RNA–Protein interactions for RNA: ENST00000550008.6

CUX1-214, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,350 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-214ENST00000550008 SNTB2Q13425 540 aaKnown RBP13.94□□□□□ -0.18
CUX1-214ENST00000550008 AQP6Q13520 282 aa13.94□□□□□ -0.18
CUX1-214ENST00000550008 TMEM69Q5SWH9 247 aa13.94□□□□□ -0.18
CUX1-214ENST00000550008 LACC1Q8IV20 430 aa13.94□□□□□ -0.18
CUX1-214ENST00000550008 DNAJA4Q8WW22 397 aaPredicted RBP13.94□□□□□ -0.18
CUX1-214ENST00000550008 LINC00615Q96LM1 132 aaPredicted RBP13.94□□□□□ -0.18
CUX1-214ENST00000550008 UBQLN3Q9H347 655 aa13.94□□□□□ -0.18
CUX1-214ENST00000550008 LRRN3Q9H3W5 708 aa13.94□□□□□ -0.18
CUX1-214ENST00000550008 WSB2Q9NYS7 404 aaPredicted RBP13.94□□□□□ -0.18
CUX1-214ENST00000550008 RASD1Q9Y272 281 aa13.94□□□□□ -0.18
CUX1-214ENST00000550008 CORINQ9Y5Q5 1042 aa13.94□□□□□ -0.18
CUX1-214ENST00000550008 UPK1AO00322 258 aa13.94□□□□□ -0.18
CUX1-214ENST00000550008 CSO75390 466 aaKnown RBP13.94□□□□□ -0.18
CUX1-214ENST00000550008 LGI1O95970 557 aa13.94□□□□□ -0.18
CUX1-214ENST00000550008 DCNP07585 359 aaKnown RBP13.94□□□□□ -0.18
CUX1-214ENST00000550008 EMP2P54851 167 aa13.94□□□□□ -0.18
CUX1-214ENST00000550008 RAB38P57729 211 aa13.94□□□□□ -0.18
CUX1-214ENST00000550008 ARL14Q8N4G2 192 aa13.94□□□□□ -0.18
CUX1-214ENST00000550008 TMEM41AQ96HV5 264 aa13.94□□□□□ -0.18
CUX1-214ENST00000550008 NMNAT3Q96T66 252 aa13.94□□□□□ -0.18
CUX1-214ENST00000550008 SDF2Q99470 211 aa13.94□□□□□ -0.18
CUX1-214ENST00000550008 PAQR5Q9NXK6 330 aaPredicted RBP13.94□□□□□ -0.18
CUX1-214ENST00000550008 MMP17Q9ULZ9 603 aa13.94□□□□□ -0.18
CUX1-214ENST00000550008 ITGA5P08648 1049 aa13.94□□□□□ -0.18
CUX1-214ENST00000550008 H2BFMP0C1H6 154 aa13.94□□□□□ -0.18
CUX1-214ENST00000550008 VASPP50552 380 aaPredicted RBP13.94□□□□□ -0.18
CUX1-214ENST00000550008 OR1D5P58170 312 aa13.94□□□□□ -0.18
CUX1-214ENST00000550008 SNRPD2P62316 118 aaKnown RBP13.94□□□□□ -0.18
CUX1-214ENST00000550008 RUNX2Q13950 521 aa13.94□□□□□ -0.18
CUX1-214ENST00000550008 NTRK2Q16620 822 aa13.94□□□□□ -0.18
CUX1-214ENST00000550008 KCTD18Q6PI47 426 aaPredicted RBP13.94□□□□□ -0.18
CUX1-214ENST00000550008 ZNF227Q86WZ6 799 aa13.94□□□□□ -0.18
CUX1-214ENST00000550008 OR10A5Q9H207 317 aa13.94□□□□□ -0.18
CUX1-214ENST00000550008 FGF21Q9NSA1 209 aa13.94□□□□□ -0.18
CUX1-214ENST00000550008 BABAM2Q9NXR7 383 aa13.94□□□□□ -0.18
CUX1-214ENST00000550008 NCDNQ9UBB6 729 aa13.94□□□□□ -0.18
CUX1-214ENST00000550008 BCAT2O15382 392 aaPredicted RBP13.93□□□□□ -0.18
CUX1-214ENST00000550008 STARP49675 285 aa13.93□□□□□ -0.18
CUX1-214ENST00000550008 GDI2P50395 445 aaKnown RBP13.93□□□□□ -0.18
CUX1-214ENST00000550008 MLLT11Q13015 90 aaPredicted RBP13.93□□□□□ -0.18
CUX1-214ENST00000550008 MAPK14Q16539 360 aa13.93□□□□□ -0.18
CUX1-214ENST00000550008 SYT14P1Q58G82 188 aa13.93□□□□□ -0.18
CUX1-214ENST00000550008 SLX4IPQ5VYV7 408 aa13.93□□□□□ -0.18
CUX1-214ENST00000550008 PTCRAQ6ISU1 281 aaPredicted RBP13.93□□□□□ -0.18
CUX1-214ENST00000550008 ZNF836Q6ZNA1 936 aa13.93□□□□□ -0.18
CUX1-214ENST00000550008 MEPCEQ7L2J0 689 aaKnown RBP13.93□□□□□ -0.18
CUX1-214ENST00000550008 SLC35F2Q8IXU6 374 aa13.93□□□□□ -0.18
CUX1-214ENST00000550008 OR8H3Q8N146 312 aa13.93□□□□□ -0.18
CUX1-214ENST00000550008 MS4A15Q8N5U1 240 aa13.93□□□□□ -0.18
CUX1-214ENST00000550008 TOR1AIP2Q8NFQ8 470 aa13.93□□□□□ -0.18
CUX1-214ENST00000550008 OR52I1Q8NGK6 324 aa13.93□□□□□ -0.18
CUX1-214ENST00000550008 SYNPO2LQ9H987 977 aa13.93□□□□□ -0.18
CUX1-214ENST00000550008 HHATLQ9HCP6 504 aa13.93□□□□□ -0.18
CUX1-214ENST00000550008 WASH6PQ9NQA3 447 aa13.93□□□□□ -0.18
CUX1-214ENST00000550008 TBC1D24Q9ULP9 559 aa13.93□□□□□ -0.18
CUX1-214ENST00000550008 BRCA1P38398 1863 aaKnown RBP13.93□□□□□ -0.18
CUX1-214ENST00000550008 TEX13CA0A0J9YWL9 993 aa13.93□□□□□ -0.18
CUX1-214ENST00000550008 A0A1W2PS29 197 aa13.93□□□□□ -0.18
CUX1-214ENST00000550008 OR5K3A6NET4 321 aa13.93□□□□□ -0.18
CUX1-214ENST00000550008 MAGEB4O15481 346 aaPredicted RBP13.93□□□□□ -0.18
CUX1-214ENST00000550008 YES1P07947 543 aa13.93□□□□□ -0.18
CUX1-214ENST00000550008 CD3GP09693 182 aa13.93□□□□□ -0.18
CUX1-214ENST00000550008 OTX2P32243 289 aa13.93□□□□□ -0.18
CUX1-214ENST00000550008 OTPQ5XKR4 325 aa13.93□□□□□ -0.18
CUX1-214ENST00000550008 MED25Q71SY5 747 aa13.93□□□□□ -0.18
CUX1-214ENST00000550008 PRSS41Q7RTY9 318 aa13.93□□□□□ -0.18
CUX1-214ENST00000550008 MAMDC2Q7Z304 686 aaPredicted RBP13.93□□□□□ -0.18
CUX1-214ENST00000550008 ZNF283Q8N7M2 679 aa13.93□□□□□ -0.18
CUX1-214ENST00000550008 SENP5Q96HI0 755 aaPredicted RBP13.93□□□□□ -0.18
CUX1-214ENST00000550008 CACNG6Q9BXT2 260 aa13.93□□□□□ -0.18
CUX1-214ENST00000550008 CHST8Q9H2A9 424 aa13.93□□□□□ -0.18
CUX1-214ENST00000550008 RIF1Q5UIP0 2472 aaKnown RBP13.93□□□□□ -0.18
CUX1-214ENST00000550008 MIA3Q5JRA6 1907 aa13.93□□□□□ -0.18
CUX1-214ENST00000550008 AGAP14A8MT82 685 aa13.93□□□□□ -0.18
CUX1-214ENST00000550008 SRPX2O60687 465 aaPredicted RBP13.93□□□□□ -0.18
CUX1-214ENST00000550008 COL9A1P20849 921 aa13.93□□□□□ -0.18
CUX1-214ENST00000550008 MAGEA2P43356 314 aa13.93□□□□□ -0.18
CUX1-214ENST00000550008 TGM4P49221 684 aa13.93□□□□□ -0.18
CUX1-214ENST00000550008 GFERP55789 205 aa13.93□□□□□ -0.18
CUX1-214ENST00000550008 ATXN7L3Q14CW9 347 aaPredicted RBP13.93□□□□□ -0.18
CUX1-214ENST00000550008 ZNF511Q8NB15 262 aa13.93□□□□□ -0.18
CUX1-214ENST00000550008 BCL7BQ9BQE9 202 aa13.93□□□□□ -0.18
CUX1-214ENST00000550008 FOLH1BQ9HBA9 442 aa13.93□□□□□ -0.18
CUX1-214ENST00000550008 PLRG1O43660 514 aaKnown RBP13.92□□□□□ -0.18
CUX1-214ENST00000550008 MRPS14O60783 128 aaKnown RBP13.92□□□□□ -0.18
CUX1-214ENST00000550008 CLDN12P56749 244 aa13.92□□□□□ -0.18
CUX1-214ENST00000550008 CLRN1P58418 232 aa13.92□□□□□ -0.18
CUX1-214ENST00000550008 MAB21L1Q13394 359 aa13.92□□□□□ -0.18
CUX1-214ENST00000550008 STEAP3Q658P3 488 aa13.92□□□□□ -0.18
CUX1-214ENST00000550008 SLC35D2Q76EJ3 337 aa13.92□□□□□ -0.18
CUX1-214ENST00000550008 NRARPQ7Z6K4 114 aa13.92□□□□□ -0.18
CUX1-214ENST00000550008 C7orf34Q96L11 122 aa13.92□□□□□ -0.18
CUX1-214ENST00000550008 NUDT22Q9BRQ3 303 aa13.92□□□□□ -0.18
CUX1-214ENST00000550008 DKKL1Q9UK85 242 aa13.92□□□□□ -0.18
CUX1-214ENST00000550008 SLC35A3Q9Y2D2 325 aa13.92□□□□□ -0.18
CUX1-214ENST00000550008 DCDC2BA2VCK2 349 aa13.92□□□□□ -0.18
CUX1-214ENST00000550008 ACOD1A6NK06 481 aa13.92□□□□□ -0.18
CUX1-214ENST00000550008 VSTM2BA6NLU5 285 aa13.92□□□□□ -0.18
CUX1-214ENST00000550008 GSTT2BP0CG30 244 aa13.92□□□□□ -0.18
CUX1-214ENST00000550008 OR8G3PP0DMU2 310 aa13.92□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 45.1 ms