RNA–Protein interactions for RNA: ENST00000527916.1

CPSF1-203, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 5

Gene CPSF1, Length 506 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-203ENST00000527916 PGS1Q32NB8 556 aa9.37□□□□□ -0.91
CPSF1-203ENST00000527916 ARHGAP11BQ3KRB8 267 aa9.37□□□□□ -0.91
CPSF1-203ENST00000527916 SLC25A53Q5H9E4 307 aa9.37□□□□□ -0.91
CPSF1-203ENST00000527916 ANXA8L1Q5VT79 327 aa9.37□□□□□ -0.91
CPSF1-203ENST00000527916 LIPNQ5VXI9 398 aa9.37□□□□□ -0.91
CPSF1-203ENST00000527916 OGFOD2Q6N063 350 aa9.37□□□□□ -0.91
CPSF1-203ENST00000527916 STAC2Q6ZMT1 411 aa9.37□□□□□ -0.91
CPSF1-203ENST00000527916 ZC3HAV1Q7Z2W4 902 aaKnown RBP9.37□□□□□ -0.91
CPSF1-203ENST00000527916 C6orf120Q7Z4R8 191 aa9.37□□□□□ -0.91
CPSF1-203ENST00000527916 STK32CQ86UX6 486 aa9.37□□□□□ -0.91
CPSF1-203ENST00000527916 LILRA2Q8N149 483 aa9.37□□□□□ -0.91
CPSF1-203ENST00000527916 TOR1AIP2Q8NFQ8 470 aa9.37□□□□□ -0.91
CPSF1-203ENST00000527916 OR6K3Q8NGY3 331 aa9.37□□□□□ -0.91
CPSF1-203ENST00000527916 PHOSPHO1Q8TCT1 267 aa9.37□□□□□ -0.91
CPSF1-203ENST00000527916 OTUB1Q96FW1 271 aaPredicted RBP9.37□□□□□ -0.91
CPSF1-203ENST00000527916 RNF145Q96MT1 663 aa9.37□□□□□ -0.91
CPSF1-203ENST00000527916 TNFRSF13CQ96RJ3 184 aa9.37□□□□□ -0.91
CPSF1-203ENST00000527916 NPAS1Q99742 590 aa9.37□□□□□ -0.91
CPSF1-203ENST00000527916 PRRG4Q9BZD6 226 aa9.37□□□□□ -0.91
CPSF1-203ENST00000527916 DPY30Q9C005 99 aa9.37□□□□□ -0.91
CPSF1-203ENST00000527916 ACTR6Q9GZN1 396 aa9.37□□□□□ -0.91
CPSF1-203ENST00000527916 OR10A4Q9H209 315 aa9.37□□□□□ -0.91
CPSF1-203ENST00000527916 ESRP2Q9H6T0 727 aaKnown RBP9.37□□□□□ -0.91
CPSF1-203ENST00000527916 MEAF6Q9HAF1 191 aa9.37□□□□□ -0.91
CPSF1-203ENST00000527916 KCNK9Q9NPC2 374 aa9.37□□□□□ -0.91
CPSF1-203ENST00000527916 MAGED1Q9Y5V3 778 aaPredicted RBP9.37□□□□□ -0.91
CPSF1-203ENST00000527916 GPC6Q9Y625 555 aaPredicted RBP9.37□□□□□ -0.91
CPSF1-203ENST00000527916 MEGF8Q7Z7M0 2845 aa9.37□□□□□ -0.91
CPSF1-203ENST00000527916 A0A0J9YW62 118 aa9.36□□□□□ -0.91
CPSF1-203ENST00000527916 GJE1A6NN92 205 aa9.36□□□□□ -0.91
CPSF1-203ENST00000527916 ESPNB1AK53 854 aa9.36□□□□□ -0.91
CPSF1-203ENST00000527916 GTPBP1O00178 669 aaKnown RBP9.36□□□□□ -0.91
CPSF1-203ENST00000527916 ANKRD28O15084 1053 aa9.36□□□□□ -0.91
CPSF1-203ENST00000527916 ZNF264O43296 627 aa9.36□□□□□ -0.91
CPSF1-203ENST00000527916 EFNA2O43921 213 aa9.36□□□□□ -0.91
CPSF1-203ENST00000527916 GPRIN2O60269 458 aa9.36□□□□□ -0.91
CPSF1-203ENST00000527916 STX11O75558 287 aa9.36□□□□□ -0.91
CPSF1-203ENST00000527916 SYNGR4O95473 234 aa9.36□□□□□ -0.91
CPSF1-203ENST00000527916 CD3EP07766 207 aa9.36□□□□□ -0.91
CPSF1-203ENST00000527916 DANCRP0C864 163 aa9.36□□□□□ -0.91
CPSF1-203ENST00000527916 PABPC4LP0CB38 370 aaKnown RBP9.36□□□□□ -0.91
CPSF1-203ENST00000527916 UQCRC2P22695 453 aa9.36□□□□□ -0.91
CPSF1-203ENST00000527916 SLC6A8P48029 635 aa9.36□□□□□ -0.91
CPSF1-203ENST00000527916 CLNS1AP54105 237 aaKnown RBP9.36□□□□□ -0.91
CPSF1-203ENST00000527916 CTBP2P56545 445 aa9.36□□□□□ -0.91
CPSF1-203ENST00000527916 CARD18P57730 90 aa9.36□□□□□ -0.91
CPSF1-203ENST00000527916 DSCR9P59020 149 aa9.36□□□□□ -0.91
CPSF1-203ENST00000527916 PHC1P78364 1004 aa9.36□□□□□ -0.91
CPSF1-203ENST00000527916 VLDLRP98155 873 aa9.36□□□□□ -0.91
CPSF1-203ENST00000527916 ZNF117Q03924 483 aa9.36□□□□□ -0.91
CPSF1-203ENST00000527916 FAPQ12884 760 aa9.36□□□□□ -0.91
CPSF1-203ENST00000527916 CASP8Q14790 479 aa9.36□□□□□ -0.91
CPSF1-203ENST00000527916 ZNF141Q15928 474 aa9.36□□□□□ -0.91
CPSF1-203ENST00000527916 NRF1Q16656 503 aa9.36□□□□□ -0.91
CPSF1-203ENST00000527916 DDX59Q5T1V6 619 aaKnown RBP eCLIP9.36□□□□□ -0.91
CPSF1-203ENST00000527916 HBMQ6B0K9 141 aa9.36□□□□□ -0.91
CPSF1-203ENST00000527916 OR4F3Q6IEY1 312 aa9.36□□□□□ -0.91
CPSF1-203ENST00000527916 ALKBH2Q6NS38 261 aa9.36□□□□□ -0.91
CPSF1-203ENST00000527916 CBLN3Q6UW01 205 aa9.36□□□□□ -0.91
CPSF1-203ENST00000527916 BEND4Q6ZU67 534 aa9.36□□□□□ -0.91
CPSF1-203ENST00000527916 CLECL1Q8IZS7 167 aa9.36□□□□□ -0.91
CPSF1-203ENST00000527916 OR5AK3PQ8NH89 298 aa9.36□□□□□ -0.91
CPSF1-203ENST00000527916 OR2V1Q8NHB1 315 aa9.36□□□□□ -0.91
CPSF1-203ENST00000527916 GPR119Q8TDV5 335 aa9.36□□□□□ -0.91
CPSF1-203ENST00000527916 OSTF1Q92882 214 aa9.36□□□□□ -0.91
CPSF1-203ENST00000527916 CPNE4Q96A23 557 aaPredicted RBP9.36□□□□□ -0.91
CPSF1-203ENST00000527916 SH3YL1Q96HL8 342 aaPredicted RBP9.36□□□□□ -0.91
CPSF1-203ENST00000527916 MRGPRX4Q96LA9 322 aa9.36□□□□□ -0.91
CPSF1-203ENST00000527916 KLHL15Q96M94 604 aa9.36□□□□□ -0.91
CPSF1-203ENST00000527916 KLHDC3Q9BQ90 382 aa9.36□□□□□ -0.91
CPSF1-203ENST00000527916 CENPHQ9H3R5 247 aa9.36□□□□□ -0.91
CPSF1-203ENST00000527916 GP6Q9HCN6 339 aa9.36□□□□□ -0.91
CPSF1-203ENST00000527916 TIGARQ9NQ88 270 aa9.36□□□□□ -0.91
CPSF1-203ENST00000527916 POLE3Q9NRF9 147 aa9.36□□□□□ -0.91
CPSF1-203ENST00000527916 EXD2Q9NVH0 621 aa9.36□□□□□ -0.91
CPSF1-203ENST00000527916 FAIMQ9NVQ4 179 aa9.36□□□□□ -0.91
CPSF1-203ENST00000527916 CARD8Q9Y2G2 431 aa9.36□□□□□ -0.91
CPSF1-203ENST00000527916 GPR52Q9Y2T5 361 aa9.36□□□□□ -0.91
CPSF1-203ENST00000527916 RNF103-CHMP3A0A140T963 221 aa9.35□□□□□ -0.91
CPSF1-203ENST00000527916 FAM234BA2RU67 622 aa9.35□□□□□ -0.91
CPSF1-203ENST00000527916 SLCO1B7G3V0H7 640 aa9.35□□□□□ -0.91
CPSF1-203ENST00000527916 ZNF195O14628 629 aa9.35□□□□□ -0.91
CPSF1-203ENST00000527916 TNFSF11O14788 317 aa9.35□□□□□ -0.91
CPSF1-203ENST00000527916 SPRY1O43609 319 aaPredicted RBP9.35□□□□□ -0.91
CPSF1-203ENST00000527916 CXCL13O43927 109 aa9.35□□□□□ -0.91
CPSF1-203ENST00000527916 SSX4O60224 188 aa9.35□□□□□ -0.91
CPSF1-203ENST00000527916 NTN1O95631 604 aa9.35□□□□□ -0.91
CPSF1-203ENST00000527916 THBS1P07996 1170 aa9.35□□□□□ -0.91
CPSF1-203ENST00000527916 PRKCAP17252 672 aa9.35□□□□□ -0.91
CPSF1-203ENST00000527916 BGNP21810 368 aa9.35□□□□□ -0.91
CPSF1-203ENST00000527916 SOAT1P35610 550 aa9.35□□□□□ -0.91
CPSF1-203ENST00000527916 LRRC74AQ0VAA2 488 aa9.35□□□□□ -0.91
CPSF1-203ENST00000527916 BST1Q10588 318 aa9.35□□□□□ -0.91
CPSF1-203ENST00000527916 MALRD1Q5VYJ5 2156 aa9.35□□□□□ -0.91
CPSF1-203ENST00000527916 CYB5R2Q6BCY4 276 aa9.35□□□□□ -0.91
CPSF1-203ENST00000527916 CLEC2AQ6UVW9 174 aa9.35□□□□□ -0.91
CPSF1-203ENST00000527916 SPATA19Q7Z5L4 167 aa9.35□□□□□ -0.91
CPSF1-203ENST00000527916 STEAP2Q8NFT2 490 aa9.35□□□□□ -0.91
CPSF1-203ENST00000527916 OR5D16Q8NGK9 328 aa9.35□□□□□ -0.91
CPSF1-203ENST00000527916 OR4A15Q8NGL6 344 aa9.35□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms