RNA–Protein interactions for RNA: ENST00000543545.5

CPSF7-221, Transcript of cleavage and polyadenylation specific factor 7, human

TSL 5

Gene CPSF7, Length 495 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CPSF7-221	ENST00000543545	SERINC1	Q9NRX5	453 aa		9.21	□□□□□ -0.94
CPSF7-221	ENST00000543545	ACER3	Q9NUN7	267 aa		9.21	□□□□□ -0.94
CPSF7-221	ENST00000543545	TES	Q9UGI8	421 aa	Known RBP	9.21	□□□□□ -0.94
CPSF7-221	ENST00000543545	MRPS18C	Q9Y3D5	142 aa	Known RBP	9.21	□□□□□ -0.94
CPSF7-221	ENST00000543545		A0A1B0GWA3	101 aa		9.2	□□□□□ -0.94
CPSF7-221	ENST00000543545	DHRS12	A0PJE2	317 aa		9.2	□□□□□ -0.94
CPSF7-221	ENST00000543545	TMEM229A	B2RXF0	380 aa		9.2	□□□□□ -0.94
CPSF7-221	ENST00000543545	hCG_2039718	K7EN88	272 aa		9.2	□□□□□ -0.94
CPSF7-221	ENST00000543545	RRP9	O43818	475 aa	Known RBP	9.2	□□□□□ -0.94
CPSF7-221	ENST00000543545	HCN1	O60741	890 aa		9.2	□□□□□ -0.94
CPSF7-221	ENST00000543545	FMO6P	O60774	539 aa		9.2	□□□□□ -0.94
CPSF7-221	ENST00000543545	PRB1	P04280	392 aa		9.2	□□□□□ -0.94
CPSF7-221	ENST00000543545	FABP3	P05413	133 aa		9.2	□□□□□ -0.94
CPSF7-221	ENST00000543545	PEPD	P12955	493 aa		9.2	□□□□□ -0.94
CPSF7-221	ENST00000543545	PRKCA	P17252	672 aa		9.2	□□□□□ -0.94
CPSF7-221	ENST00000543545	ITGA2	P17301	1181 aa		9.2	□□□□□ -0.94
CPSF7-221	ENST00000543545	CXCR1	P25024	350 aa		9.2	□□□□□ -0.94
CPSF7-221	ENST00000543545	PSMA4	P25789	261 aa	Known RBP	9.2	□□□□□ -0.94
CPSF7-221	ENST00000543545	TACR3	P29371	465 aa		9.2	□□□□□ -0.94
CPSF7-221	ENST00000543545	HTR3A	P46098	478 aa		9.2	□□□□□ -0.94
CPSF7-221	ENST00000543545	ZNF136	P52737	540 aa		9.2	□□□□□ -0.94
CPSF7-221	ENST00000543545	NPTX1	Q15818	432 aa		9.2	□□□□□ -0.94
CPSF7-221	ENST00000543545	ENTPD8	Q5MY95	495 aa		9.2	□□□□□ -0.94
CPSF7-221	ENST00000543545	ARHGAP11A	Q6P4F7	1023 aa		9.2	□□□□□ -0.94
CPSF7-221	ENST00000543545	GFRAL	Q6UXV0	394 aa		9.2	□□□□□ -0.94
CPSF7-221	ENST00000543545	TRIL	Q7L0X0	811 aa		9.2	□□□□□ -0.94
CPSF7-221	ENST00000543545	PRICKLE2	Q7Z3G6	844 aa		9.2	□□□□□ -0.94
CPSF7-221	ENST00000543545	GRINA	Q7Z429	371 aa		9.2	□□□□□ -0.94
CPSF7-221	ENST00000543545	SIAH3	Q8IW03	269 aa		9.2	□□□□□ -0.94
CPSF7-221	ENST00000543545	GHDC	Q8N2G8	530 aa		9.2	□□□□□ -0.94
CPSF7-221	ENST00000543545	GTPBP8	Q8N3Z3	284 aa	Predicted RBP	9.2	□□□□□ -0.94
CPSF7-221	ENST00000543545	ABTB1	Q969K4	478 aa	Predicted RBP	9.2	□□□□□ -0.94
CPSF7-221	ENST00000543545	GPR137	Q96N19	417 aa		9.2	□□□□□ -0.94
CPSF7-221	ENST00000543545	BBC3	Q96PG8	261 aa	Predicted RBP	9.2	□□□□□ -0.94
CPSF7-221	ENST00000543545	FNDC11	Q9BVV2	318 aa		9.2	□□□□□ -0.94
CPSF7-221	ENST00000543545	TMEM185B	Q9H7F4	350 aa		9.2	□□□□□ -0.94
CPSF7-221	ENST00000543545	ALKBH4	Q9NXW9	302 aa		9.2	□□□□□ -0.94
CPSF7-221	ENST00000543545	STOML1	Q9UBI4	398 aa		9.2	□□□□□ -0.94
CPSF7-221	ENST00000543545	ACAD8	Q9UKU7	415 aa		9.2	□□□□□ -0.94
CPSF7-221	ENST00000543545	LIPG	Q9Y5X9	500 aa		9.2	□□□□□ -0.94
CPSF7-221	ENST00000543545	TMED7-TICAM2	A0A0A6YYA0	188 aa		9.19	□□□□□ -0.94
CPSF7-221	ENST00000543545		A0A1B0GTH9	108 aa		9.19	□□□□□ -0.94
CPSF7-221	ENST00000543545	TCRBV5S2	A0A599	114 aa		9.19	□□□□□ -0.94
CPSF7-221	ENST00000543545	OR2M5	A3KFT3	312 aa		9.19	□□□□□ -0.94
CPSF7-221	ENST00000543545	TRAPPC13	A5PLN9	417 aa		9.19	□□□□□ -0.94
CPSF7-221	ENST00000543545	ELOA3D	A6NLF2	546 aa	Predicted RBP	9.19	□□□□□ -0.94
CPSF7-221	ENST00000543545	NPIPA2	E9PIF3	369 aa		9.19	□□□□□ -0.94
CPSF7-221	ENST00000543545	NPIPA3	F8WFD2	350 aa		9.19	□□□□□ -0.94
CPSF7-221	ENST00000543545		H3BML4	177 aa		9.19	□□□□□ -0.94
CPSF7-221	ENST00000543545	LINC01387	J3KSC0	135 aa		9.19	□□□□□ -0.94
CPSF7-221	ENST00000543545	FAAH	O00519	579 aa		9.19	□□□□□ -0.94
CPSF7-221	ENST00000543545	TPST2	O60704	377 aa		9.19	□□□□□ -0.94
CPSF7-221	ENST00000543545	WISP2	O76076	250 aa		9.19	□□□□□ -0.94
CPSF7-221	ENST00000543545	OPN1LW	P04000	364 aa		9.19	□□□□□ -0.94
CPSF7-221	ENST00000543545	GPI	P06744	558 aa		9.19	□□□□□ -0.94
CPSF7-221	ENST00000543545	TFPI	P10646	304 aa		9.19	□□□□□ -0.94
CPSF7-221	ENST00000543545	UMPS	P11172	480 aa		9.19	□□□□□ -0.94
CPSF7-221	ENST00000543545	ZNF17	P17021	662 aa		9.19	□□□□□ -0.94
CPSF7-221	ENST00000543545	BMP7	P18075	431 aa		9.19	□□□□□ -0.94
CPSF7-221	ENST00000543545	POU3F2	P20265	443 aa	Predicted RBP	9.19	□□□□□ -0.94
CPSF7-221	ENST00000543545	HTR2A	P28223	471 aa		9.19	□□□□□ -0.94
CPSF7-221	ENST00000543545	ADH6	P28332	368 aa		9.19	□□□□□ -0.94
CPSF7-221	ENST00000543545	APOBEC1	P41238	236 aa	Known RBP	9.19	□□□□□ -0.94
CPSF7-221	ENST00000543545	STAR	P49675	285 aa		9.19	□□□□□ -0.94
CPSF7-221	ENST00000543545	POLR2H	P52434	150 aa	Known RBP	9.19	□□□□□ -0.94
CPSF7-221	ENST00000543545	HSF1	Q00613	529 aa		9.19	□□□□□ -0.94
CPSF7-221	ENST00000543545	SRY	Q05066	204 aa		9.19	□□□□□ -0.94
CPSF7-221	ENST00000543545	PIN1	Q13526	163 aa	Predicted RBP	9.19	□□□□□ -0.94
CPSF7-221	ENST00000543545	KPNB1	Q14974	876 aa	Known RBP	9.19	□□□□□ -0.94
CPSF7-221	ENST00000543545	ZNF800	Q2TB10	664 aa	Predicted RBP eCLIP	9.19	□□□□□ -0.94
CPSF7-221	ENST00000543545	ELOA3B	Q3SY89	546 aa		9.19	□□□□□ -0.94
CPSF7-221	ENST00000543545	SOWAHC	Q53LP3	525 aa	Predicted RBP	9.19	□□□□□ -0.94
CPSF7-221	ENST00000543545	ALG10B	Q5I7T1	473 aa		9.19	□□□□□ -0.94
CPSF7-221	ENST00000543545	ULK3	Q6PHR2	472 aa		9.19	□□□□□ -0.94
CPSF7-221	ENST00000543545	ZDHHC21	Q8IVQ6	265 aa		9.19	□□□□□ -0.94
CPSF7-221	ENST00000543545	UBQLNL	Q8IYU4	475 aa		9.19	□□□□□ -0.94
CPSF7-221	ENST00000543545	ELOA3	Q8NG57	546 aa		9.19	□□□□□ -0.94
CPSF7-221	ENST00000543545	NEIL3	Q8TAT5	605 aa		9.19	□□□□□ -0.94
CPSF7-221	ENST00000543545	POC1B	Q8TC44	478 aa		9.19	□□□□□ -0.94
CPSF7-221	ENST00000543545	DNAJA4	Q8WW22	397 aa	Predicted RBP	9.19	□□□□□ -0.94
CPSF7-221	ENST00000543545	SARAF	Q96BY9	339 aa		9.19	□□□□□ -0.94
CPSF7-221	ENST00000543545	ZNF524	Q96C55	264 aa		9.19	□□□□□ -0.94
CPSF7-221	ENST00000543545	SLC41A3	Q96GZ6	507 aa		9.19	□□□□□ -0.94
CPSF7-221	ENST00000543545	AMBRA1	Q9C0C7	1298 aa		9.19	□□□□□ -0.94
CPSF7-221	ENST00000543545	RHCG	Q9UBD6	479 aa		9.19	□□□□□ -0.94
CPSF7-221	ENST00000543545	TNFRSF10D	Q9UBN6	386 aa		9.19	□□□□□ -0.94
CPSF7-221	ENST00000543545	RALY	Q9UKM9	306 aa	Known RBP	9.19	□□□□□ -0.94
CPSF7-221	ENST00000543545	PRDM4	Q9UKN5	801 aa		9.19	□□□□□ -0.94
CPSF7-221	ENST00000543545	TMED7	Q9Y3B3	224 aa		9.19	□□□□□ -0.94
CPSF7-221	ENST00000543545	ZNF337	Q9Y3M9	751 aa		9.19	□□□□□ -0.94
CPSF7-221	ENST00000543545	SPIN1	Q9Y657	262 aa	Predicted RBP	9.19	□□□□□ -0.94
CPSF7-221	ENST00000543545	ENPP4	Q9Y6X5	453 aa		9.19	□□□□□ -0.94
CPSF7-221	ENST00000543545	TNRC6A	Q8NDV7	1962 aa	Known RBP	9.19	□□□□□ -0.94
CPSF7-221	ENST00000543545	C7orf72	A4D263	438 aa		9.18	□□□□□ -0.94
CPSF7-221	ENST00000543545		B8ZZF3	427 aa		9.18	□□□□□ -0.94
CPSF7-221	ENST00000543545		J3KTA2	159 aa		9.18	□□□□□ -0.94
CPSF7-221	ENST00000543545	AQP7	O14520	342 aa		9.18	□□□□□ -0.94
CPSF7-221	ENST00000543545	ZNHIT1	O43257	154 aa		9.18	□□□□□ -0.94
CPSF7-221	ENST00000543545	SEC14L5	O43304	696 aa		9.18	□□□□□ -0.94
CPSF7-221	ENST00000543545	SUSD5	O60279	629 aa		9.18	□□□□□ -0.94

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