RNA–Protein interactions for RNA: ENST00000531032.5

VPS28-214, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 1 (best)

Gene VPS28, Length 573 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-214ENST00000531032 TRMT61AQ96FX7 289 aaKnown RBP10.06□□□□□ -0.8
VPS28-214ENST00000531032 SDF2Q99470 211 aa10.06□□□□□ -0.8
VPS28-214ENST00000531032 DUSP26Q9BV47 211 aa10.06□□□□□ -0.8
VPS28-214ENST00000531032 PARD6BQ9BYG5 372 aa10.06□□□□□ -0.8
VPS28-214ENST00000531032 TRIM2Q9C040 744 aa10.06□□□□□ -0.8
VPS28-214ENST00000531032 SERHL2Q9H4I8 314 aa10.06□□□□□ -0.8
VPS28-214ENST00000531032 KCNE5Q9UJ90 142 aa10.06□□□□□ -0.8
VPS28-214ENST00000531032 MAGED1Q9Y5V3 778 aaPredicted RBP10.06□□□□□ -0.8
VPS28-214ENST00000531032 CHD3Q12873 2000 aaKnown RBP10.06□□□□□ -0.8
VPS28-214ENST00000531032 SONP18583 2426 aaKnown RBP10.05□□□□□ -0.8
VPS28-214ENST00000531032 CADP27708 2225 aa10.05□□□□□ -0.8
VPS28-214ENST00000531032 DPRXA6NFQ7 191 aa10.05□□□□□ -0.8
VPS28-214ENST00000531032 SERINC4A6NH21 518 aa10.05□□□□□ -0.8
VPS28-214ENST00000531032 ZNF724A8MTY0 619 aa10.05□□□□□ -0.8
VPS28-214ENST00000531032 RNF223E7ERA6 249 aa10.05□□□□□ -0.8
VPS28-214ENST00000531032 CFLARO15519 480 aa10.05□□□□□ -0.8
VPS28-214ENST00000531032 CRLF1O75462 422 aa10.05□□□□□ -0.8
VPS28-214ENST00000531032 SKAP2O75563 359 aaPredicted RBP10.05□□□□□ -0.8
VPS28-214ENST00000531032 H6PDO95479 791 aa10.05□□□□□ -0.8
VPS28-214ENST00000531032 AK1P00568 194 aa10.05□□□□□ -0.8
VPS28-214ENST00000531032 MYZAPP0CAP1 466 aa10.05□□□□□ -0.8
VPS28-214ENST00000531032 COX5AP20674 150 aa10.05□□□□□ -0.8
VPS28-214ENST00000531032 IDUAP35475 653 aa10.05□□□□□ -0.8
VPS28-214ENST00000531032 CCR4P51679 360 aa10.05□□□□□ -0.8
VPS28-214ENST00000531032 RPS26P62854 115 aaKnown RBP10.05□□□□□ -0.8
VPS28-214ENST00000531032 DMTNQ08495 405 aa10.05□□□□□ -0.8
VPS28-214ENST00000531032 RASGEF1BQ0VAM2 473 aa10.05□□□□□ -0.8
VPS28-214ENST00000531032 TIGD2Q4W5G0 525 aa10.05□□□□□ -0.8
VPS28-214ENST00000531032 HEPHL1Q6MZM0 1159 aa10.05□□□□□ -0.8
VPS28-214ENST00000531032 SSX8Q7RTT4 187 aa10.05□□□□□ -0.8
VPS28-214ENST00000531032 KBTBD8Q8NFY9 601 aa10.05□□□□□ -0.8
VPS28-214ENST00000531032 RFWD2Q8NHY2 731 aa10.05□□□□□ -0.8
VPS28-214ENST00000531032 ST8SIA1Q92185 356 aa10.05□□□□□ -0.8
VPS28-214ENST00000531032 ZNF75CPQ92670 426 aaPredicted RBP10.05□□□□□ -0.8
VPS28-214ENST00000531032 GTPBP3Q969Y2 492 aaKnown RBP10.05□□□□□ -0.8
VPS28-214ENST00000531032 ARL8AQ96BM9 186 aa10.05□□□□□ -0.8
VPS28-214ENST00000531032 TUBGCP3Q96CW5 907 aa10.05□□□□□ -0.8
VPS28-214ENST00000531032 OR5B2Q96R09 309 aa10.05□□□□□ -0.8
VPS28-214ENST00000531032 ZNF300Q96RE9 604 aaPredicted RBP10.05□□□□□ -0.8
VPS28-214ENST00000531032 GRIP2Q9C0E4 1043 aa10.05□□□□□ -0.8
VPS28-214ENST00000531032 ZNF350Q9GZX5 532 aa10.05□□□□□ -0.8
VPS28-214ENST00000531032 LAT2Q9GZY6 243 aa10.05□□□□□ -0.8
VPS28-214ENST00000531032 PRSS50Q9UI38 385 aa10.05□□□□□ -0.8
VPS28-214ENST00000531032 ZDHHC2Q9UIJ5 367 aa10.05□□□□□ -0.8
VPS28-214ENST00000531032 LIPT1Q9Y234 373 aa10.05□□□□□ -0.8
VPS28-214ENST00000531032 ATRQ13535 2644 aa10.05□□□□□ -0.8
VPS28-214ENST00000531032 FBN1P35555 2871 aaKnown RBP10.05□□□□□ -0.8
VPS28-214ENST00000531032 CR1P17927 2039 aa10.05□□□□□ -0.8
VPS28-214ENST00000531032 GOLGA8QA0A0J9YX86 632 aa10.04□□□□□ -0.8
VPS28-214ENST00000531032 CENPVL1A0A0U1RR11 272 aa10.04□□□□□ -0.8
VPS28-214ENST00000531032 A0A1W2PP18 115 aa10.04□□□□□ -0.8
VPS28-214ENST00000531032 GOLGA8OA6NCC3 632 aa10.04□□□□□ -0.8
VPS28-214ENST00000531032 DUXAA6NLW8 204 aa10.04□□□□□ -0.8
VPS28-214ENST00000531032 SHISA9B4DS77 424 aa10.04□□□□□ -0.8
VPS28-214ENST00000531032 GOLGA8NF8WBI6 632 aa10.04□□□□□ -0.8
VPS28-214ENST00000531032 FCMRO60667 390 aa10.04□□□□□ -0.8
VPS28-214ENST00000531032 STX11O75558 287 aa10.04□□□□□ -0.8
VPS28-214ENST00000531032 LYZL6O75951 148 aa10.04□□□□□ -0.8
VPS28-214ENST00000531032 CD8AP01732 235 aa10.04□□□□□ -0.8
VPS28-214ENST00000531032 FESP07332 822 aa10.04□□□□□ -0.8
VPS28-214ENST00000531032 BPGMP07738 259 aa10.04□□□□□ -0.8
VPS28-214ENST00000531032 G6PDP11413 515 aa10.04□□□□□ -0.8
VPS28-214ENST00000531032 MATN1P21941 496 aa10.04□□□□□ -0.8
VPS28-214ENST00000531032 IGHV1-2P23083 117 aa10.04□□□□□ -0.8
VPS28-214ENST00000531032 EDNRAP25101 427 aa10.04□□□□□ -0.8
VPS28-214ENST00000531032 SOAT1P35610 550 aa10.04□□□□□ -0.8
VPS28-214ENST00000531032 CDKN1AP38936 164 aa10.04□□□□□ -0.8
VPS28-214ENST00000531032 DIO1P49895 249 aa10.04□□□□□ -0.8
VPS28-214ENST00000531032 CLDN8P56748 225 aa10.04□□□□□ -0.8
VPS28-214ENST00000531032 EMX2Q04743 252 aa10.04□□□□□ -0.8
VPS28-214ENST00000531032 MAD2L1Q13257 205 aaPredicted RBP10.04□□□□□ -0.8
VPS28-214ENST00000531032 PPA1Q15181 289 aa10.04□□□□□ -0.8
VPS28-214ENST00000531032 ARHGAP11BQ3KRB8 267 aa10.04□□□□□ -0.8
VPS28-214ENST00000531032 TIMM23BQ5SRD1 257 aa10.04□□□□□ -0.8
VPS28-214ENST00000531032 CEP85LQ5SZL2 805 aa10.04□□□□□ -0.8
VPS28-214ENST00000531032 ABLIM2Q6H8Q1 611 aa10.04□□□□□ -0.8
VPS28-214ENST00000531032 DNM1P46Q6ZS02 220 aa10.04□□□□□ -0.8
VPS28-214ENST00000531032 CXXC5Q7LFL8 322 aaKnown RBP10.04□□□□□ -0.8
VPS28-214ENST00000531032 C6orf120Q7Z4R8 191 aa10.04□□□□□ -0.8
VPS28-214ENST00000531032 DTX2Q86UW9 622 aa10.04□□□□□ -0.8
VPS28-214ENST00000531032 NUDCD3Q8IVD9 361 aa10.04□□□□□ -0.8
VPS28-214ENST00000531032 MAPK1IP1LQ8NDC0 245 aa10.04□□□□□ -0.8
VPS28-214ENST00000531032 MIPOL1Q8TD10 442 aa10.04□□□□□ -0.8
VPS28-214ENST00000531032 OIT3Q8WWZ8 545 aa10.04□□□□□ -0.8
VPS28-214ENST00000531032 PKNOX2Q96KN3 472 aa10.04□□□□□ -0.8
VPS28-214ENST00000531032 TRAF4Q9BUZ4 470 aaPredicted RBP10.04□□□□□ -0.8
VPS28-214ENST00000531032 THUMPD3Q9BV44 507 aaKnown RBP10.04□□□□□ -0.8
VPS28-214ENST00000531032 TMEM109Q9BVC6 243 aa10.04□□□□□ -0.8
VPS28-214ENST00000531032 REG4Q9BYZ8 158 aa10.04□□□□□ -0.8
VPS28-214ENST00000531032 QRSL1Q9H0R6 528 aaKnown RBP10.04□□□□□ -0.8
VPS28-214ENST00000531032 SLCO5A1Q9H2Y9 848 aa10.04□□□□□ -0.8
VPS28-214ENST00000531032 ASIC5Q9NY37 505 aa10.04□□□□□ -0.8
VPS28-214ENST00000531032 NOP53Q9NZM5 478 aaKnown RBP10.04□□□□□ -0.8
VPS28-214ENST00000531032 COL6A5A8TX70 2615 aa10.04□□□□□ -0.8
VPS28-214ENST00000531032 IGKV3D-15A0A087WSY6 115 aa10.03□□□□□ -0.8
VPS28-214ENST00000531032 RNF103-CHMP3A0A140T963 221 aa10.03□□□□□ -0.8
VPS28-214ENST00000531032 WDR91A4D1P6 747 aa10.03□□□□□ -0.8
VPS28-214ENST00000531032 RNASET2O00584 256 aaKnown RBP10.03□□□□□ -0.8
VPS28-214ENST00000531032 KIAA0513O60268 411 aa10.03□□□□□ -0.8
VPS28-214ENST00000531032 RAMP1O60894 148 aa10.03□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 35.9 ms