RNA–Protein interactions for RNA: ENST00000568076.6

CLN3-230, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,968 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-230ENST00000568076 SDC2P34741 201 aa18.65■□□□□ 0.58
CLN3-230ENST00000568076 CRYZQ08257 329 aaKnown RBP18.65■□□□□ 0.58
CLN3-230ENST00000568076 CPEB4Q17RY0 729 aaKnown RBP eCLIP18.65■□□□□ 0.58
CLN3-230ENST00000568076 PRAMEF17Q5VTA0 474 aa18.65■□□□□ 0.58
CLN3-230ENST00000568076 VASNQ6EMK4 673 aa18.65■□□□□ 0.58
CLN3-230ENST00000568076 ULK3Q6PHR2 472 aa18.65■□□□□ 0.58
CLN3-230ENST00000568076 ZNF322Q6U7Q0 402 aaPredicted RBP18.65■□□□□ 0.58
CLN3-230ENST00000568076 GATAD2AQ86YP4 633 aa18.65■□□□□ 0.58
CLN3-230ENST00000568076 SPEM1Q8N4L4 309 aa18.65■□□□□ 0.58
CLN3-230ENST00000568076 TMEM99Q8N816 258 aa18.65■□□□□ 0.58
CLN3-230ENST00000568076 HLA-CQ95604 372 aa18.65■□□□□ 0.58
CLN3-230ENST00000568076 SENP5Q96HI0 755 aaPredicted RBP18.65■□□□□ 0.58
CLN3-230ENST00000568076 KCTD7Q96MP8 289 aa18.65■□□□□ 0.58
CLN3-230ENST00000568076 ISG20L2Q9H9L3 353 aaKnown RBP18.65■□□□□ 0.58
CLN3-230ENST00000568076 WNT16Q9UBV4 365 aa18.65■□□□□ 0.58
CLN3-230ENST00000568076 PLEKHB1Q9UF11 243 aaPredicted RBP18.65■□□□□ 0.58
CLN3-230ENST00000568076 IQCMA0A1B0GVH7 501 aa18.64■□□□□ 0.58
CLN3-230ENST00000568076 C12orf71A8MTZ7 269 aa18.64■□□□□ 0.58
CLN3-230ENST00000568076 TMEM150CB9EJG8 249 aa18.64■□□□□ 0.58
CLN3-230ENST00000568076 RGS5O15539 181 aa18.64■□□□□ 0.58
CLN3-230ENST00000568076 OR2B3O76000 313 aa18.64■□□□□ 0.58
CLN3-230ENST00000568076 CSTAP01040 98 aa18.64■□□□□ 0.58
CLN3-230ENST00000568076 PSMD4P55036 377 aaKnown RBP18.64■□□□□ 0.58
CLN3-230ENST00000568076 HNRNPA0Q13151 305 aaKnown RBP18.64■□□□□ 0.58
CLN3-230ENST00000568076 KLHL12Q53G59 568 aa18.64■□□□□ 0.58
CLN3-230ENST00000568076 LAX1Q8IWV1 398 aa18.64■□□□□ 0.58
CLN3-230ENST00000568076 CMIPQ8IY22 773 aa18.64■□□□□ 0.58
CLN3-230ENST00000568076 ARIH2OSQ8N7S6 290 aa18.64■□□□□ 0.58
CLN3-230ENST00000568076 EFHD2Q96C19 240 aaPredicted RBP18.64■□□□□ 0.58
CLN3-230ENST00000568076 CEP19Q96LK0 163 aa18.64■□□□□ 0.58
CLN3-230ENST00000568076 PRR23D1E9PI22 279 aaPredicted RBP18.64■□□□□ 0.57
CLN3-230ENST00000568076 PRR23D2P0DMB1 279 aaPredicted RBP18.64■□□□□ 0.57
CLN3-230ENST00000568076 CELP19835 753 aa18.64■□□□□ 0.57
CLN3-230ENST00000568076 PAICSP22234 425 aaKnown RBP18.64■□□□□ 0.57
CLN3-230ENST00000568076 FGF9P31371 208 aaPredicted RBP18.64■□□□□ 0.57
CLN3-230ENST00000568076 PSPHP78330 225 aa18.64■□□□□ 0.57
CLN3-230ENST00000568076 TBC1D25Q3MII6 688 aa18.64■□□□□ 0.57
CLN3-230ENST00000568076 POC5Q8NA72 575 aa18.64■□□□□ 0.57
CLN3-230ENST00000568076 TSLPQ969D9 159 aa18.64■□□□□ 0.57
CLN3-230ENST00000568076 AHCYL2Q96HN2 611 aaKnown RBP18.64■□□□□ 0.57
CLN3-230ENST00000568076 MED18Q9BUE0 208 aa18.64■□□□□ 0.57
CLN3-230ENST00000568076 PNO1Q9NRX1 252 aaKnown RBP18.64■□□□□ 0.57
CLN3-230ENST00000568076 DHCR7Q9UBM7 475 aaKnown RBP18.64■□□□□ 0.57
CLN3-230ENST00000568076 PRODH2Q9UF12 536 aa18.64■□□□□ 0.57
CLN3-230ENST00000568076 FBXL4Q9UKA2 621 aa18.64■□□□□ 0.57
CLN3-230ENST00000568076 SLC35A3Q9Y2D2 325 aa18.64■□□□□ 0.57
CLN3-230ENST00000568076 CEP192Q8TEP8 1941 aa18.63■□□□□ 0.57
CLN3-230ENST00000568076 EFCAB7A8K855 629 aa18.63■□□□□ 0.57
CLN3-230ENST00000568076 LOC110117498-PIK3R3F6TDL0 507 aa18.63■□□□□ 0.57
CLN3-230ENST00000568076 AKAP8O43823 692 aaKnown RBP18.63■□□□□ 0.57
CLN3-230ENST00000568076 REM1O75628 298 aa18.63■□□□□ 0.57
CLN3-230ENST00000568076 CLUP10909 449 aa18.63■□□□□ 0.57
CLN3-230ENST00000568076 MYF5P13349 255 aa18.63■□□□□ 0.57
CLN3-230ENST00000568076 ALAS2P22557 587 aa18.63■□□□□ 0.57
CLN3-230ENST00000568076 EFNA3P52797 238 aa18.63■□□□□ 0.57
CLN3-230ENST00000568076 SLC37A1P57057 533 aa18.63■□□□□ 0.57
CLN3-230ENST00000568076 CRMP1Q14194 572 aa18.63■□□□□ 0.57
CLN3-230ENST00000568076 ZSWIM7Q19AV6 140 aa18.63■□□□□ 0.57
CLN3-230ENST00000568076 KLHL26Q53HC5 615 aa18.63■□□□□ 0.57
CLN3-230ENST00000568076 RTL4Q6ZR62 310 aa18.63■□□□□ 0.57
CLN3-230ENST00000568076 KLBQ86Z14 1044 aa18.63■□□□□ 0.57
CLN3-230ENST00000568076 CADM3Q8N126 398 aa18.63■□□□□ 0.57
CLN3-230ENST00000568076 SLC25A45Q8N413 288 aa18.63■□□□□ 0.57
CLN3-230ENST00000568076 ACBD7Q8N6N7 88 aa18.63■□□□□ 0.57
CLN3-230ENST00000568076 CYB561A3Q8NBI2 242 aa18.63■□□□□ 0.57
CLN3-230ENST00000568076 CLIP3Q96DZ5 547 aa18.63■□□□□ 0.57
CLN3-230ENST00000568076 SHDQ96IW2 340 aa18.63■□□□□ 0.57
CLN3-230ENST00000568076 TBX5Q99593 518 aa18.63■□□□□ 0.57
CLN3-230ENST00000568076 TEAD3Q99594 435 aa18.63■□□□□ 0.57
CLN3-230ENST00000568076 PELOQ9BRX2 385 aaKnown RBP18.63■□□□□ 0.57
CLN3-230ENST00000568076 KATNB1Q9BVA0 655 aa18.63■□□□□ 0.57
CLN3-230ENST00000568076 TMED9Q9BVK6 235 aa18.63■□□□□ 0.57
CLN3-230ENST00000568076 YIPF2Q9BWQ6 316 aa18.63■□□□□ 0.57
CLN3-230ENST00000568076 SP140LQ9H930 580 aa18.63■□□□□ 0.57
CLN3-230ENST00000568076 V9GYH0 126 aa18.63■□□□□ 0.57
CLN3-230ENST00000568076 TRDV1A0A1B0GX56 115 aa18.62■□□□□ 0.57
CLN3-230ENST00000568076 SMIM30A4D0T7 59 aa18.62■□□□□ 0.57
CLN3-230ENST00000568076 A8MUA0 341 aa18.62■□□□□ 0.57
CLN3-230ENST00000568076 SNX4O95219 450 aa18.62■□□□□ 0.57
CLN3-230ENST00000568076 SLC2A5P22732 501 aa18.62■□□□□ 0.57
CLN3-230ENST00000568076 HSD11B2P80365 405 aa18.62■□□□□ 0.57
CLN3-230ENST00000568076 RUNX1T1Q06455 604 aa18.62■□□□□ 0.57
CLN3-230ENST00000568076 CDC20Q12834 499 aa18.62■□□□□ 0.57
CLN3-230ENST00000568076 INSL4Q14641 139 aa18.62■□□□□ 0.57
CLN3-230ENST00000568076 AGAP7PQ5VUJ5 663 aa18.62■□□□□ 0.57
CLN3-230ENST00000568076 SLC35F3Q8IY50 421 aa18.62■□□□□ 0.57
CLN3-230ENST00000568076 CAMKK1Q8N5S9 505 aa18.62■□□□□ 0.57
CLN3-230ENST00000568076 OR7G1Q8NGA0 311 aa18.62■□□□□ 0.57
CLN3-230ENST00000568076 OR1L3Q8NH93 324 aa18.62■□□□□ 0.57
CLN3-230ENST00000568076 DNASE2BQ8WZ79 361 aa18.62■□□□□ 0.57
CLN3-230ENST00000568076 WDFY2Q96P53 400 aa18.62■□□□□ 0.57
CLN3-230ENST00000568076 OR51V1Q9H2C8 321 aa18.62■□□□□ 0.57
CLN3-230ENST00000568076 TBC1D17Q9HA65 648 aa18.62■□□□□ 0.57
CLN3-230ENST00000568076 RPS6KB2Q9UBS0 482 aa18.62■□□□□ 0.57
CLN3-230ENST00000568076 ZNF229Q9UJW7 825 aa18.62■□□□□ 0.57
CLN3-230ENST00000568076 GMEB2Q9UKD1 530 aa18.62■□□□□ 0.57
CLN3-230ENST00000568076 LRRN3E7EW58 273 aa18.62■□□□□ 0.57
CLN3-230ENST00000568076 GIMD1P0DJR0 217 aa18.62■□□□□ 0.57
CLN3-230ENST00000568076 CSF2RBP32927 897 aa18.62■□□□□ 0.57
CLN3-230ENST00000568076 SLC9A3P48764 834 aa18.62■□□□□ 0.57
Retrieved 100 of 20,778 RNA–protein pairs in 47.3 ms