RNA–Protein interactions for RNA: ENST00000531118.5

CD44-232, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 877 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-232ENST00000531118 ESRRBO95718 433 aa7.12□□□□□ -1.27
CD44-232ENST00000531118 ERCC1P07992 297 aaPredicted RBP7.12□□□□□ -1.27
CD44-232ENST00000531118 IL3P08700 152 aa7.12□□□□□ -1.27
CD44-232ENST00000531118 GAAP10253 952 aa7.12□□□□□ -1.27
CD44-232ENST00000531118 MTHFD2P13995 350 aa7.12□□□□□ -1.27
CD44-232ENST00000531118 STMN1P16949 149 aa7.12□□□□□ -1.27
CD44-232ENST00000531118 ADRA2CP18825 462 aa7.12□□□□□ -1.27
CD44-232ENST00000531118 RBMXP38159 391 aaKnown RBP7.12□□□□□ -1.27
CD44-232ENST00000531118 ARL1P40616 181 aaPredicted RBP7.12□□□□□ -1.27
CD44-232ENST00000531118 EIF1P41567 113 aaKnown RBP7.12□□□□□ -1.27
CD44-232ENST00000531118 IL1RL1Q01638 556 aa7.12□□□□□ -1.27
CD44-232ENST00000531118 DLG1Q12959 904 aa7.12□□□□□ -1.27
CD44-232ENST00000531118 SELENBP1Q13228 472 aa7.12□□□□□ -1.27
CD44-232ENST00000531118 GTF2H2Q13888 395 aa7.12□□□□□ -1.27
CD44-232ENST00000531118 TMEM176BQ3YBM2 270 aaPredicted RBP7.12□□□□□ -1.27
CD44-232ENST00000531118 FRG2Q64ET8 278 aa7.12□□□□□ -1.27
CD44-232ENST00000531118 OR7E24Q6IFN5 339 aa7.12□□□□□ -1.27
CD44-232ENST00000531118 GTF2H2CQ6P1K8 395 aa7.12□□□□□ -1.27
CD44-232ENST00000531118 FAHD2BQ6P2I3 314 aaPredicted RBP7.12□□□□□ -1.27
CD44-232ENST00000531118 CCDC137Q6PK04 289 aaKnown RBP7.12□□□□□ -1.27
CD44-232ENST00000531118 C1QL4Q86Z23 238 aa7.12□□□□□ -1.27
CD44-232ENST00000531118 MAGOHBQ96A72 148 aaKnown RBP7.12□□□□□ -1.27
CD44-232ENST00000531118 APH1AQ96BI3 265 aa7.12□□□□□ -1.27
CD44-232ENST00000531118 FAHD2AQ96GK7 314 aa7.12□□□□□ -1.27
CD44-232ENST00000531118 FRG2BQ96QU4 278 aa7.12□□□□□ -1.27
CD44-232ENST00000531118 GPR22Q99680 433 aa7.12□□□□□ -1.27
CD44-232ENST00000531118 LMF2Q9BU23 707 aaKnown RBP7.12□□□□□ -1.27
CD44-232ENST00000531118 TRIM5Q9C035 493 aa7.12□□□□□ -1.27
CD44-232ENST00000531118 IPPKQ9H8X2 491 aa7.12□□□□□ -1.27
CD44-232ENST00000531118 ZMAT3Q9HA38 289 aaKnown RBP7.12□□□□□ -1.27
CD44-232ENST00000531118 HHATLQ9HCP6 504 aa7.12□□□□□ -1.27
CD44-232ENST00000531118 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP7.12□□□□□ -1.27
CD44-232ENST00000531118 SLC17A5Q9NRA2 495 aa7.12□□□□□ -1.27
CD44-232ENST00000531118 ACSS1Q9NUB1 689 aaPredicted RBP7.12□□□□□ -1.27
CD44-232ENST00000531118 GIMAP4Q9NUV9 329 aa7.12□□□□□ -1.27
CD44-232ENST00000531118 NSMCE4AQ9NXX6 385 aa7.12□□□□□ -1.27
CD44-232ENST00000531118 GUCA1BQ9UMX6 200 aa7.12□□□□□ -1.27
CD44-232ENST00000531118 SLC12A4Q9UP95 1085 aa7.12□□□□□ -1.27
CD44-232ENST00000531118 TEX264Q9Y6I9 313 aa7.12□□□□□ -1.27
CD44-232ENST00000531118 ARHGAP32A7KAX9 2087 aa7.12□□□□□ -1.27
CD44-232ENST00000531118 A0A087WV62 115 aa7.11□□□□□ -1.27
CD44-232ENST00000531118 LYNX1G3V0Z9 82 aa7.11□□□□□ -1.27
CD44-232ENST00000531118 PDLIM1O00151 329 aa7.11□□□□□ -1.27
CD44-232ENST00000531118 ZNF195O14628 629 aa7.11□□□□□ -1.27
CD44-232ENST00000531118 PIAS1O75925 651 aa7.11□□□□□ -1.27
CD44-232ENST00000531118 KCNH1O95259 989 aa7.11□□□□□ -1.27
CD44-232ENST00000531118 H6PDO95479 791 aa7.11□□□□□ -1.27
CD44-232ENST00000531118 FSHBP01225 129 aa7.11□□□□□ -1.27
CD44-232ENST00000531118 NGFRP08138 427 aa7.11□□□□□ -1.27
CD44-232ENST00000531118 OR4A8P0C604 315 aa7.11□□□□□ -1.27
CD44-232ENST00000531118 LYNX1P0DP58 116 aa7.11□□□□□ -1.27
CD44-232ENST00000531118 SLC7A1P30825 629 aa7.11□□□□□ -1.27
CD44-232ENST00000531118 CXCR5P32302 372 aa7.11□□□□□ -1.27
CD44-232ENST00000531118 GP5P40197 560 aa7.11□□□□□ -1.27
CD44-232ENST00000531118 SLC1A3P43003 542 aa7.11□□□□□ -1.27
CD44-232ENST00000531118 GPR6P46095 362 aaPredicted RBP7.11□□□□□ -1.27
CD44-232ENST00000531118 RAC3P60763 192 aa7.11□□□□□ -1.27
CD44-232ENST00000531118 TRA2BP62995 288 aaKnown RBP7.11□□□□□ -1.27
CD44-232ENST00000531118 TRAF3Q13114 568 aa7.11□□□□□ -1.27
CD44-232ENST00000531118 SLC29A2Q14542 456 aa7.11□□□□□ -1.27
CD44-232ENST00000531118 ZNHIT3Q15649 155 aaPredicted RBP7.11□□□□□ -1.27
CD44-232ENST00000531118 CD226Q15762 336 aa7.11□□□□□ -1.27
CD44-232ENST00000531118 GLE1Q53GS7 698 aaKnown RBP7.11□□□□□ -1.27
CD44-232ENST00000531118 C9orf135Q5VTT2 229 aa7.11□□□□□ -1.27
CD44-232ENST00000531118 TTC19Q6DKK2 380 aaPredicted RBP7.11□□□□□ -1.27
CD44-232ENST00000531118 LRFN4Q6PJG9 635 aa7.11□□□□□ -1.27
CD44-232ENST00000531118 VHLLQ6RSH7 139 aa7.11□□□□□ -1.27
CD44-232ENST00000531118 TMEM107Q6UX40 140 aa7.11□□□□□ -1.27
CD44-232ENST00000531118 ISCA2Q86U28 154 aa7.11□□□□□ -1.27
CD44-232ENST00000531118 MISPQ8IVT2 679 aa7.11□□□□□ -1.27
CD44-232ENST00000531118 SAMD14Q8IZD0 417 aaPredicted RBP7.11□□□□□ -1.27
CD44-232ENST00000531118 C1orf52Q8N6N3 182 aaKnown RBP7.11□□□□□ -1.27
CD44-232ENST00000531118 C1orf162Q8NEQ5 155 aaPredicted RBP7.11□□□□□ -1.27
CD44-232ENST00000531118 OR52E4Q8NGH9 312 aa7.11□□□□□ -1.27
CD44-232ENST00000531118 B4GALNT2Q8NHY0 566 aa7.11□□□□□ -1.27
CD44-232ENST00000531118 FBXO27Q8NI29 283 aa7.11□□□□□ -1.27
CD44-232ENST00000531118 C22orf15Q8WYQ4 148 aa7.11□□□□□ -1.27
CD44-232ENST00000531118 MRGPRX4Q96LA9 322 aa7.11□□□□□ -1.27
CD44-232ENST00000531118 MUS81Q96NY9 551 aa7.11□□□□□ -1.27
CD44-232ENST00000531118 DUX5Q96PT3 197 aa7.11□□□□□ -1.27
CD44-232ENST00000531118 NTN4Q9HB63 628 aa7.11□□□□□ -1.27
CD44-232ENST00000531118 DYNLRB1Q9NP97 96 aa7.11□□□□□ -1.27
CD44-232ENST00000531118 DDX18Q9NVP1 670 aaKnown RBP7.11□□□□□ -1.27
CD44-232ENST00000531118 ASB6Q9NWX5 421 aa7.11□□□□□ -1.27
CD44-232ENST00000531118 EMC3Q9P0I2 261 aa7.11□□□□□ -1.27
CD44-232ENST00000531118 DNAH9Q9NYC9 4486 aa7.11□□□□□ -1.27
CD44-232ENST00000531118 IGKV3D-15A0A087WSY6 115 aa7.1□□□□□ -1.27
CD44-232ENST00000531118 IGHV1-18A0A0C4DH31 117 aa7.1□□□□□ -1.27
CD44-232ENST00000531118 SYCE1LA8MT33 242 aa7.1□□□□□ -1.27
CD44-232ENST00000531118 hCG_2039718K7EN88 272 aa7.1□□□□□ -1.27
CD44-232ENST00000531118 UPK1AO00322 258 aa7.1□□□□□ -1.27
CD44-232ENST00000531118 OR7A17O14581 309 aa7.1□□□□□ -1.27
CD44-232ENST00000531118 PIN1P1O15428 100 aa7.1□□□□□ -1.27
CD44-232ENST00000531118 SLITRK5O94991 958 aa7.1□□□□□ -1.27
CD44-232ENST00000531118 PRSS23O95084 383 aa7.1□□□□□ -1.27
CD44-232ENST00000531118 PF4P02776 101 aa7.1□□□□□ -1.27
CD44-232ENST00000531118 IGFBP1P08833 259 aaPredicted RBP7.1□□□□□ -1.27
CD44-232ENST00000531118 GFAPP14136 432 aa7.1□□□□□ -1.27
CD44-232ENST00000531118 MDKP21741 143 aaPredicted RBP7.1□□□□□ -1.27
CD44-232ENST00000531118 PRTN3P24158 256 aa7.1□□□□□ -1.27
Retrieved 100 of 20,778 RNA–protein pairs in 60.3 ms