RNA–Protein interactions for RNA: ENST00000557342.5

SLIRP-209, Transcript of SRA stem-loop interacting RNA binding protein, humanhuman

TSL 1 (best) BASIC

Gene SLIRP, Length 408 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SLIRP-209ENST00000557342 ACER3Q9NUN7 267 aa11.23□□□□□ -0.61
SLIRP-209ENST00000557342 FOXD3Q9UJU5 478 aaPredicted RBP11.23□□□□□ -0.61
SLIRP-209ENST00000557342 MCTS1Q9ULC4 181 aaKnown RBP11.23□□□□□ -0.61
SLIRP-209ENST00000557342 A0A0J9YW62 118 aa11.22□□□□□ -0.61
SLIRP-209ENST00000557342 CLDN24A6NM45 220 aa11.22□□□□□ -0.61
SLIRP-209ENST00000557342 FAAHO00519 579 aa11.22□□□□□ -0.61
SLIRP-209ENST00000557342 TNFSF11O14788 317 aa11.22□□□□□ -0.61
SLIRP-209ENST00000557342 CCDC22O60826 627 aa11.22□□□□□ -0.61
SLIRP-209ENST00000557342 PGM3O95394 542 aa11.22□□□□□ -0.61
SLIRP-209ENST00000557342 TGM6O95932 706 aa11.22□□□□□ -0.61
SLIRP-209ENST00000557342 NPPAP01160 153 aa11.22□□□□□ -0.61
SLIRP-209ENST00000557342 NUDT7P0C024 238 aa11.22□□□□□ -0.61
SLIRP-209ENST00000557342 ETS2P15036 469 aa11.22□□□□□ -0.61
SLIRP-209ENST00000557342 SLC6A2P23975 617 aa11.22□□□□□ -0.61
SLIRP-209ENST00000557342 FKBP2P26885 142 aaKnown RBP11.22□□□□□ -0.61
SLIRP-209ENST00000557342 RYKP34925 604 aa11.22□□□□□ -0.61
SLIRP-209ENST00000557342 SFTPDP35247 375 aa11.22□□□□□ -0.61
SLIRP-209ENST00000557342 PEX19P40855 299 aa11.22□□□□□ -0.61
SLIRP-209ENST00000557342 APOBEC1P41238 236 aaKnown RBP11.22□□□□□ -0.61
SLIRP-209ENST00000557342 HTR3AP46098 478 aa11.22□□□□□ -0.61
SLIRP-209ENST00000557342 CDK6Q00534 326 aa11.22□□□□□ -0.61
SLIRP-209ENST00000557342 MERTKQ12866 999 aa11.22□□□□□ -0.61
SLIRP-209ENST00000557342 CYLC2Q14093 348 aaPredicted RBP11.22□□□□□ -0.61
SLIRP-209ENST00000557342 CTU2Q2VPK5 515 aaKnown RBP11.22□□□□□ -0.61
SLIRP-209ENST00000557342 FBXL19-AS1Q494R0 122 aa11.22□□□□□ -0.61
SLIRP-209ENST00000557342 RPS26P11Q5JNZ5 115 aaPredicted RBP11.22□□□□□ -0.61
SLIRP-209ENST00000557342 RNF220Q5VTB9 566 aa11.22□□□□□ -0.61
SLIRP-209ENST00000557342 HBMQ6B0K9 141 aa11.22□□□□□ -0.61
SLIRP-209ENST00000557342 REEP3Q6NUK4 255 aa11.22□□□□□ -0.61
SLIRP-209ENST00000557342 C3orf33Q6P1S2 294 aa11.22□□□□□ -0.61
SLIRP-209ENST00000557342 POMZP3Q6PJE2 187 aa11.22□□□□□ -0.61
SLIRP-209ENST00000557342 PLEKHM3Q6ZWE6 761 aa11.22□□□□□ -0.61
SLIRP-209ENST00000557342 ZNF550Q7Z398 422 aa11.22□□□□□ -0.61
SLIRP-209ENST00000557342 GRINAQ7Z429 371 aa11.22□□□□□ -0.61
SLIRP-209ENST00000557342 RETREG3Q86VR2 466 aa11.22□□□□□ -0.61
SLIRP-209ENST00000557342 VRK2Q86Y07 508 aa11.22□□□□□ -0.61
SLIRP-209ENST00000557342 KRT73Q86Y46 540 aa11.22□□□□□ -0.61
SLIRP-209ENST00000557342 RELL2Q8NC24 303 aaPredicted RBP11.22□□□□□ -0.61
SLIRP-209ENST00000557342 SLC25A43Q8WUT9 341 aaPredicted RBP11.22□□□□□ -0.61
SLIRP-209ENST00000557342 FIG4Q92562 907 aa11.22□□□□□ -0.61
SLIRP-209ENST00000557342 CNOT9Q92600 299 aaKnown RBP11.22□□□□□ -0.61
SLIRP-209ENST00000557342 MAL2Q969L2 176 aa11.22□□□□□ -0.61
SLIRP-209ENST00000557342 CPNE4Q96A23 557 aaPredicted RBP11.22□□□□□ -0.61
SLIRP-209ENST00000557342 MARVELD3Q96A59 401 aa11.22□□□□□ -0.61
SLIRP-209ENST00000557342 INTS12Q96CB8 462 aaKnown RBP11.22□□□□□ -0.61
SLIRP-209ENST00000557342 ZNF845Q96IR2 970 aaPredicted RBP11.22□□□□□ -0.61
SLIRP-209ENST00000557342 ADGRG7Q96K78 797 aa11.22□□□□□ -0.61
SLIRP-209ENST00000557342 SPATA5L1Q9BVQ7 753 aa11.22□□□□□ -0.61
SLIRP-209ENST00000557342 SPATA9Q9BWV2 254 aa11.22□□□□□ -0.61
SLIRP-209ENST00000557342 PIGMQ9H3S5 423 aa11.22□□□□□ -0.61
SLIRP-209ENST00000557342 TMEM185BQ9H7F4 350 aa11.22□□□□□ -0.61
SLIRP-209ENST00000557342 RNF122Q9H9V4 155 aa11.22□□□□□ -0.61
SLIRP-209ENST00000557342 DNAJB12Q9NXW2 375 aaKnown RBP11.22□□□□□ -0.61
SLIRP-209ENST00000557342 ZNF443Q9Y2A4 671 aaPredicted RBP11.22□□□□□ -0.61
SLIRP-209ENST00000557342 SPIN1Q9Y657 262 aaPredicted RBP11.22□□□□□ -0.61
SLIRP-209ENST00000557342 CAPN7Q9Y6W3 813 aa11.22□□□□□ -0.61
SLIRP-209ENST00000557342 CDHR4A6H8M9 788 aa11.21□□□□□ -0.61
SLIRP-209ENST00000557342 CFAP73A6NFT4 308 aa11.21□□□□□ -0.61
SLIRP-209ENST00000557342 SYT5O00445 386 aa11.21□□□□□ -0.61
SLIRP-209ENST00000557342 EFNA2O43921 213 aa11.21□□□□□ -0.61
SLIRP-209ENST00000557342 CXCL13O43927 109 aa11.21□□□□□ -0.61
SLIRP-209ENST00000557342 BCAS1O75363 584 aaPredicted RBP11.21□□□□□ -0.61
SLIRP-209ENST00000557342 OPN1LWP04000 364 aa11.21□□□□□ -0.61
SLIRP-209ENST00000557342 PABPC4LP0CB38 370 aaKnown RBP11.21□□□□□ -0.61
SLIRP-209ENST00000557342 IL11P20809 199 aa11.21□□□□□ -0.61
SLIRP-209ENST00000557342 SLC7A1P30825 629 aa11.21□□□□□ -0.61
SLIRP-209ENST00000557342 IDH2P48735 452 aaKnown RBP11.21□□□□□ -0.61
SLIRP-209ENST00000557342 CARD18P57730 90 aa11.21□□□□□ -0.61
SLIRP-209ENST00000557342 RBBP4Q09028 425 aa11.21□□□□□ -0.61
SLIRP-209ENST00000557342 FOXF2Q12947 444 aa11.21□□□□□ -0.61
SLIRP-209ENST00000557342 SCARB2Q14108 478 aa11.21□□□□□ -0.61
SLIRP-209ENST00000557342 TRMT5Q32P41 509 aaKnown RBP11.21□□□□□ -0.61
SLIRP-209ENST00000557342 TMEM176BQ3YBM2 270 aaPredicted RBP11.21□□□□□ -0.61
SLIRP-209ENST00000557342 ZNF311Q5JNZ3 666 aa11.21□□□□□ -0.61
SLIRP-209ENST00000557342 GTF2IRD2BQ6EKJ0 949 aa11.21□□□□□ -0.61
SLIRP-209ENST00000557342 PPP4R4Q6NUP7 873 aa11.21□□□□□ -0.61
SLIRP-209ENST00000557342 PLXDC2Q6UX71 529 aa11.21□□□□□ -0.61
SLIRP-209ENST00000557342 MEX3BQ6ZN04 569 aaKnown RBP11.21□□□□□ -0.61
SLIRP-209ENST00000557342 ZNF836Q6ZNA1 936 aa11.21□□□□□ -0.61
SLIRP-209ENST00000557342 GTF2IRD2Q86UP8 949 aa11.21□□□□□ -0.61
SLIRP-209ENST00000557342 PCYOX1LQ8NBM8 494 aa11.21□□□□□ -0.61
SLIRP-209ENST00000557342 ACBD4Q8NC06 268 aa11.21□□□□□ -0.61
SLIRP-209ENST00000557342 HIPK4Q8NE63 616 aa11.21□□□□□ -0.61
SLIRP-209ENST00000557342 NFKBIDQ8NI38 313 aa11.21□□□□□ -0.61
SLIRP-209ENST00000557342 FNDC9Q8TBE3 224 aa11.21□□□□□ -0.61
SLIRP-209ENST00000557342 OSTF1Q92882 214 aa11.21□□□□□ -0.61
SLIRP-209ENST00000557342 RNASE6Q93091 150 aaKnown RBP11.21□□□□□ -0.61
SLIRP-209ENST00000557342 REXO5Q96IC2 774 aaKnown RBP11.21□□□□□ -0.61
SLIRP-209ENST00000557342 ZNF607Q96SK3 696 aa11.21□□□□□ -0.61
SLIRP-209ENST00000557342 SH3GL1Q99961 368 aa11.21□□□□□ -0.61
SLIRP-209ENST00000557342 IKZF5Q9H5V7 419 aa11.21□□□□□ -0.61
SLIRP-209ENST00000557342 NPDC1Q9NQX5 325 aaPredicted RBP11.21□□□□□ -0.61
SLIRP-209ENST00000557342 GLRX2Q9NS18 164 aa11.21□□□□□ -0.61
SLIRP-209ENST00000557342 ANGPT4Q9Y264 503 aa11.21□□□□□ -0.61
SLIRP-209ENST00000557342 HECTD1Q9ULT8 2610 aa11.2□□□□□ -0.62
SLIRP-209ENST00000557342 A0A1W2PNV4 684 aa11.2□□□□□ -0.62
SLIRP-209ENST00000557342 EEF1E1-BLOC1S5C9J1V9 151 aa11.2□□□□□ -0.62
SLIRP-209ENST00000557342 FBP2O00757 339 aa11.2□□□□□ -0.62
SLIRP-209ENST00000557342 EEF1E1O43324 174 aaKnown RBP11.2□□□□□ -0.62
SLIRP-209ENST00000557342 IGFBP2P18065 325 aa11.2□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 41.3 ms