RNA–Protein interactions for RNA: ENST00000514665.1

USP53-209, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 1 (best)

Gene USP53, Length 4,233 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-209ENST00000514665 PVALBP20472 110 aaPredicted RBP11.83□□□□□ -0.52
USP53-209ENST00000514665 IRS1P35568 1242 aa11.83□□□□□ -0.52
USP53-209ENST00000514665 LBX1P52954 281 aa11.83□□□□□ -0.52
USP53-209ENST00000514665 PLK5Q496M5 336 aa11.83□□□□□ -0.52
USP53-209ENST00000514665 ZNF385BQ569K4 471 aa11.83□□□□□ -0.52
USP53-209ENST00000514665 PRAMEF8Q5VWM4 474 aa11.83□□□□□ -0.52
USP53-209ENST00000514665 PRAMEF7Q5VXH5 474 aa11.83□□□□□ -0.52
USP53-209ENST00000514665 OR4M2Q8NGB6 313 aa11.83□□□□□ -0.52
USP53-209ENST00000514665 TOE1Q96GM8 510 aaKnown RBP11.83□□□□□ -0.52
USP53-209ENST00000514665 ZBP1Q9H171 429 aa11.83□□□□□ -0.52
USP53-209ENST00000514665 PRDM9Q9NQV7 894 aa11.83□□□□□ -0.52
USP53-209ENST00000514665 ASIC5Q9NY37 505 aa11.83□□□□□ -0.52
USP53-209ENST00000514665 ADAM29Q9UKF5 820 aa11.83□□□□□ -0.52
USP53-209ENST00000514665 ASB4Q9Y574 426 aa11.83□□□□□ -0.52
USP53-209ENST00000514665 V9GY05 133 aa11.83□□□□□ -0.52
USP53-209ENST00000514665 CHP2O43745 196 aa11.83□□□□□ -0.52
USP53-209ENST00000514665 SPDEFO95238 335 aa11.83□□□□□ -0.52
USP53-209ENST00000514665 FARS2O95363 451 aaKnown RBP11.83□□□□□ -0.52
USP53-209ENST00000514665 MPIG6BO95866 241 aa11.83□□□□□ -0.52
USP53-209ENST00000514665 UBL4AP11441 157 aa11.83□□□□□ -0.52
USP53-209ENST00000514665 RPS19P39019 145 aaKnown RBP11.83□□□□□ -0.52
USP53-209ENST00000514665 OR1D4P47884 311 aa11.83□□□□□ -0.52
USP53-209ENST00000514665 SLC6A12P48065 614 aa11.83□□□□□ -0.52
USP53-209ENST00000514665 CTBP2P56545 445 aa11.83□□□□□ -0.52
USP53-209ENST00000514665 MAT1AQ00266 395 aaKnown RBP11.83□□□□□ -0.52
USP53-209ENST00000514665 AGAP7PQ5VUJ5 663 aa11.83□□□□□ -0.52
USP53-209ENST00000514665 GARNL3Q5VVW2 1013 aa11.83□□□□□ -0.52
USP53-209ENST00000514665 FCRLAQ7L513 359 aa11.83□□□□□ -0.52
USP53-209ENST00000514665 LRRC28Q86X40 367 aaPredicted RBP11.83□□□□□ -0.52
USP53-209ENST00000514665 LYSMD2Q8IV50 215 aa11.83□□□□□ -0.52
USP53-209ENST00000514665 PCNPQ8WW12 178 aaKnown RBP11.83□□□□□ -0.52
USP53-209ENST00000514665 GHSRQ92847 366 aa11.83□□□□□ -0.52
USP53-209ENST00000514665 SLC6A17Q9H1V8 727 aa11.83□□□□□ -0.52
USP53-209ENST00000514665 DUSP21Q9H596 190 aa11.83□□□□□ -0.52
USP53-209ENST00000514665 ACER3Q9NUN7 267 aa11.83□□□□□ -0.52
USP53-209ENST00000514665 KLF15Q9UIH9 416 aa11.83□□□□□ -0.52
USP53-209ENST00000514665 KCNIP3Q9Y2W7 256 aa11.83□□□□□ -0.52
USP53-209ENST00000514665 CORINQ9Y5Q5 1042 aa11.83□□□□□ -0.52
USP53-209ENST00000514665 ZNF705EA8MWA4 302 aaPredicted RBP11.83□□□□□ -0.52
USP53-209ENST00000514665 CENPBD1B2RD01 187 aa11.83□□□□□ -0.52
USP53-209ENST00000514665 CSO75390 466 aaKnown RBP11.83□□□□□ -0.52
USP53-209ENST00000514665 ETHE1O95571 254 aa11.83□□□□□ -0.52
USP53-209ENST00000514665 GABRA5P31644 462 aa11.83□□□□□ -0.52
USP53-209ENST00000514665 OR7E24Q6IFN5 339 aa11.83□□□□□ -0.52
USP53-209ENST00000514665 CADM3Q8N126 398 aa11.83□□□□□ -0.52
USP53-209ENST00000514665 SYNPRQ8TBG9 265 aa11.83□□□□□ -0.52
USP53-209ENST00000514665 TMEM255BQ8WV15 326 aa11.83□□□□□ -0.52
USP53-209ENST00000514665 ZNF419Q96HQ0 510 aaPredicted RBP11.83□□□□□ -0.52
USP53-209ENST00000514665 KATNB1Q9BVA0 655 aa11.83□□□□□ -0.52
USP53-209ENST00000514665 TAAR2Q9P1P5 351 aa11.83□□□□□ -0.52
USP53-209ENST00000514665 NDRG4Q9ULP0 352 aaKnown RBP11.83□□□□□ -0.52
USP53-209ENST00000514665 IL33O95760 270 aa11.82□□□□□ -0.52
USP53-209ENST00000514665 PNMTP11086 282 aa11.82□□□□□ -0.52
USP53-209ENST00000514665 SLC2A5P22732 501 aa11.82□□□□□ -0.52
USP53-209ENST00000514665 PTPN6P29350 595 aa11.82□□□□□ -0.52
USP53-209ENST00000514665 SLX4IPQ5VYV7 408 aa11.82□□□□□ -0.52
USP53-209ENST00000514665 ABHD17CQ6PCB6 329 aa11.82□□□□□ -0.52
USP53-209ENST00000514665 HAGHLQ6PII5 290 aaPredicted RBP11.82□□□□□ -0.52
USP53-209ENST00000514665 TMEM64Q6YI46 380 aa11.82□□□□□ -0.52
USP53-209ENST00000514665 PDZD9Q8IXQ8 264 aa11.82□□□□□ -0.52
USP53-209ENST00000514665 INTS14Q96SY0 518 aa11.82□□□□□ -0.52
USP53-209ENST00000514665 BTBD2Q9BX70 525 aa11.82□□□□□ -0.52
USP53-209ENST00000514665 B3GAT2Q9NPZ5 323 aa11.82□□□□□ -0.52
USP53-209ENST00000514665 SCML1Q9UN30 329 aa11.82□□□□□ -0.52
USP53-209ENST00000514665 PRAMEF26H0Y7S4 382 aa11.82□□□□□ -0.52
USP53-209ENST00000514665 H7C1C5 153 aa11.82□□□□□ -0.52
USP53-209ENST00000514665 GOSR2O14653 212 aa11.82□□□□□ -0.52
USP53-209ENST00000514665 SYT7O43581 403 aa11.82□□□□□ -0.52
USP53-209ENST00000514665 KLK8O60259 260 aa11.82□□□□□ -0.52
USP53-209ENST00000514665 ERCC1P07992 297 aaPredicted RBP11.82□□□□□ -0.52
USP53-209ENST00000514665 TRIM23P36406 574 aa11.82□□□□□ -0.52
USP53-209ENST00000514665 AQP2P41181 271 aa11.82□□□□□ -0.52
USP53-209ENST00000514665 LCN6P62502 163 aa11.82□□□□□ -0.52
USP53-209ENST00000514665 C3orf38Q5JPI3 329 aa11.82□□□□□ -0.52
USP53-209ENST00000514665 METTL11BQ5VVY1 283 aa11.82□□□□□ -0.52
USP53-209ENST00000514665 PAQR6Q6TCH4 344 aa11.82□□□□□ -0.52
USP53-209ENST00000514665 CD300LFQ8TDQ1 290 aa11.82□□□□□ -0.52
USP53-209ENST00000514665 DUS3LQ96G46 650 aaKnown RBP11.82□□□□□ -0.52
USP53-209ENST00000514665 NEDD4LQ96PU5 975 aa11.82□□□□□ -0.52
USP53-209ENST00000514665 HHIPQ96QV1 700 aa11.82□□□□□ -0.52
USP53-209ENST00000514665 SLC5A7Q9GZV3 580 aa11.82□□□□□ -0.52
USP53-209ENST00000514665 KCNN3Q9UGI6 736 aa11.82□□□□□ -0.52
USP53-209ENST00000514665 OSGIN1Q9UJX0 560 aa11.82□□□□□ -0.52
USP53-209ENST00000514665 ZNF225Q9UK10 706 aa11.82□□□□□ -0.52
USP53-209ENST00000514665 ATG2BQ96BY7 2078 aa11.82□□□□□ -0.52
USP53-209ENST00000514665 COL4A1P02462 1669 aa11.82□□□□□ -0.52
USP53-209ENST00000514665 TRIP11Q15643 1979 aa11.82□□□□□ -0.52
USP53-209ENST00000514665 TMEM72A0PK05 275 aa11.82□□□□□ -0.52
USP53-209ENST00000514665 ACOT7O00154 380 aa11.82□□□□□ -0.52
USP53-209ENST00000514665 NUPL2O15504 423 aaKnown RBP11.82□□□□□ -0.52
USP53-209ENST00000514665 MAKP20794 623 aa11.82□□□□□ -0.52
USP53-209ENST00000514665 CD34P28906 385 aa11.82□□□□□ -0.52
USP53-209ENST00000514665 PDX1P52945 283 aa11.82□□□□□ -0.52
USP53-209ENST00000514665 PDE7AQ13946 482 aa11.82□□□□□ -0.52
USP53-209ENST00000514665 CBFBQ13951 182 aa11.82□□□□□ -0.52
USP53-209ENST00000514665 EIF2B1Q14232 305 aaKnown RBP11.82□□□□□ -0.52
USP53-209ENST00000514665 KIAA1211LQ6NV74 962 aa11.82□□□□□ -0.52
USP53-209ENST00000514665 FAM198BQ6UWH4 519 aa11.82□□□□□ -0.52
USP53-209ENST00000514665 NLGN4YQ8NFZ3 816 aaPredicted RBP11.82□□□□□ -0.52
USP53-209ENST00000514665 OR52I1Q8NGK6 324 aa11.82□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 42.6 ms