RNA–Protein interactions for RNA: ENST00000552783.5

LIMA1-214, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,612 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-214ENST00000552783 LINC00303Q3SY05 128 aa4.5□□□□□ -1.69
LIMA1-214ENST00000552783 ACSM3Q53FZ2 586 aa4.5□□□□□ -1.69
LIMA1-214ENST00000552783 ZNF805Q5CZA5 627 aa4.5□□□□□ -1.69
LIMA1-214ENST00000552783 TCEAL5Q5H9L2 206 aa4.5□□□□□ -1.69
LIMA1-214ENST00000552783 PRAMEF14Q5SWL7 426 aa4.5□□□□□ -1.69
LIMA1-214ENST00000552783 PRAMEF13Q5VWM6 474 aa4.5□□□□□ -1.69
LIMA1-214ENST00000552783 C18orf63Q68DL7 685 aa4.5□□□□□ -1.69
LIMA1-214ENST00000552783 OR7E24Q6IFN5 339 aa4.5□□□□□ -1.69
LIMA1-214ENST00000552783 CXXC5Q7LFL8 322 aaKnown RBP4.5□□□□□ -1.69
LIMA1-214ENST00000552783 OVCH2Q7RTZ1 564 aa4.5□□□□□ -1.69
LIMA1-214ENST00000552783 PXKQ7Z7A4 578 aa4.5□□□□□ -1.69
LIMA1-214ENST00000552783 FAM129CQ86XR2 697 aa4.5□□□□□ -1.69
LIMA1-214ENST00000552783 ZNF547Q8IVP9 402 aa4.5□□□□□ -1.69
LIMA1-214ENST00000552783 OR56B4Q8NH76 319 aa4.5□□□□□ -1.69
LIMA1-214ENST00000552783 LILRB1Q8NHL6 650 aaPredicted RBP4.5□□□□□ -1.69
LIMA1-214ENST00000552783 LGALS14Q8TCE9 139 aa4.5□□□□□ -1.69
LIMA1-214ENST00000552783 ACOT12Q8WYK0 555 aa4.5□□□□□ -1.69
LIMA1-214ENST00000552783 TFGQ92734 400 aaPredicted RBP4.5□□□□□ -1.69
LIMA1-214ENST00000552783 ATOH1Q92858 354 aaPredicted RBP4.5□□□□□ -1.69
LIMA1-214ENST00000552783 TIFAQ96CG3 184 aa4.5□□□□□ -1.69
LIMA1-214ENST00000552783 KCTD12Q96CX2 325 aaKnown RBP4.5□□□□□ -1.69
LIMA1-214ENST00000552783 AHCYL2Q96HN2 611 aaKnown RBP4.5□□□□□ -1.69
LIMA1-214ENST00000552783 PAWRQ96IZ0 340 aaKnown RBP4.5□□□□□ -1.69
LIMA1-214ENST00000552783 BTBD1Q9H0C5 482 aa4.5□□□□□ -1.69
LIMA1-214ENST00000552783 OR51V1Q9H2C8 321 aa4.5□□□□□ -1.69
LIMA1-214ENST00000552783 UBQLN3Q9H347 655 aa4.5□□□□□ -1.69
LIMA1-214ENST00000552783 EVA1AQ9H8M9 152 aa4.5□□□□□ -1.69
LIMA1-214ENST00000552783 SYNPO2LQ9H987 977 aa4.5□□□□□ -1.69
LIMA1-214ENST00000552783 IL21Q9HBE4 155 aa4.5□□□□□ -1.69
LIMA1-214ENST00000552783 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP4.5□□□□□ -1.69
LIMA1-214ENST00000552783 IL20Q9NYY1 176 aa4.5□□□□□ -1.69
LIMA1-214ENST00000552783 AHSPQ9NZD4 102 aa4.5□□□□□ -1.69
LIMA1-214ENST00000552783 DEC1Q9P2X7 70 aa4.5□□□□□ -1.69
LIMA1-214ENST00000552783 ZNF69Q9UC07 566 aa4.5□□□□□ -1.69
LIMA1-214ENST00000552783 KIF25Q9UIL4 384 aa4.5□□□□□ -1.69
LIMA1-214ENST00000552783 ENTPD4Q9Y227 616 aa4.5□□□□□ -1.69
LIMA1-214ENST00000552783 KCNK6Q9Y257 313 aa4.5□□□□□ -1.69
LIMA1-214ENST00000552783 CA5BQ9Y2D0 317 aa4.5□□□□□ -1.69
LIMA1-214ENST00000552783 CDHR4A6H8M9 788 aa4.5□□□□□ -1.69
LIMA1-214ENST00000552783 IDSB3KWA1 339 aa4.5□□□□□ -1.69
LIMA1-214ENST00000552783 L7N2F9 121 aa4.5□□□□□ -1.69
LIMA1-214ENST00000552783 KLF4O43474 513 aa4.5□□□□□ -1.69
LIMA1-214ENST00000552783 MTRF1O75570 445 aaKnown RBP4.5□□□□□ -1.69
LIMA1-214ENST00000552783 TMIGD3P0DMS9 266 aaPredicted RBP4.5□□□□□ -1.69
LIMA1-214ENST00000552783 GAAP10253 952 aa4.5□□□□□ -1.69
LIMA1-214ENST00000552783 EPXP11678 715 aa4.5□□□□□ -1.69
LIMA1-214ENST00000552783 CCL5P13501 91 aa4.5□□□□□ -1.69
LIMA1-214ENST00000552783 PRG2P13727 222 aa4.5□□□□□ -1.69
LIMA1-214ENST00000552783 UGT2B7P16662 529 aa4.5□□□□□ -1.69
LIMA1-214ENST00000552783 NFYAP23511 347 aaPredicted RBP4.5□□□□□ -1.69
LIMA1-214ENST00000552783 GCGRP47871 477 aa4.5□□□□□ -1.69
LIMA1-214ENST00000552783 ZNF85Q03923 595 aa4.5□□□□□ -1.69
LIMA1-214ENST00000552783 BAMBIQ13145 260 aa4.5□□□□□ -1.69
LIMA1-214ENST00000552783 SERTAD2Q14140 314 aa4.5□□□□□ -1.69
LIMA1-214ENST00000552783 LTB4RQ15722 352 aa4.5□□□□□ -1.69
LIMA1-214ENST00000552783 ZDHHC20Q5W0Z9 365 aa4.5□□□□□ -1.69
LIMA1-214ENST00000552783 TMEM215Q68D42 235 aa4.5□□□□□ -1.69
LIMA1-214ENST00000552783 CNKSR3Q6P9H4 555 aa4.5□□□□□ -1.69
LIMA1-214ENST00000552783 TMEM88Q6PEY1 159 aa4.5□□□□□ -1.69
LIMA1-214ENST00000552783 APOOLQ6UXV4 268 aa4.5□□□□□ -1.69
LIMA1-214ENST00000552783 ZNF793Q6ZN11 406 aa4.5□□□□□ -1.69
LIMA1-214ENST00000552783 ZNF620Q6ZNG0 422 aa4.5□□□□□ -1.69
LIMA1-214ENST00000552783 ACBD7Q8N6N7 88 aa4.5□□□□□ -1.69
LIMA1-214ENST00000552783 LSM14AQ8ND56 463 aaKnown RBP4.5□□□□□ -1.69
LIMA1-214ENST00000552783 VN1R2Q8NFZ6 395 aa4.5□□□□□ -1.69
LIMA1-214ENST00000552783 OR51L1Q8NGJ5 315 aa4.5□□□□□ -1.69
LIMA1-214ENST00000552783 PFN4Q8NHR9 129 aa4.5□□□□□ -1.69
LIMA1-214ENST00000552783 NUS1Q96E22 293 aa4.5□□□□□ -1.69
LIMA1-214ENST00000552783 WDR34Q96EX3 536 aa4.5□□□□□ -1.69
LIMA1-214ENST00000552783 TRMT2BQ96GJ1 504 aaKnown RBP4.5□□□□□ -1.69
LIMA1-214ENST00000552783 AMDHD1Q96NU7 426 aa4.5□□□□□ -1.69
LIMA1-214ENST00000552783 PDCD1LG2Q9BQ51 273 aa4.5□□□□□ -1.69
LIMA1-214ENST00000552783 ZNF416Q9BWM5 594 aa4.5□□□□□ -1.69
LIMA1-214ENST00000552783 DPH1Q9BZG8 443 aa4.5□□□□□ -1.69
LIMA1-214ENST00000552783 SLC38A1Q9H2H9 487 aa4.5□□□□□ -1.69
LIMA1-214ENST00000552783 KLHL31Q9H511 634 aa4.5□□□□□ -1.69
LIMA1-214ENST00000552783 ESRP2Q9H6T0 727 aaKnown RBP4.5□□□□□ -1.69
LIMA1-214ENST00000552783 P2RX2Q9UBL9 471 aa4.5□□□□□ -1.69
LIMA1-214ENST00000552783 PHF11Q9UIL8 331 aa4.5□□□□□ -1.69
LIMA1-214ENST00000552783 DAPL1A0PJW8 107 aa4.5□□□□□ -1.69
LIMA1-214ENST00000552783 OR2M5A3KFT3 312 aa4.5□□□□□ -1.69
LIMA1-214ENST00000552783 ZNF98A6NK75 572 aa4.5□□□□□ -1.69
LIMA1-214ENST00000552783 H3BSH0 61 aa4.5□□□□□ -1.69
LIMA1-214ENST00000552783 PSMD9O00233 223 aa4.5□□□□□ -1.69
LIMA1-214ENST00000552783 SMAD9O15198 467 aaKnown RBP4.5□□□□□ -1.69
LIMA1-214ENST00000552783 KCNJ13O60928 360 aa4.5□□□□□ -1.69
LIMA1-214ENST00000552783 UBL3O95164 117 aa4.5□□□□□ -1.69
LIMA1-214ENST00000552783 SPDEFO95238 335 aa4.5□□□□□ -1.69
LIMA1-214ENST00000552783 VSIG10L2P0DP72 767 aa4.5□□□□□ -1.69
LIMA1-214ENST00000552783 PCSK2P16519 638 aa4.5□□□□□ -1.69
LIMA1-214ENST00000552783 RAB3BP20337 219 aa4.5□□□□□ -1.69
LIMA1-214ENST00000552783 MAKP20794 623 aa4.5□□□□□ -1.69
LIMA1-214ENST00000552783 FRKP42685 505 aaPredicted RBP4.5□□□□□ -1.69
LIMA1-214ENST00000552783 PRLHRP49683 370 aa4.5□□□□□ -1.69
LIMA1-214ENST00000552783 RPS11P62280 158 aaKnown RBP eCLIP4.5□□□□□ -1.69
LIMA1-214ENST00000552783 TP53I3Q53FA7 332 aa4.5□□□□□ -1.69
LIMA1-214ENST00000552783 HES5Q5TA89 166 aa4.5□□□□□ -1.69
LIMA1-214ENST00000552783 KHDRBS2Q5VWX1 349 aaKnown RBP4.5□□□□□ -1.69
LIMA1-214ENST00000552783 ZNF660Q6AZW8 331 aaPredicted RBP4.5□□□□□ -1.69
LIMA1-214ENST00000552783 NIPAL3Q6P499 406 aa4.5□□□□□ -1.69
Retrieved 100 of 20,778 RNA–protein pairs in 53.3 ms