RNA–Protein interactions for RNA: ENST00000494080.5

CCDC88B-209, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 4,563 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-209ENST00000494080 SIPA1L1O43166 1804 aa15.23■□□□□ 0.03
CCDC88B-209ENST00000494080 GOSR2O14653 212 aa15.23■□□□□ 0.03
CCDC88B-209ENST00000494080 PRAF2O60831 178 aa15.23■□□□□ 0.03
CCDC88B-209ENST00000494080 AIFM1O95831 613 aa15.23■□□□□ 0.03
CCDC88B-209ENST00000494080 TMEM156Q8N614 296 aa15.23■□□□□ 0.03
CCDC88B-209ENST00000494080 OR5W2Q8NH69 310 aa15.23■□□□□ 0.03
CCDC88B-209ENST00000494080 PBX4Q9BYU1 374 aa15.23■□□□□ 0.03
CCDC88B-209ENST00000494080 RCE1Q9Y256 329 aa15.23■□□□□ 0.03
CCDC88B-209ENST00000494080 AP1M2Q9Y6Q5 423 aa15.23■□□□□ 0.03
CCDC88B-209ENST00000494080 C9J4A7 227 aa15.23■□□□□ 0.03
CCDC88B-209ENST00000494080 KLK8O60259 260 aa15.23■□□□□ 0.03
CCDC88B-209ENST00000494080 KLK3P07288 261 aaPredicted RBP15.23■□□□□ 0.03
CCDC88B-209ENST00000494080 CTSLP07711 333 aa15.23■□□□□ 0.03
CCDC88B-209ENST00000494080 M6PRP20645 277 aa15.23■□□□□ 0.03
CCDC88B-209ENST00000494080 RORAP35398 523 aa15.23■□□□□ 0.03
CCDC88B-209ENST00000494080 NSDHLQ15738 373 aa15.23■□□□□ 0.03
CCDC88B-209ENST00000494080 BCL2A1Q16548 175 aa15.23■□□□□ 0.03
CCDC88B-209ENST00000494080 TCTE1Q5JU00 501 aa15.23■□□□□ 0.03
CCDC88B-209ENST00000494080 OR56B4Q8NH76 319 aa15.23■□□□□ 0.03
CCDC88B-209ENST00000494080 CDCA4Q9BXL8 241 aa15.23■□□□□ 0.03
CCDC88B-209ENST00000494080 FAM221BA6H8Z2 402 aa15.22■□□□□ 0.03
CCDC88B-209ENST00000494080 C18orf63Q68DL7 685 aa15.22■□□□□ 0.03
CCDC88B-209ENST00000494080 KANSL1Q7Z3B3 1105 aa15.22■□□□□ 0.03
CCDC88B-209ENST00000494080 VN1R2Q8NFZ6 395 aa15.22■□□□□ 0.03
CCDC88B-209ENST00000494080 OR4K13Q8NH42 304 aa15.22■□□□□ 0.03
CCDC88B-209ENST00000494080 EID2BQ96D98 161 aa15.22■□□□□ 0.03
CCDC88B-209ENST00000494080 MS4A8Q9BY19 250 aa15.22■□□□□ 0.03
CCDC88B-209ENST00000494080 SLC7A7Q9UM01 511 aa15.22■□□□□ 0.03
CCDC88B-209ENST00000494080 TRBV5-4A0A0C4DH59 114 aa15.22■□□□□ 0.03
CCDC88B-209ENST00000494080 GRPRP30550 384 aa15.22■□□□□ 0.03
CCDC88B-209ENST00000494080 ACSM3Q53FZ2 586 aa15.22■□□□□ 0.03
CCDC88B-209ENST00000494080 FCRLBQ6BAA4 426 aa15.22■□□□□ 0.03
CCDC88B-209ENST00000494080 VRK2Q86Y07 508 aa15.22■□□□□ 0.03
CCDC88B-209ENST00000494080 OR6N2Q8NGY6 317 aa15.22■□□□□ 0.03
CCDC88B-209ENST00000494080 DCLRE1CQ96SD1 692 aaKnown RBP15.22■□□□□ 0.03
CCDC88B-209ENST00000494080 MCOLN1Q9GZU1 580 aa15.22■□□□□ 0.03
CCDC88B-209ENST00000494080 ZNF350Q9GZX5 532 aa15.22■□□□□ 0.03
CCDC88B-209ENST00000494080 CST11Q9H112 138 aa15.22■□□□□ 0.03
CCDC88B-209ENST00000494080 EPHX3Q9H6B9 360 aa15.22■□□□□ 0.03
CCDC88B-209ENST00000494080 EGLN3Q9H6Z9 239 aa15.22■□□□□ 0.03
CCDC88B-209ENST00000494080 METTL7AQ9H8H3 244 aa15.22■□□□□ 0.03
CCDC88B-209ENST00000494080 FANCFQ9NPI8 374 aa15.22■□□□□ 0.03
CCDC88B-209ENST00000494080 ENTPD2Q9Y5L3 495 aa15.22■□□□□ 0.03
CCDC88B-209ENST00000494080 TRAPPC13A5PLN9 417 aa15.22■□□□□ 0.03
CCDC88B-209ENST00000494080 UPK1AO00322 258 aa15.22■□□□□ 0.03
CCDC88B-209ENST00000494080 SC5DO75845 299 aa15.22■□□□□ 0.03
CCDC88B-209ENST00000494080 B4GALNT1Q00973 533 aa15.22■□□□□ 0.03
CCDC88B-209ENST00000494080 ILKQ13418 452 aa15.22■□□□□ 0.03
CCDC88B-209ENST00000494080 USF2Q15853 346 aaPredicted RBP15.22■□□□□ 0.03
CCDC88B-209ENST00000494080 ADAMTSL4Q6UY14 1074 aa15.22■□□□□ 0.03
CCDC88B-209ENST00000494080 JAGN1Q8N5M9 183 aa15.22■□□□□ 0.03
CCDC88B-209ENST00000494080 ZNF454Q8N9F8 522 aa15.22■□□□□ 0.03
CCDC88B-209ENST00000494080 CDRT4Q8N9R6 151 aa15.22■□□□□ 0.03
CCDC88B-209ENST00000494080 CHTF18Q8WVB6 975 aa15.22■□□□□ 0.03
CCDC88B-209ENST00000494080 ST8SIA4Q92187 359 aa15.22■□□□□ 0.03
CCDC88B-209ENST00000494080 ST6GAL2Q96JF0 529 aa15.22■□□□□ 0.03
CCDC88B-209ENST00000494080 HDAC8Q9BY41 377 aa15.22■□□□□ 0.03
CCDC88B-209ENST00000494080 FGF22Q9HCT0 170 aa15.22■□□□□ 0.03
CCDC88B-209ENST00000494080 USP36Q9P275 1121 aaKnown RBP15.22■□□□□ 0.03
CCDC88B-209ENST00000494080 GREB1LQ9C091 1923 aaPredicted RBP15.22■□□□□ 0.03
CCDC88B-209ENST00000494080 H0Y8X5 98 aa15.22■□□□□ 0.03
CCDC88B-209ENST00000494080 EIF1AYO14602 144 aaKnown RBP15.22■□□□□ 0.03
CCDC88B-209ENST00000494080 DUX1O43812 170 aa15.22■□□□□ 0.03
CCDC88B-209ENST00000494080 AGTR1P30556 359 aa15.22■□□□□ 0.03
CCDC88B-209ENST00000494080 SLC6A12P48065 614 aa15.22■□□□□ 0.03
CCDC88B-209ENST00000494080 CCR6P51684 374 aa15.22■□□□□ 0.03
CCDC88B-209ENST00000494080 GALK2Q01415 458 aa15.22■□□□□ 0.03
CCDC88B-209ENST00000494080 GAB1Q13480 694 aa15.22■□□□□ 0.03
CCDC88B-209ENST00000494080 GPR50Q13585 617 aa15.22■□□□□ 0.03
CCDC88B-209ENST00000494080 GRM7Q14831 915 aa15.22■□□□□ 0.03
CCDC88B-209ENST00000494080 ZNF750Q32MQ0 723 aa15.22■□□□□ 0.03
CCDC88B-209ENST00000494080 PLPP6Q8IY26 295 aa15.22■□□□□ 0.03
CCDC88B-209ENST00000494080 ST8SIA2Q92186 375 aa15.22■□□□□ 0.03
CCDC88B-209ENST00000494080 CPNE2Q96FN4 548 aaPredicted RBP15.22■□□□□ 0.03
CCDC88B-209ENST00000494080 ZDHHC5Q9C0B5 715 aa15.22■□□□□ 0.03
CCDC88B-209ENST00000494080 ASF1BQ9NVP2 202 aa15.22■□□□□ 0.03
CCDC88B-209ENST00000494080 ZNF225Q9UK10 706 aa15.22■□□□□ 0.03
CCDC88B-209ENST00000494080 RNF13O43567 381 aa15.21■□□□□ 0.03
CCDC88B-209ENST00000494080 TLX3O43711 291 aaPredicted RBP15.21■□□□□ 0.03
CCDC88B-209ENST00000494080 PIP5K1CO60331 668 aa15.21■□□□□ 0.03
CCDC88B-209ENST00000494080 FZD7O75084 574 aa15.21■□□□□ 0.03
CCDC88B-209ENST00000494080 RAF1P04049 648 aa15.21■□□□□ 0.03
CCDC88B-209ENST00000494080 AHRP35869 848 aa15.21■□□□□ 0.03
CCDC88B-209ENST00000494080 PLCXD2Q0VAA5 305 aa15.21■□□□□ 0.03
CCDC88B-209ENST00000494080 ERV3-1Q14264 604 aa15.21■□□□□ 0.03
CCDC88B-209ENST00000494080 GPR176Q14439 515 aa15.21■□□□□ 0.03
CCDC88B-209ENST00000494080 MMP21Q8N119 569 aa15.21■□□□□ 0.03
CCDC88B-209ENST00000494080 ZBTB44Q8NCP5 570 aa15.21■□□□□ 0.03
CCDC88B-209ENST00000494080 OR2L3Q8NG85 312 aa15.21■□□□□ 0.03
CCDC88B-209ENST00000494080 TMEM163Q8TC26 289 aa15.21■□□□□ 0.03
CCDC88B-209ENST00000494080 FCRL1Q96LA6 429 aa15.21■□□□□ 0.03
CCDC88B-209ENST00000494080 OPALINQ96PE5 141 aa15.21■□□□□ 0.03
CCDC88B-209ENST00000494080 NARFLQ9H6Q4 476 aa15.21■□□□□ 0.03
CCDC88B-209ENST00000494080 EMC7Q9NPA0 242 aa15.21■□□□□ 0.03
CCDC88B-209ENST00000494080 SERINC1Q9NRX5 453 aa15.21■□□□□ 0.03
CCDC88B-209ENST00000494080 OR51B4Q9Y5P0 310 aa15.21■□□□□ 0.03
CCDC88B-209ENST00000494080 FAM186AA6NE01 2351 aa15.21■□□□□ 0.03
CCDC88B-209ENST00000494080 GMDSO60547 372 aa15.21■□□□□ 0.03
CCDC88B-209ENST00000494080 APBB3O95704 486 aa15.21■□□□□ 0.03
CCDC88B-209ENST00000494080 SLC1A3P43003 542 aa15.21■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 38.1 ms