RNA–Protein interactions for RNA: ENST00000514096.5

LIMCH1-219, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 3,543 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-219ENST00000514096 RPS19BP1Q86WX3 136 aaKnown RBP7.29□□□□□ -1.24
LIMCH1-219ENST00000514096 FNDC5Q8NAU1 212 aa7.29□□□□□ -1.24
LIMCH1-219ENST00000514096 SNRNP40Q96DI7 357 aaKnown RBP7.29□□□□□ -1.24
LIMCH1-219ENST00000514096 LMF1Q96S06 567 aa7.29□□□□□ -1.24
LIMCH1-219ENST00000514096 UBL7Q96S82 380 aaPredicted RBP7.29□□□□□ -1.24
LIMCH1-219ENST00000514096 ROGDIQ9GZN7 287 aa7.29□□□□□ -1.24
LIMCH1-219ENST00000514096 CLEC4MQ9H2X3 399 aaPredicted RBP7.29□□□□□ -1.24
LIMCH1-219ENST00000514096 ZNF552Q9H707 407 aaPredicted RBP7.29□□□□□ -1.24
LIMCH1-219ENST00000514096 ITPR2Q14571 2701 aa7.29□□□□□ -1.24
LIMCH1-219ENST00000514096 PTGES3LE9PB15 166 aa7.29□□□□□ -1.24
LIMCH1-219ENST00000514096 PCDH7O60245 1069 aa7.29□□□□□ -1.24
LIMCH1-219ENST00000514096 MED6O75586 246 aa7.29□□□□□ -1.24
LIMCH1-219ENST00000514096 CRTAPO75718 401 aaPredicted RBP7.29□□□□□ -1.24
LIMCH1-219ENST00000514096 NSA2O95478 260 aaKnown RBP7.29□□□□□ -1.24
LIMCH1-219ENST00000514096 TPOP07202 933 aa7.29□□□□□ -1.24
LIMCH1-219ENST00000514096 SPNP16150 400 aa7.29□□□□□ -1.24
LIMCH1-219ENST00000514096 CD36P16671 472 aa7.29□□□□□ -1.24
LIMCH1-219ENST00000514096 SLC6A12P48065 614 aa7.29□□□□□ -1.24
LIMCH1-219ENST00000514096 DNASE1L1P49184 302 aa7.29□□□□□ -1.24
LIMCH1-219ENST00000514096 REEP5Q00765 189 aa7.29□□□□□ -1.24
LIMCH1-219ENST00000514096 TRAM1Q15629 374 aa7.29□□□□□ -1.24
LIMCH1-219ENST00000514096 DUSP7Q16829 419 aa7.29□□□□□ -1.24
LIMCH1-219ENST00000514096 SPDYE7PQ495Y7 208 aa7.29□□□□□ -1.24
LIMCH1-219ENST00000514096 HSD17B12Q53GQ0 312 aa7.29□□□□□ -1.24
LIMCH1-219ENST00000514096 ZBTB49Q6ZSB9 765 aa7.29□□□□□ -1.24
LIMCH1-219ENST00000514096 PNPLA5Q7Z6Z6 429 aaPredicted RBP7.29□□□□□ -1.24
LIMCH1-219ENST00000514096 CA13Q8N1Q1 262 aa7.29□□□□□ -1.24
LIMCH1-219ENST00000514096 CMTM7Q96FZ5 175 aa7.29□□□□□ -1.24
LIMCH1-219ENST00000514096 NEDD4LQ96PU5 975 aa7.29□□□□□ -1.24
LIMCH1-219ENST00000514096 SNX18Q96RF0 628 aa7.29□□□□□ -1.24
LIMCH1-219ENST00000514096 PARD6GQ9BYG4 376 aaPredicted RBP7.29□□□□□ -1.24
LIMCH1-219ENST00000514096 WDR55Q9H6Y2 383 aaPredicted RBP7.29□□□□□ -1.24
LIMCH1-219ENST00000514096 KAT8Q9H7Z6 458 aaKnown RBP7.29□□□□□ -1.24
LIMCH1-219ENST00000514096 DDX31Q9H8H2 851 aaKnown RBP7.29□□□□□ -1.24
LIMCH1-219ENST00000514096 RASSF1Q9NS23 344 aa7.29□□□□□ -1.24
LIMCH1-219ENST00000514096 PNPOQ9NVS9 261 aa7.29□□□□□ -1.24
LIMCH1-219ENST00000514096 UTS2RQ9UKP6 389 aa7.29□□□□□ -1.24
LIMCH1-219ENST00000514096 G3V2T6 193 aa7.28□□□□□ -1.24
LIMCH1-219ENST00000514096 REM1O75628 298 aa7.28□□□□□ -1.24
LIMCH1-219ENST00000514096 SERPINA6P08185 405 aa7.28□□□□□ -1.24
LIMCH1-219ENST00000514096 SBK3P0C264 359 aa7.28□□□□□ -1.24
LIMCH1-219ENST00000514096 CAPN3P20807 821 aa7.28□□□□□ -1.24
LIMCH1-219ENST00000514096 PTNP21246 168 aa7.28□□□□□ -1.24
LIMCH1-219ENST00000514096 TACR1P25103 407 aa7.28□□□□□ -1.24
LIMCH1-219ENST00000514096 AZGP1P25311 298 aaKnown RBP7.28□□□□□ -1.24
LIMCH1-219ENST00000514096 TAGLN2P37802 199 aaKnown RBP7.28□□□□□ -1.24
LIMCH1-219ENST00000514096 MAP2K6P52564 334 aa7.28□□□□□ -1.24
LIMCH1-219ENST00000514096 PKNOX1P55347 436 aa7.28□□□□□ -1.24
LIMCH1-219ENST00000514096 SOX8P57073 446 aa7.28□□□□□ -1.24
LIMCH1-219ENST00000514096 PMS2P3Q13401 168 aa7.28□□□□□ -1.24
LIMCH1-219ENST00000514096 TP53BP2Q13625 1128 aa7.28□□□□□ -1.24
LIMCH1-219ENST00000514096 SMCO1Q147U7 214 aa7.28□□□□□ -1.24
LIMCH1-219ENST00000514096 PTGR1Q14914 329 aa7.28□□□□□ -1.24
LIMCH1-219ENST00000514096 ZNF678Q5SXM1 525 aa7.28□□□□□ -1.24
LIMCH1-219ENST00000514096 GTF2IRD2BQ6EKJ0 949 aa7.28□□□□□ -1.24
LIMCH1-219ENST00000514096 CGB2Q6NT52 195 aa7.28□□□□□ -1.24
LIMCH1-219ENST00000514096 ZNF572Q7Z3I7 529 aaPredicted RBP7.28□□□□□ -1.24
LIMCH1-219ENST00000514096 GTF2IRD2Q86UP8 949 aa7.28□□□□□ -1.24
LIMCH1-219ENST00000514096 TMEM132CQ8N3T6 1108 aa7.28□□□□□ -1.24
LIMCH1-219ENST00000514096 FBXW8Q8N3Y1 598 aa7.28□□□□□ -1.24
LIMCH1-219ENST00000514096 THAP4Q8WY91 577 aa7.28□□□□□ -1.24
LIMCH1-219ENST00000514096 OSBPL11Q9BXB4 747 aa7.28□□□□□ -1.24
LIMCH1-219ENST00000514096 GON7Q9BXV9 100 aa7.28□□□□□ -1.24
LIMCH1-219ENST00000514096 LDAHQ9H6V9 325 aa7.28□□□□□ -1.24
LIMCH1-219ENST00000514096 DMRT3Q9NQL9 472 aa7.28□□□□□ -1.24
LIMCH1-219ENST00000514096 RIC8BQ9NVN3 520 aa7.28□□□□□ -1.24
LIMCH1-219ENST00000514096 COPG2Q9UBF2 871 aa7.28□□□□□ -1.24
LIMCH1-219ENST00000514096 DNAJB9Q9UBS3 223 aa7.28□□□□□ -1.24
LIMCH1-219ENST00000514096 COPS7AQ9UBW8 275 aa7.28□□□□□ -1.24
LIMCH1-219ENST00000514096 A0A1W2PR48 441 aa7.28□□□□□ -1.24
LIMCH1-219ENST00000514096 LEUTXA8MZ59 168 aa7.28□□□□□ -1.24
LIMCH1-219ENST00000514096 NPIPA2E9PIF3 369 aa7.28□□□□□ -1.24
LIMCH1-219ENST00000514096 NPIPA3F8WFD2 350 aa7.28□□□□□ -1.24
LIMCH1-219ENST00000514096 SMLR1H3BR10 107 aa7.28□□□□□ -1.24
LIMCH1-219ENST00000514096 UBFD1O14562 309 aaKnown RBP7.28□□□□□ -1.24
LIMCH1-219ENST00000514096 PIP5K1BO14986 540 aa7.28□□□□□ -1.24
LIMCH1-219ENST00000514096 TRIM13O60858 407 aa7.28□□□□□ -1.24
LIMCH1-219ENST00000514096 C1QL1O75973 258 aa7.28□□□□□ -1.24
LIMCH1-219ENST00000514096 AIFM1O95831 613 aa7.28□□□□□ -1.24
LIMCH1-219ENST00000514096 TXNDC12O95881 172 aa7.28□□□□□ -1.24
LIMCH1-219ENST00000514096 NR2F6P10588 404 aa7.28□□□□□ -1.24
LIMCH1-219ENST00000514096 IL7P13232 177 aa7.28□□□□□ -1.24
LIMCH1-219ENST00000514096 CPMP14384 443 aa7.28□□□□□ -1.24
LIMCH1-219ENST00000514096 TNFRSF8P28908 595 aa7.28□□□□□ -1.24
LIMCH1-219ENST00000514096 SLC7A2P52569 658 aa7.28□□□□□ -1.24
LIMCH1-219ENST00000514096 C3AR1Q16581 482 aa7.28□□□□□ -1.24
LIMCH1-219ENST00000514096 ZNF800Q2TB10 664 aaPredicted RBP eCLIP7.28□□□□□ -1.24
LIMCH1-219ENST00000514096 ACER2Q5QJU3 275 aa7.28□□□□□ -1.24
LIMCH1-219ENST00000514096 ATG9BQ674R7 924 aa7.28□□□□□ -1.24
LIMCH1-219ENST00000514096 LRRC70Q7Z2Q7 622 aa7.28□□□□□ -1.24
LIMCH1-219ENST00000514096 ANKRD37Q7Z713 158 aa7.28□□□□□ -1.24
LIMCH1-219ENST00000514096 NOXA1Q86UR1 476 aa7.28□□□□□ -1.24
LIMCH1-219ENST00000514096 OR7A2PQ8NGA2 310 aa7.28□□□□□ -1.24
LIMCH1-219ENST00000514096 PROKR1Q8TCW9 393 aa7.28□□□□□ -1.24
LIMCH1-219ENST00000514096 TMEM125Q96AQ2 219 aa7.28□□□□□ -1.24
LIMCH1-219ENST00000514096 TMEM80Q96HE8 168 aa7.28□□□□□ -1.24
LIMCH1-219ENST00000514096 SIGLEC12Q96PQ1 595 aa7.28□□□□□ -1.24
LIMCH1-219ENST00000514096 PELOQ9BRX2 385 aaKnown RBP7.28□□□□□ -1.24
LIMCH1-219ENST00000514096 LANCL2Q9NS86 450 aa7.28□□□□□ -1.24
LIMCH1-219ENST00000514096 C19orf25Q9UFG5 118 aaPredicted RBP7.28□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 54.8 ms