RNA–Protein interactions for RNA: ENST00000526204.5

VPS28-205, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,120 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-205ENST00000526204 TCEA1P23193 301 aaKnown RBP19.61■□□□□ 0.73
VPS28-205ENST00000526204 GAS6Q14393 721 aa19.61■□□□□ 0.73
VPS28-205ENST00000526204 TATDN3Q17R31 274 aa19.61■□□□□ 0.73
VPS28-205ENST00000526204 ARHGAP11AQ6P4F7 1023 aa19.61■□□□□ 0.73
VPS28-205ENST00000526204 VASH1Q7L8A9 365 aaPredicted RBP19.61■□□□□ 0.73
VPS28-205ENST00000526204 NR2C2APQ86WQ0 139 aa19.61■□□□□ 0.73
VPS28-205ENST00000526204 LSMEM1Q8N8F7 131 aa19.61■□□□□ 0.73
VPS28-205ENST00000526204 LRFN5Q96NI6 719 aa19.61■□□□□ 0.73
VPS28-205ENST00000526204 LMF2Q9BU23 707 aaKnown RBP19.61■□□□□ 0.73
VPS28-205ENST00000526204 NKX2-4Q9H2Z4 354 aa19.61■□□□□ 0.73
VPS28-205ENST00000526204 RANGRFQ9HD47 186 aaPredicted RBP19.61■□□□□ 0.73
VPS28-205ENST00000526204 TRPV5Q9NQA5 729 aa19.61■□□□□ 0.73
VPS28-205ENST00000526204 FLRT3Q9NZU0 649 aa19.61■□□□□ 0.73
VPS28-205ENST00000526204 DVL2O14641 736 aa19.6■□□□□ 0.73
VPS28-205ENST00000526204 RFPL3O75679 317 aa19.6■□□□□ 0.73
VPS28-205ENST00000526204 CSTF1Q05048 431 aaKnown RBP19.6■□□□□ 0.73
VPS28-205ENST00000526204 CRMP1Q14194 572 aa19.6■□□□□ 0.73
VPS28-205ENST00000526204 ZAR1Q86SH2 424 aa19.6■□□□□ 0.73
VPS28-205ENST00000526204 NOXA1Q86UR1 476 aa19.6■□□□□ 0.73
VPS28-205ENST00000526204 SHISA5Q8N114 240 aa19.6■□□□□ 0.73
VPS28-205ENST00000526204 NLGN4YQ8NFZ3 816 aaPredicted RBP19.6■□□□□ 0.73
VPS28-205ENST00000526204 ABHD4Q8TB40 342 aa19.6■□□□□ 0.73
VPS28-205ENST00000526204 SMPDL3BQ92485 455 aa19.6■□□□□ 0.73
VPS28-205ENST00000526204 KLHL21Q9UJP4 597 aa19.6■□□□□ 0.73
VPS28-205ENST00000526204 PPP1R3DO95685 299 aa19.6■□□□□ 0.73
VPS28-205ENST00000526204 IL9P15248 144 aa19.6■□□□□ 0.73
VPS28-205ENST00000526204 ALAS2P22557 587 aa19.6■□□□□ 0.73
VPS28-205ENST00000526204 SHC1P29353 583 aa19.6■□□□□ 0.73
VPS28-205ENST00000526204 ACAA2P42765 397 aaKnown RBP19.6■□□□□ 0.73
VPS28-205ENST00000526204 SLC44A3Q8N4M1 653 aa19.6■□□□□ 0.73
VPS28-205ENST00000526204 MS4A15Q8N5U1 240 aa19.6■□□□□ 0.73
VPS28-205ENST00000526204 ZNF614Q8N883 585 aa19.6■□□□□ 0.73
VPS28-205ENST00000526204 ASCC1Q8N9N2 400 aaKnown RBP19.6■□□□□ 0.73
VPS28-205ENST00000526204 C4orf36Q96KX1 117 aa19.6■□□□□ 0.73
VPS28-205ENST00000526204 TTYH2Q9BSA4 534 aa19.6■□□□□ 0.73
VPS28-205ENST00000526204 MARVELD1Q9BSK0 173 aa19.6■□□□□ 0.73
VPS28-205ENST00000526204 ERVMER34-1Q9H9K5 563 aa19.6■□□□□ 0.73
VPS28-205ENST00000526204 ST6GALNAC1Q9NSC7 600 aaPredicted RBP19.6■□□□□ 0.73
VPS28-205ENST00000526204 DNAJB12Q9NXW2 375 aaKnown RBP19.6■□□□□ 0.73
VPS28-205ENST00000526204 USP36Q9P275 1121 aaKnown RBP19.6■□□□□ 0.73
VPS28-205ENST00000526204 TICRRQ7Z2Z1 1910 aa19.59■□□□□ 0.73
VPS28-205ENST00000526204 E9PI62 339 aa19.59■□□□□ 0.73
VPS28-205ENST00000526204 J3QLW9 94 aa19.59■□□□□ 0.73
VPS28-205ENST00000526204 MRPL3P09001 348 aaKnown RBP19.59■□□□□ 0.73
VPS28-205ENST00000526204 ZNF19P17023 458 aa19.59■□□□□ 0.73
VPS28-205ENST00000526204 RFX3P48380 749 aa19.59■□□□□ 0.73
VPS28-205ENST00000526204 CLDN20P56880 219 aa19.59■□□□□ 0.73
VPS28-205ENST00000526204 PSG6Q00889 435 aa19.59■□□□□ 0.73
VPS28-205ENST00000526204 HTR4Q13639 388 aa19.59■□□□□ 0.73
VPS28-205ENST00000526204 ALG10BQ5I7T1 473 aa19.59■□□□□ 0.73
VPS28-205ENST00000526204 TIGD3Q6B0B8 471 aa19.59■□□□□ 0.73
VPS28-205ENST00000526204 CEACAM19Q7Z692 300 aa19.59■□□□□ 0.73
VPS28-205ENST00000526204 PXKQ7Z7A4 578 aa19.59■□□□□ 0.73
VPS28-205ENST00000526204 TCTE3Q8IZS6 198 aa19.59■□□□□ 0.73
VPS28-205ENST00000526204 OR13H1Q8NG92 308 aa19.59■□□□□ 0.73
VPS28-205ENST00000526204 SLC37A2Q8TED4 501 aa19.59■□□□□ 0.73
VPS28-205ENST00000526204 TNFRSF13CQ96RJ3 184 aa19.59■□□□□ 0.73
VPS28-205ENST00000526204 CAPN10Q9HC96 672 aa19.59■□□□□ 0.73
VPS28-205ENST00000526204 NLKQ9UBE8 527 aa19.59■□□□□ 0.73
VPS28-205ENST00000526204 ZMIZ1Q9ULJ6 1067 aa19.59■□□□□ 0.73
VPS28-205ENST00000526204 NOX1Q9Y5S8 564 aa19.59■□□□□ 0.73
VPS28-205ENST00000526204 ORC5O43913 435 aa19.58■□□□□ 0.73
VPS28-205ENST00000526204 SLC43A1O75387 559 aa19.58■□□□□ 0.73
VPS28-205ENST00000526204 RDH16O75452 317 aa19.58■□□□□ 0.73
VPS28-205ENST00000526204 RBMS1P29558 406 aaKnown RBP19.58■□□□□ 0.73
VPS28-205ENST00000526204 NRG3P56975 720 aa19.58■□□□□ 0.73
VPS28-205ENST00000526204 ZNF85Q03923 595 aa19.58■□□□□ 0.73
VPS28-205ENST00000526204 FCRLBQ6BAA4 426 aa19.58■□□□□ 0.73
VPS28-205ENST00000526204 TMEM92Q6UXU6 159 aa19.58■□□□□ 0.73
VPS28-205ENST00000526204 ZNF550Q7Z398 422 aa19.58■□□□□ 0.73
VPS28-205ENST00000526204 ABI3BPQ7Z7G0 1075 aa19.58■□□□□ 0.73
VPS28-205ENST00000526204 TEX19Q8NA77 164 aa19.58■□□□□ 0.73
VPS28-205ENST00000526204 RNF170Q96K19 258 aa19.58■□□□□ 0.73
VPS28-205ENST00000526204 GDF15Q99988 308 aa19.58■□□□□ 0.73
VPS28-205ENST00000526204 FOLH1BQ9HBA9 442 aa19.58■□□□□ 0.73
VPS28-205ENST00000526204 MCCC2Q9HCC0 563 aa19.58■□□□□ 0.73
VPS28-205ENST00000526204 STARD5Q9NSY2 213 aa19.58■□□□□ 0.73
VPS28-205ENST00000526204 CLEC1BQ9P126 229 aa19.58■□□□□ 0.73
VPS28-205ENST00000526204 SERTAD3Q9UJW9 196 aa19.58■□□□□ 0.73
VPS28-205ENST00000526204 PIAS3Q9Y6X2 628 aa19.58■□□□□ 0.73
VPS28-205ENST00000526204 OR5K3A6NET4 321 aa19.58■□□□□ 0.72
VPS28-205ENST00000526204 SC5DO75845 299 aa19.58■□□□□ 0.72
VPS28-205ENST00000526204 S1PR1P21453 382 aa19.58■□□□□ 0.72
VPS28-205ENST00000526204 E2F1Q01094 437 aa19.58■□□□□ 0.72
VPS28-205ENST00000526204 SLC3A1Q07837 685 aa19.58■□□□□ 0.72
VPS28-205ENST00000526204 ZNF57Q68EA5 555 aaPredicted RBP19.58■□□□□ 0.72
VPS28-205ENST00000526204 ARMC6Q6NXE6 501 aa19.58■□□□□ 0.72
VPS28-205ENST00000526204 SFXN4Q6P4A7 337 aa19.58■□□□□ 0.72
VPS28-205ENST00000526204 ULK3Q6PHR2 472 aa19.58■□□□□ 0.72
VPS28-205ENST00000526204 DGAT2L6Q6ZPD8 337 aa19.58■□□□□ 0.72
VPS28-205ENST00000526204 CYB561A3Q8NBI2 242 aa19.58■□□□□ 0.72
VPS28-205ENST00000526204 PTCHD1Q96NR3 888 aa19.58■□□□□ 0.72
VPS28-205ENST00000526204 FYTTD1Q96QD9 318 aaKnown RBP19.58■□□□□ 0.72
VPS28-205ENST00000526204 PPIL3Q9H2H8 161 aaKnown RBP19.58■□□□□ 0.72
VPS28-205ENST00000526204 SEMA6CQ9H3T2 930 aa19.58■□□□□ 0.72
VPS28-205ENST00000526204 ENAMQ9NRM1 1142 aa19.58■□□□□ 0.72
VPS28-205ENST00000526204 A0A0G2JMP0 313 aa19.57■□□□□ 0.72
VPS28-205ENST00000526204 A0A0X1KG70 313 aa19.57■□□□□ 0.72
VPS28-205ENST00000526204 SYNDIG1LA6NDD5 238 aa19.57■□□□□ 0.72
VPS28-205ENST00000526204 PRAMEF26H0Y7S4 382 aa19.57■□□□□ 0.72
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms