RNA–Protein interactions for RNA: ENST00000559119.1

VPS13C-208, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 2

Gene VPS13C, Length 738 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-208ENST00000559119 H0YIG0 161 aa2.44□□□□□ -2.02
VPS13C-208ENST00000559119 NDC80O14777 642 aa2.44□□□□□ -2.02
VPS13C-208ENST00000559119 KMOO15229 486 aa2.44□□□□□ -2.02
VPS13C-208ENST00000559119 MAPK13O15264 365 aa2.44□□□□□ -2.02
VPS13C-208ENST00000559119 DCTN3O75935 186 aa2.44□□□□□ -2.02
VPS13C-208ENST00000559119 TGDSO95455 350 aa2.44□□□□□ -2.02
VPS13C-208ENST00000559119 GSTT2P0CG29 244 aa2.44□□□□□ -2.02
VPS13C-208ENST00000559119 GSTT2BP0CG30 244 aa2.44□□□□□ -2.02
VPS13C-208ENST00000559119 MARCKSP29966 332 aaPredicted RBP2.44□□□□□ -2.02
VPS13C-208ENST00000559119 GTF2H1P32780 548 aa2.44□□□□□ -2.02
VPS13C-208ENST00000559119 TRIM23P36406 574 aa2.44□□□□□ -2.02
VPS13C-208ENST00000559119 PPP1R2P41236 205 aa2.44□□□□□ -2.02
VPS13C-208ENST00000559119 RPL5P46777 297 aaKnown RBP2.44□□□□□ -2.02
VPS13C-208ENST00000559119 TIMM10P62072 90 aa2.44□□□□□ -2.02
VPS13C-208ENST00000559119 ZNF85Q03923 595 aa2.44□□□□□ -2.02
VPS13C-208ENST00000559119 RELAQ04206 551 aa2.44□□□□□ -2.02
VPS13C-208ENST00000559119 RCN2Q14257 317 aa2.44□□□□□ -2.02
VPS13C-208ENST00000559119 GPNMBQ14956 572 aa2.44□□□□□ -2.02
VPS13C-208ENST00000559119 SPA17Q15506 151 aa2.44□□□□□ -2.02
VPS13C-208ENST00000559119 SHROOM1Q2M3G4 852 aaPredicted RBP2.44□□□□□ -2.02
VPS13C-208ENST00000559119 BEND3Q5T5X7 828 aa2.44□□□□□ -2.02
VPS13C-208ENST00000559119 SULT1C3Q6IMI6 304 aa2.44□□□□□ -2.02
VPS13C-208ENST00000559119 LRRC74BQ6ZQY2 392 aa2.44□□□□□ -2.02
VPS13C-208ENST00000559119 RGS9BPQ6ZS82 235 aa2.44□□□□□ -2.02
VPS13C-208ENST00000559119 HSD17B13Q7Z5P4 300 aaPredicted RBP2.44□□□□□ -2.02
VPS13C-208ENST00000559119 NET1Q7Z628 596 aaPredicted RBP2.44□□□□□ -2.02
VPS13C-208ENST00000559119 CSGALNACT2Q8N6G5 542 aa2.44□□□□□ -2.02
VPS13C-208ENST00000559119 C10orf53Q8N6V4 93 aa2.44□□□□□ -2.02
VPS13C-208ENST00000559119 ARL10Q8N8L6 244 aa2.44□□□□□ -2.02
VPS13C-208ENST00000559119 PSMA8Q8TAA3 256 aa2.44□□□□□ -2.02
VPS13C-208ENST00000559119 ACTRT1Q8TDG2 376 aa2.44□□□□□ -2.02
VPS13C-208ENST00000559119 DDI1Q8WTU0 396 aa2.44□□□□□ -2.02
VPS13C-208ENST00000559119 ANKRD49Q8WVL7 239 aa2.44□□□□□ -2.02
VPS13C-208ENST00000559119 STARD8Q92502 1023 aa2.44□□□□□ -2.02
VPS13C-208ENST00000559119 SNF8Q96H20 258 aa2.44□□□□□ -2.02
VPS13C-208ENST00000559119 ANKRD36BP1Q96IX9 119 aa2.44□□□□□ -2.02
VPS13C-208ENST00000559119 CXorf58Q96LI9 332 aa2.44□□□□□ -2.02
VPS13C-208ENST00000559119 BIRC8Q96P09 236 aa2.44□□□□□ -2.02
VPS13C-208ENST00000559119 CHP1Q99653 195 aa2.44□□□□□ -2.02
VPS13C-208ENST00000559119 CCT7Q99832 543 aa2.44□□□□□ -2.02
VPS13C-208ENST00000559119 SIKE1Q9BRV8 207 aa2.44□□□□□ -2.02
VPS13C-208ENST00000559119 MRPL9Q9BYD2 267 aaKnown RBP2.44□□□□□ -2.02
VPS13C-208ENST00000559119 C2orf40Q9H1Z8 148 aa2.44□□□□□ -2.02
VPS13C-208ENST00000559119 GBA3Q9H227 469 aa2.44□□□□□ -2.02
VPS13C-208ENST00000559119 OR51J1Q9H342 316 aa2.44□□□□□ -2.02
VPS13C-208ENST00000559119 TPK1Q9H3S4 243 aa2.44□□□□□ -2.02
VPS13C-208ENST00000559119 ZDHHC6Q9H6R6 413 aa2.44□□□□□ -2.02
VPS13C-208ENST00000559119 NHEJ1Q9H9Q4 299 aaPredicted RBP2.44□□□□□ -2.02
VPS13C-208ENST00000559119 PARVGQ9HBI0 331 aa2.44□□□□□ -2.02
VPS13C-208ENST00000559119 PLGRKTQ9HBL7 147 aa2.44□□□□□ -2.02
VPS13C-208ENST00000559119 IL1RAPL2Q9NP60 686 aa2.44□□□□□ -2.02
VPS13C-208ENST00000559119 ETNK2Q9NVF9 386 aa2.44□□□□□ -2.02
VPS13C-208ENST00000559119 RHBDL2Q9NX52 303 aa2.44□□□□□ -2.02
VPS13C-208ENST00000559119 EURLQ9NYK6 297 aa2.44□□□□□ -2.02
VPS13C-208ENST00000559119 TRIM10Q9UDY6 481 aa2.44□□□□□ -2.02
VPS13C-208ENST00000559119 ANGPTL2Q9UKU9 493 aa2.44□□□□□ -2.02
VPS13C-208ENST00000559119 RABL2BQ9UNT1 228 aa2.44□□□□□ -2.02
VPS13C-208ENST00000559119 EXOC7Q9UPT5 735 aa2.44□□□□□ -2.02
VPS13C-208ENST00000559119 ITM2BQ9Y287 266 aa2.44□□□□□ -2.02
VPS13C-208ENST00000559119 STK38LQ9Y2H1 464 aa2.44□□□□□ -2.02
VPS13C-208ENST00000559119 PPIAL4AQ9Y536 164 aa2.44□□□□□ -2.02
VPS13C-208ENST00000559119 TIMM22Q9Y584 194 aa2.44□□□□□ -2.02
VPS13C-208ENST00000559119 N6AMT1Q9Y5N5 214 aa2.44□□□□□ -2.02
VPS13C-208ENST00000559119 C1orf167Q5SNV9 1468 aa2.44□□□□□ -2.02
VPS13C-208ENST00000559119 MED1Q15648 1581 aaPredicted RBP2.44□□□□□ -2.02
VPS13C-208ENST00000559119 ABCB11O95342 1321 aa2.43□□□□□ -2.02
VPS13C-208ENST00000559119 CAMSAP1Q5T5Y3 1602 aa2.43□□□□□ -2.02
VPS13C-208ENST00000559119 XRN1Q8IZH2 1706 aaKnown RBP2.43□□□□□ -2.02
VPS13C-208ENST00000559119 IGLV4-60A0A075B6I1 120 aa2.43□□□□□ -2.02
VPS13C-208ENST00000559119 A0A0D9SFI3 127 aa2.43□□□□□ -2.02
VPS13C-208ENST00000559119 BICDL2A1A5D9 508 aa2.43□□□□□ -2.02
VPS13C-208ENST00000559119 TRIM64A6NGJ6 449 aa2.43□□□□□ -2.02
VPS13C-208ENST00000559119 TRIM64BA6NI03 449 aa2.43□□□□□ -2.02
VPS13C-208ENST00000559119 TMEM114B3SHH9 223 aa2.43□□□□□ -2.02
VPS13C-208ENST00000559119 C11orf98E9PRG8 122 aa2.43□□□□□ -2.02
VPS13C-208ENST00000559119 SLC30A4O14863 429 aa2.43□□□□□ -2.02
VPS13C-208ENST00000559119 SLC22A1O15245 554 aa2.43□□□□□ -2.02
VPS13C-208ENST00000559119 ALOX15BO15296 676 aa2.43□□□□□ -2.02
VPS13C-208ENST00000559119 RGS16O15492 202 aaPredicted RBP2.43□□□□□ -2.02
VPS13C-208ENST00000559119 RAD51CO43502 376 aa2.43□□□□□ -2.02
VPS13C-208ENST00000559119 CCDC22O60826 627 aa2.43□□□□□ -2.02
VPS13C-208ENST00000559119 FKBP6O75344 327 aa2.43□□□□□ -2.02
VPS13C-208ENST00000559119 PSMG1O95456 288 aa2.43□□□□□ -2.02
VPS13C-208ENST00000559119 HOXB7P09629 217 aa2.43□□□□□ -2.02
VPS13C-208ENST00000559119 ZNF823P16415 610 aa2.43□□□□□ -2.02
VPS13C-208ENST00000559119 M6PRP20645 277 aa2.43□□□□□ -2.02
VPS13C-208ENST00000559119 S100A5P33763 92 aa2.43□□□□□ -2.02
VPS13C-208ENST00000559119 MAGEB1P43366 347 aa2.43□□□□□ -2.02
VPS13C-208ENST00000559119 ACADSBP45954 432 aa2.43□□□□□ -2.02
VPS13C-208ENST00000559119 TMED10P49755 219 aaKnown RBP2.43□□□□□ -2.02
VPS13C-208ENST00000559119 BCAP31P51572 246 aa2.43□□□□□ -2.02
VPS13C-208ENST00000559119 RAP1GDS1P52306 607 aa2.43□□□□□ -2.02
VPS13C-208ENST00000559119 SLC18A1P54219 525 aa2.43□□□□□ -2.02
VPS13C-208ENST00000559119 NUP107P57740 925 aa2.43□□□□□ -2.02
VPS13C-208ENST00000559119 ATP6V0D1P61421 351 aa2.43□□□□□ -2.02
VPS13C-208ENST00000559119 UBXN1Q04323 297 aa2.43□□□□□ -2.02
VPS13C-208ENST00000559119 ASPHQ12797 758 aa2.43□□□□□ -2.02
VPS13C-208ENST00000559119 KLF5Q13887 457 aaPredicted RBP2.43□□□□□ -2.02
VPS13C-208ENST00000559119 NFE2L1Q14494 772 aa2.43□□□□□ -2.02
VPS13C-208ENST00000559119 MORF4L2Q15014 288 aa2.43□□□□□ -2.02
Retrieved 100 of 20,778 RNA–protein pairs in 45.4 ms