 aa13.45□□□□□ -0.26
VPS35-210ENST00000568784 GATSQ8NAP1 163 aa13.45□□□□□ -0.26
VPS35-210ENST00000568784 MS4A3Q96HJ5 214 aa13.45□□□□□ -0.26
VPS35-210ENST00000568784 DHRS9Q9BPW9 319 aa13.45□□□□□ -0.26
VPS35-210ENST00000568784 WNT1P04628 370 aa13.44□□□□□ -0.26
VPS35-210ENST00000568784 F3P13726 295 aa13.44□□□□□ -0.26
VPS35-210ENST00000568784 ATF1P18846 271 aa13.44□□□□□ -0.26
VPS35-210ENST00000568784 PITPNAQ00169 270 aa13.44□□□□□ -0.26
VPS35-210ENST00000568784 GRK1Q15835 563 aa13.44□□□□□ -0.26
VPS35-210ENST00000568784 DECR1Q16698 335 aa13.44□□□□□ -0.26
VPS35-210ENST00000568784 ALKAL2Q6UX46 152 aa13.44□□□□□ -0.26
VPS35-210ENST00000568784 SLAIN1Q8ND83 568 aa13.44□□□□□ -0.26
VPS35-210ENST00000568784 HSPA12BQ96MM6 686 aa13.44□□□□□ -0.26
VPS35-210ENST00000568784 NFKBIL1Q9UBC1 381 aaPredicted RBP13.44□□□□□ -0.26
VPS35-210ENST00000568784 SIX6O95475 246 aa13.44□□□□□ -0.26
VPS35-210ENST00000568784 ADH7P40394 386 aa13.44□□□□□ -0.26
VPS35-210ENST00000568784 MAZP56270 477 aaKnown RBP13.44□□□□□ -0.26
VPS35-210ENST00000568784 PSMA6P60900 246 aaKnown RBP13.44□□□□□ -0.26
VPS35-210ENST00000568784 UBE2MP61081 183 aaKnown RBP13.44□□□□□ -0.26
VPS35-210ENST00000568784 ZNF77Q15935 545 aa13.44□□□□□ -0.26
VPS35-210ENST00000568784 MAPK14Q16539 360 aa13.44□□□□□ -0.26
VPS35-210ENST00000568784 FCRLAQ7L513 359 aa13.44□□□□□ -0.26
VPS35-210ENST00000568784 PARGQ86W56 976 aa13.44□□□□□ -0.26
VPS35-210ENST00000568784 CRIPAKQ8N1N5 446 aa13.44□□□□□ -0.26
VPS35-210ENST00000568784 CERS4Q9HA82 394 aa13.44□□□□□ -0.26
VPS35-210ENST00000568784 KCNN3Q9UGI6 736 aa13.44□□□□□ -0.26
VPS35-210ENST00000568784 UNC80Q8N2C7 3258 aa13.44□□□□□ -0.26
VPS35-210ENST00000568784 HPXP02790 462 aa13.44□□□□□ -0.26
VPS35-210ENST00000568784 ENPP1P22413 925 aa13.44□□□□□ -0.26
VPS35-210ENST00000568784 DDX6P26196 483 aaKnown RBP eCLIP13.44□□□□□ -0.265e-8■■■■□ 23.4
VPS35-210ENST00000568784 ARHGAP19Q14CB8 494 aa13.44□□□□□ -0.26
VPS35-210ENST00000568784 NDUFAF6Q330K2 333 aa13.44□□□□□ -0.26
VPS35-210ENST00000568784 TMEM35AQ53FP2 167 aa13.44□□□□□ -0.26
VPS35-210ENST00000568784 OTPQ5XKR4 325 aa13.44□□□□□ -0.26
VPS35-210ENST00000568784 RFLNBQ8N5W9 214 aa13.44□□□□□ -0.26
VPS35-210ENST00000568784 ISYNA1Q9NPH2 558 aa13.44□□□□□ -0.26
VPS35-210ENST00000568784 WASH6PQ9NQA3 447 aa13.44□□□□□ -0.26
VPS35-210ENST00000568784 DOCK9Q9BZ29 2069 aa13.44□□□□□ -0.26
VPS35-210ENST00000568784 A0A1W2PPV9 198 aa13.43□□□□□ -0.26
VPS35-210ENST00000568784 GPR171O14626 319 aa13.43□□□□□ -0.26
VPS35-210ENST00000568784 ARPC5O15511 151 aa13.43□□□□□ -0.26
VPS35-210ENST00000568784 SPINT1O43278 529 aa13.43□□□□□ -0.26
VPS35-210ENST00000568784 ARL6IP5O75915 188 aa13.43□□□□□ -0.26
VPS35-210ENST00000568784 UCHL1P09936 223 aa13.43□□□□□ -0.26
VPS35-210ENST00000568784 SBK2P0C263 348 aa13.43□□□□□ -0.26
VPS35-210ENST00000568784 FBXO45P0C2W1 286 aa13.43□□□□□ -0.26
VPS35-210ENST00000568784 POLR2CP19387 275 aaPredicted RBP13.43□□□□□ -0.26
VPS35-210ENST00000568784 NPR2P20594 1047 aa13.43□□□□□ -0.26
VPS35-210ENST00000568784 C2orf27AQ580R0 203 aa13.43□□□□□ -0.26
VPS35-210ENST00000568784 APOOLQ6UXV4 268 aa13.43□□□□□ -0.26
VPS35-210ENST00000568784 SLITRK4Q8IW52 837 aa13.43□□□□□ -0.26
VPS35-210ENST00000568784 GPALPP1Q8IXQ4 340 aa13.43□□□□□ -0.26
VPS35-210ENST00000568784 IL17RCQ8NAC3 791 aa13.43□□□□□ -0.26
VPS35-210ENST00000568784 SEMA4CQ9C0C4 833 aa13.43□□□□□ -0.26
VPS35-210ENST00000568784 SRMSQ9H3Y6 488 aa13.43□□□□□ -0.26
VPS35-210ENST00000568784 STARD5Q9NSY2 213 aa13.43□□□□□ -0.26
VPS35-210ENST00000568784 TAS2R10Q9NYW0 307 aa13.43□□□□□ -0.26
VPS35-210ENST00000568784 IGKV1-8A0A0C4DH67 115 aa13.43□□□□□ -0.26
VPS35-210ENST00000568784 BTG1P62324 171 aa13.43□□□□□ -0.26
VPS35-210ENST00000568784 EIPR1Q53HC9 387 aa13.43□□□□□ -0.26
VPS35-210ENST00000568784 WFIKKN2Q8TEU8 576 aa13.43□□□□□ -0.26
VPS35-210ENST00000568784 ZC3HAV1LQ96H79 300 aaKnown RBP13.43□□□□□ -0.26
VPS35-210ENST00000568784 OR2M2Q96R28 347 aa13.43□□□□□ -0.26
VPS35-210ENST00000568784 SYNPO2LQ9H987 977 aa13.43□□□□□ -0.26
VPS35-210ENST00000568784 CA5BQ9Y2D0 317 aa13.43□□□□□ -0.26
VPS35-210ENST00000568784 IER3IP1Q9Y5U9 82 aa13.43□□□□□ -0.26
VPS35-210ENST00000568784 BLOC1S5-TXNDC5H3BN57 136 aa13.43□□□□□ -0.26
VPS35-210ENST00000568784 SYT5O00445 386 aa13.43□□□□□ -0.26
VPS35-210ENST00000568784 RAD1O60671 282 aa13.43□□□□□ -0.26
VPS35-210ENST00000568784 ACTR1BP42025 376 aa13.43□□□□□ -0.26
VPS35-210ENST00000568784 ACTR1AP61163 376 aa13.43□□□□□ -0.26
VPS35-210ENST00000568784 MLF2Q15773 248 aaPredicted RBP13.43□□□□□ -0.26
VPS35-210ENST00000568784 PLA1AQ53H76 456 aa13.43□□□□□ -0.26
VPS35-210ENST00000568784 RNLSQ5VYX0 342 aa13.43□□□□□ -0.26
VPS35-210ENST00000568784 MFSD12Q6NUT3 480 aa13.43□□□□□ -0.26
VPS35-210ENST00000568784 RTL4Q6ZR62 310 aa13.43□□□□□ -0.26
VPS35-210ENST00000568784 SSX6Q7RTT6 188 aa13.43□□□□□ -0.26
VPS35-210ENST00000568784 OR2L3Q8NG85 312 aa13.43□□□□□ -0.26
VPS35-210ENST00000568784 PEX11GQ96HA9 241 aa13.43□□□□□ -0.26
VPS35-210ENST00000568784 LMAN2LQ9H0V9 348 aa13.43□□□□□ -0.26
VPS35-210ENST00000568784 PRDM7Q9NQW5 492 aa13.43□□□□□ -0.26
VPS35-210ENST00000568784 KLK11Q9UBX7 282 aa13.43□□□□□ -0.26
VPS35-210ENST00000568784 SESN1Q9Y6P5 492 aa13.43□□□□□ -0.26
VPS35-210ENST00000568784 OTOL1A6NHN0 477 aaPredicted RBP13.42□□□□□ -0.26
VPS35-210ENST00000568784 B8ZZF3 427 aa13.42□□□□□ -0.26
VPS35-210ENST00000568784 H0YC42 278 aa13.42□□□□□ -0.26
VPS35-210ENST00000568784 ZNF593O00488 134 aaPredicted RBP13.42□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 33.2 ms