RNA–Protein interactions for RNA: ENST00000553403.1

CCDC88C-205, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best) BASIC

Gene CCDC88C, Length 1,651 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-205ENST00000553403 DCTN2Q13561 401 aaKnown RBP24.17■■□□□ 1.46
CCDC88C-205ENST00000553403 MOGQ16653 247 aa24.17■■□□□ 1.46
CCDC88C-205ENST00000553403 NXNL2Q5VZ03 156 aa24.17■■□□□ 1.46
CCDC88C-205ENST00000553403 ZNF441Q8N8Z8 693 aa24.17■■□□□ 1.46
CCDC88C-205ENST00000553403 PCDHGA3Q9Y5H0 932 aa24.17■■□□□ 1.46
CCDC88C-205ENST00000553403 CSO75390 466 aaKnown RBP24.16■■□□□ 1.46
CCDC88C-205ENST00000553403 REM1O75628 298 aa24.16■■□□□ 1.46
CCDC88C-205ENST00000553403 NGFRP08138 427 aa24.16■■□□□ 1.46
CCDC88C-205ENST00000553403 FUT1P19526 365 aa24.16■■□□□ 1.46
CCDC88C-205ENST00000553403 CLK1P49759 484 aaKnown RBP24.16■■□□□ 1.46
CCDC88C-205ENST00000553403 CDH11P55287 796 aa24.16■■□□□ 1.46
CCDC88C-205ENST00000553403 KHDRBS1Q07666 443 aaKnown RBP eCLIP24.16■■□□□ 1.46
CCDC88C-205ENST00000553403 SKP2Q13309 424 aa24.16■■□□□ 1.46
CCDC88C-205ENST00000553403 SPHARQ15513 63 aa24.16■■□□□ 1.46
CCDC88C-205ENST00000553403 ZNF385CQ66K41 422 aaPredicted RBP24.16■■□□□ 1.46
CCDC88C-205ENST00000553403 LANCL3Q6ZV70 420 aa24.16■■□□□ 1.46
CCDC88C-205ENST00000553403 PHOSPHO1Q8TCT1 267 aa24.16■■□□□ 1.46
CCDC88C-205ENST00000553403 DYNC2LI1Q8TCX1 351 aa24.16■■□□□ 1.46
CCDC88C-205ENST00000553403 EXOSC1Q9Y3B2 195 aaKnown RBP24.16■■□□□ 1.46
CCDC88C-205ENST00000553403 FER1L5A0AVI2 2057 aa24.15■■□□□ 1.46
CCDC88C-205ENST00000553403 HTR3EA5X5Y0 456 aa24.15■■□□□ 1.46
CCDC88C-205ENST00000553403 CCRL2O00421 344 aa24.15■■□□□ 1.46
CCDC88C-205ENST00000553403 TSPAN2O60636 221 aa24.15■■□□□ 1.46
CCDC88C-205ENST00000553403 SCG5P05408 212 aa24.15■■□□□ 1.46
CCDC88C-205ENST00000553403 IL12BP29460 328 aa24.15■■□□□ 1.46
CCDC88C-205ENST00000553403 NR0B1P51843 470 aaKnown RBP24.15■■□□□ 1.46
CCDC88C-205ENST00000553403 TRA2AQ13595 282 aaKnown RBP eCLIP24.15■■□□□ 1.46
CCDC88C-205ENST00000553403 CD226Q15762 336 aa24.15■■□□□ 1.46
CCDC88C-205ENST00000553403 TSTQ16762 297 aaKnown RBP24.15■■□□□ 1.46
CCDC88C-205ENST00000553403 DGUOKQ16854 277 aa24.15■■□□□ 1.46
CCDC88C-205ENST00000553403 WBP2NLQ6ICG8 309 aa24.15■■□□□ 1.46
CCDC88C-205ENST00000553403 LINC00299Q6ZSB3 139 aa24.15■■□□□ 1.46
CCDC88C-205ENST00000553403 OVCH1Q7RTY7 1134 aa24.15■■□□□ 1.46
CCDC88C-205ENST00000553403 PPP1R3BQ86XI6 285 aa24.15■■□□□ 1.46
CCDC88C-205ENST00000553403 C3orf49Q96BT1 292 aa24.15■■□□□ 1.46
CCDC88C-205ENST00000553403 OPALINQ96PE5 141 aa24.15■■□□□ 1.46
CCDC88C-205ENST00000553403 ADOQ96SZ5 270 aa24.15■■□□□ 1.46
CCDC88C-205ENST00000553403 TAPBPLQ9BX59 468 aa24.15■■□□□ 1.46
CCDC88C-205ENST00000553403 IL20RAQ9UHF4 553 aa24.15■■□□□ 1.46
CCDC88C-205ENST00000553403 PIEZO1Q92508 2521 aa24.15■■□□□ 1.46
CCDC88C-205ENST00000553403 GTPBP1O00178 669 aaKnown RBP24.15■■□□□ 1.46
CCDC88C-205ENST00000553403 NTN3O00634 580 aaPredicted RBP24.15■■□□□ 1.46
CCDC88C-205ENST00000553403 MYL12BO14950 172 aa24.15■■□□□ 1.46
CCDC88C-205ENST00000553403 ZNF264O43296 627 aa24.15■■□□□ 1.46
CCDC88C-205ENST00000553403 GFRA3O60609 400 aa24.15■■□□□ 1.46
CCDC88C-205ENST00000553403 PPM1BO75688 479 aa24.15■■□□□ 1.46
CCDC88C-205ENST00000553403 HEXBP07686 556 aa24.15■■□□□ 1.46
CCDC88C-205ENST00000553403 MYL12AP19105 171 aa24.15■■□□□ 1.46
CCDC88C-205ENST00000553403 HTR1FP30939 366 aa24.15■■□□□ 1.46
CCDC88C-205ENST00000553403 NBL1P41271 181 aa24.15■■□□□ 1.46
CCDC88C-205ENST00000553403 CRYZQ08257 329 aaKnown RBP24.15■■□□□ 1.46
CCDC88C-205ENST00000553403 C1DQ13901 141 aaKnown RBP24.15■■□□□ 1.46
CCDC88C-205ENST00000553403 ZNF528Q3MIS6 628 aa24.15■■□□□ 1.46
CCDC88C-205ENST00000553403 TIMM50Q3ZCQ8 353 aa24.15■■□□□ 1.46
CCDC88C-205ENST00000553403 ANKRD37Q7Z713 158 aa24.15■■□□□ 1.46
CCDC88C-205ENST00000553403 GID4Q8IVV7 300 aa24.15■■□□□ 1.46
CCDC88C-205ENST00000553403 CACTIN-AS1Q8N1I8 211 aa24.15■■□□□ 1.46
CCDC88C-205ENST00000553403 SLC19A3Q9BZV2 496 aa24.15■■□□□ 1.46
CCDC88C-205ENST00000553403 LAT2Q9GZY6 243 aa24.15■■□□□ 1.46
CCDC88C-205ENST00000553403 PLGRKTQ9HBL7 147 aa24.15■■□□□ 1.46
CCDC88C-205ENST00000553403 CHCHD3Q9NX63 227 aaKnown RBP24.15■■□□□ 1.46
CCDC88C-205ENST00000553403 H2AFY2Q9P0M6 372 aaPredicted RBP24.15■■□□□ 1.46
CCDC88C-205ENST00000553403 A0A1W2PQD3 144 aa24.14■■□□□ 1.45
CCDC88C-205ENST00000553403 SLC2A10O95528 541 aa24.14■■□□□ 1.45
CCDC88C-205ENST00000553403 INHBBP09529 407 aa24.14■■□□□ 1.45
CCDC88C-205ENST00000553403 TUBA1BP68363 451 aa24.14■■□□□ 1.45
CCDC88C-205ENST00000553403 PHF19Q5T6S3 580 aa24.14■■□□□ 1.45
CCDC88C-205ENST00000553403 APOOLQ6UXV4 268 aa24.14■■□□□ 1.45
CCDC88C-205ENST00000553403 THSD4Q6ZMP0 1018 aa24.14■■□□□ 1.45
CCDC88C-205ENST00000553403 TUBA1AQ71U36 451 aa24.14■■□□□ 1.45
CCDC88C-205ENST00000553403 CXXC5Q7LFL8 322 aaKnown RBP24.14■■□□□ 1.45
CCDC88C-205ENST00000553403 OAFQ86UD1 273 aa24.14■■□□□ 1.45
CCDC88C-205ENST00000553403 GATSQ8NAP1 163 aa24.14■■□□□ 1.45
CCDC88C-205ENST00000553403 ZHX1-C8orf76Q96EF9 292 aa24.14■■□□□ 1.45
CCDC88C-205ENST00000553403 SGTBQ96EQ0 304 aa24.14■■□□□ 1.45
CCDC88C-205ENST00000553403 ENKD1Q9H0I2 346 aa24.14■■□□□ 1.45
CCDC88C-205ENST00000553403 HINT3Q9NQE9 182 aaKnown RBP24.14■■□□□ 1.45
CCDC88C-205ENST00000553403 EXOGQ9Y2C4 368 aaKnown RBP24.14■■□□□ 1.45
CCDC88C-205ENST00000553403 CACNA1HO95180 2353 aa24.13■■□□□ 1.45
CCDC88C-205ENST00000553403 VSTM2BA6NLU5 285 aa24.13■■□□□ 1.45
CCDC88C-205ENST00000553403 IDSB3KWA1 339 aa24.13■■□□□ 1.45
CCDC88C-205ENST00000553403 ICOSLGO75144 302 aa24.13■■□□□ 1.45
CCDC88C-205ENST00000553403 IGF2P01344 180 aa24.13■■□□□ 1.45
CCDC88C-205ENST00000553403 PNMTP11086 282 aa24.13■■□□□ 1.45
CCDC88C-205ENST00000553403 FGF5P12034 268 aa24.13■■□□□ 1.45
CCDC88C-205ENST00000553403 ENDOUP21128 410 aaKnown RBP24.13■■□□□ 1.45
CCDC88C-205ENST00000553403 SLC6A6P31641 620 aa24.13■■□□□ 1.45
CCDC88C-205ENST00000553403 SERPINB10P48595 397 aa24.13■■□□□ 1.45
CCDC88C-205ENST00000553403 LIMK1P53667 647 aa24.13■■□□□ 1.45
CCDC88C-205ENST00000553403 PNLIPRP2P54317 469 aa24.13■■□□□ 1.45
CCDC88C-205ENST00000553403 PLCXD2Q0VAA5 305 aa24.13■■□□□ 1.45
CCDC88C-205ENST00000553403 RTL4Q6ZR62 310 aa24.13■■□□□ 1.45
CCDC88C-205ENST00000553403 SHISA6Q6ZSJ9 500 aa24.13■■□□□ 1.45
CCDC88C-205ENST00000553403 SLCO6A1Q86UG4 719 aa24.13■■□□□ 1.45
CCDC88C-205ENST00000553403 PRR22Q8IZ63 422 aa24.13■■□□□ 1.45
CCDC88C-205ENST00000553403 IFT27Q9BW83 186 aa24.13■■□□□ 1.45
CCDC88C-205ENST00000553403 SEMA4CQ9C0C4 833 aa24.13■■□□□ 1.45
CCDC88C-205ENST00000553403 NRSN2Q9GZP1 204 aa24.13■■□□□ 1.45
CCDC88C-205ENST00000553403 CMC2Q9NRP2 79 aa24.13■■□□□ 1.45
CCDC88C-205ENST00000553403 TRAV27A0A087WT01 109 aa24.12■■□□□ 1.45
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms