RNA–Protein interactions for RNA: ENST00000489142.5

VTI1A-206, Transcript of vesicle transport through interaction with t-SNAREs 1A, human

TSL 2

Gene VTI1A, Length 727 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
VTI1A-206	ENST00000489142	PLSCR4	Q9NRQ2	329 aa		12.51	□□□□□ -0.41
VTI1A-206	ENST00000489142	PRR14L	Q5THK1	2151 aa		12.5	□□□□□ -0.41
VTI1A-206	ENST00000489142	GJE1	A6NN92	205 aa		12.5	□□□□□ -0.41
VTI1A-206	ENST00000489142	ADAM11	O75078	769 aa		12.5	□□□□□ -0.41
VTI1A-206	ENST00000489142	AGR2	O95994	175 aa		12.5	□□□□□ -0.41
VTI1A-206	ENST00000489142	RAF1	P04049	648 aa		12.5	□□□□□ -0.41
VTI1A-206	ENST00000489142	CHRM4	P08173	479 aa		12.5	□□□□□ -0.41
VTI1A-206	ENST00000489142	NID1	P14543	1247 aa		12.5	□□□□□ -0.41
VTI1A-206	ENST00000489142	HPCA	P84074	193 aa		12.5	□□□□□ -0.41
VTI1A-206	ENST00000489142	MERTK	Q12866	999 aa		12.5	□□□□□ -0.41
VTI1A-206	ENST00000489142	KEAP1	Q14145	624 aa		12.5	□□□□□ -0.41
VTI1A-206	ENST00000489142	TSC22D1	Q15714	1073 aa		12.5	□□□□□ -0.41
VTI1A-206	ENST00000489142	GTDC1	Q4AE62	458 aa		12.5	□□□□□ -0.41
VTI1A-206	ENST00000489142	PDCD4	Q53EL6	469 aa	Known RBP	12.5	□□□□□ -0.41
VTI1A-206	ENST00000489142	SLC25A53	Q5H9E4	307 aa		12.5	□□□□□ -0.41
VTI1A-206	ENST00000489142	ALKBH2	Q6NS38	261 aa		12.5	□□□□□ -0.41
VTI1A-206	ENST00000489142	FCRLA	Q7L513	359 aa		12.5	□□□□□ -0.41
VTI1A-206	ENST00000489142	NUFIP2	Q7Z417	695 aa	Known RBP	12.5	□□□□□ -0.41
VTI1A-206	ENST00000489142	PIWIL2	Q8TC59	973 aa	Known RBP	12.5	□□□□□ -0.41
VTI1A-206	ENST00000489142	CPNE4	Q96A23	557 aa	Predicted RBP	12.5	□□□□□ -0.41
VTI1A-206	ENST00000489142	MAEL	Q96JY0	434 aa	Known RBP	12.5	□□□□□ -0.41
VTI1A-206	ENST00000489142	HS3ST6	Q96QI5	342 aa		12.5	□□□□□ -0.41
VTI1A-206	ENST00000489142	OR5B2	Q96R09	309 aa		12.5	□□□□□ -0.41
VTI1A-206	ENST00000489142	FOXC2	Q99958	501 aa		12.5	□□□□□ -0.41
VTI1A-206	ENST00000489142	ZNF226	Q9NYT6	803 aa		12.5	□□□□□ -0.41
VTI1A-206	ENST00000489142	SLCO1B7	G3V0H7	640 aa		12.49	□□□□□ -0.41
VTI1A-206	ENST00000489142	RFXANK	O14593	260 aa		12.49	□□□□□ -0.41
VTI1A-206	ENST00000489142	AP3D1	O14617	1153 aa		12.49	□□□□□ -0.41
VTI1A-206	ENST00000489142	SLC22A3	O75751	556 aa		12.49	□□□□□ -0.41
VTI1A-206	ENST00000489142	THBD	P07204	575 aa		12.49	□□□□□ -0.41
VTI1A-206	ENST00000489142	IDO1	P14902	403 aa		12.49	□□□□□ -0.41
VTI1A-206	ENST00000489142	CCNA2	P20248	432 aa		12.49	□□□□□ -0.41
VTI1A-206	ENST00000489142	CRYGS	P22914	178 aa		12.49	□□□□□ -0.41
VTI1A-206	ENST00000489142	TTMP	Q5BVD1	217 aa		12.49	□□□□□ -0.41
VTI1A-206	ENST00000489142	AGBL2	Q5U5Z8	902 aa		12.49	□□□□□ -0.41
VTI1A-206	ENST00000489142	C3orf33	Q6P1S2	294 aa		12.49	□□□□□ -0.41
VTI1A-206	ENST00000489142	STAC2	Q6ZMT1	411 aa		12.49	□□□□□ -0.41
VTI1A-206	ENST00000489142	PLEKHM3	Q6ZWE6	761 aa		12.49	□□□□□ -0.41
VTI1A-206	ENST00000489142	ZC3HAV1	Q7Z2W4	902 aa	Known RBP	12.49	□□□□□ -0.41
VTI1A-206	ENST00000489142	TRIML2	Q8N7C3	387 aa		12.49	□□□□□ -0.41
VTI1A-206	ENST00000489142	FAM71C	Q8NEG0	241 aa		12.49	□□□□□ -0.41
VTI1A-206	ENST00000489142	ZNF563	Q8TA94	476 aa		12.49	□□□□□ -0.41
VTI1A-206	ENST00000489142	CNOT9	Q92600	299 aa	Known RBP	12.49	□□□□□ -0.41
VTI1A-206	ENST00000489142	VPS33A	Q96AX1	596 aa		12.49	□□□□□ -0.41
VTI1A-206	ENST00000489142	ZNF775	Q96BV0	537 aa	Predicted RBP	12.49	□□□□□ -0.41
VTI1A-206	ENST00000489142	AURKB	Q96GD4	344 aa	Predicted RBP	12.49	□□□□□ -0.41
VTI1A-206	ENST00000489142	SAP130	Q9H0E3	1048 aa		12.49	□□□□□ -0.41
VTI1A-206	ENST00000489142	CXXC4	Q9H2H0	198 aa		12.49	□□□□□ -0.41
VTI1A-206	ENST00000489142	SLC38A1	Q9H2H9	487 aa		12.49	□□□□□ -0.41
VTI1A-206	ENST00000489142	UBTD1	Q9HAC8	227 aa		12.49	□□□□□ -0.41
VTI1A-206	ENST00000489142	SLCO1B3	Q9NPD5	702 aa		12.49	□□□□□ -0.41
VTI1A-206	ENST00000489142	TIGAR	Q9NQ88	270 aa		12.49	□□□□□ -0.41
VTI1A-206	ENST00000489142	GLRX2	Q9NS18	164 aa		12.49	□□□□□ -0.41
VTI1A-206	ENST00000489142	USH1C	Q9Y6N9	552 aa		12.49	□□□□□ -0.41
VTI1A-206	ENST00000489142	ZNF469	Q96JG9	3925 aa	Predicted RBP	12.48	□□□□□ -0.41
VTI1A-206	ENST00000489142	ETV2	O00321	342 aa	Predicted RBP	12.48	□□□□□ -0.41
VTI1A-206	ENST00000489142	UBD	O15205	165 aa		12.48	□□□□□ -0.41
VTI1A-206	ENST00000489142	DNAJA2	O60884	412 aa		12.48	□□□□□ -0.41
VTI1A-206	ENST00000489142	NR2F1	P10589	423 aa		12.48	□□□□□ -0.41
VTI1A-206	ENST00000489142	ETFA	P13804	333 aa		12.48	□□□□□ -0.41
VTI1A-206	ENST00000489142	PGC	P20142	388 aa		12.48	□□□□□ -0.41
VTI1A-206	ENST00000489142	KCNJ10	P78508	379 aa		12.48	□□□□□ -0.41
VTI1A-206	ENST00000489142	MAPK11	Q15759	364 aa		12.48	□□□□□ -0.41
VTI1A-206	ENST00000489142	DEFB113	Q30KQ7	82 aa		12.48	□□□□□ -0.41
VTI1A-206	ENST00000489142	TMEM201	Q5SNT2	666 aa		12.48	□□□□□ -0.41
VTI1A-206	ENST00000489142	CXorf67	Q86X51	503 aa	Predicted RBP	12.48	□□□□□ -0.41
VTI1A-206	ENST00000489142	ST8SIA1	Q92185	356 aa		12.48	□□□□□ -0.41
VTI1A-206	ENST00000489142	ZNF300	Q96RE9	604 aa	Predicted RBP	12.48	□□□□□ -0.41
VTI1A-206	ENST00000489142	ACTR6	Q9GZN1	396 aa		12.48	□□□□□ -0.41
VTI1A-206	ENST00000489142	CTPS2	Q9NRF8	586 aa		12.48	□□□□□ -0.41
VTI1A-206	ENST00000489142	POLE3	Q9NRF9	147 aa		12.48	□□□□□ -0.41
VTI1A-206	ENST00000489142	ST6GALNAC1	Q9NSC7	600 aa	Predicted RBP	12.48	□□□□□ -0.41
VTI1A-206	ENST00000489142	ACER3	Q9NUN7	267 aa		12.48	□□□□□ -0.41
VTI1A-206	ENST00000489142	KLHL13	Q9P2N7	655 aa		12.48	□□□□□ -0.41
VTI1A-206	ENST00000489142	SLC35A3	Q9Y2D2	325 aa		12.48	□□□□□ -0.41
VTI1A-206	ENST00000489142	VPS13C	Q709C8	3753 aa		12.48	□□□□□ -0.41
VTI1A-206	ENST00000489142	RAI1	Q7Z5J4	1906 aa	Predicted RBP	12.47	□□□□□ -0.41
VTI1A-206	ENST00000489142	KLF11	O14901	512 aa		12.47	□□□□□ -0.41
VTI1A-206	ENST00000489142	SMAD9	O15198	467 aa	Known RBP	12.47	□□□□□ -0.41
VTI1A-206	ENST00000489142	PRKD3	O94806	890 aa		12.47	□□□□□ -0.41
VTI1A-206	ENST00000489142	GOSR1	O95249	250 aa		12.47	□□□□□ -0.41
VTI1A-206	ENST00000489142	ANP32D	O95626	131 aa		12.47	□□□□□ -0.41
VTI1A-206	ENST00000489142	IL6	P05231	212 aa		12.47	□□□□□ -0.41
VTI1A-206	ENST00000489142	FES	P07332	822 aa		12.47	□□□□□ -0.41
VTI1A-206	ENST00000489142	PABPC4L	P0CB38	370 aa	Known RBP	12.47	□□□□□ -0.41
VTI1A-206	ENST00000489142	TFPI	P10646	304 aa		12.47	□□□□□ -0.41
VTI1A-206	ENST00000489142	CD53	P19397	219 aa		12.47	□□□□□ -0.41
VTI1A-206	ENST00000489142	EDNRA	P25101	427 aa		12.47	□□□□□ -0.41
VTI1A-206	ENST00000489142	IDH2	P48735	452 aa	Known RBP	12.47	□□□□□ -0.41
VTI1A-206	ENST00000489142	PCYT1A	P49585	367 aa		12.47	□□□□□ -0.41
VTI1A-206	ENST00000489142	DIO1	P49895	249 aa		12.47	□□□□□ -0.41
VTI1A-206	ENST00000489142	POLR2J	P52435	117 aa	Known RBP	12.47	□□□□□ -0.41
VTI1A-206	ENST00000489142	RNPS1	Q15287	305 aa	Known RBP	12.47	□□□□□ -0.41
VTI1A-206	ENST00000489142	GSTA3	Q16772	222 aa		12.47	□□□□□ -0.41
VTI1A-206	ENST00000489142	RPS26P11	Q5JNZ5	115 aa	Predicted RBP	12.47	□□□□□ -0.41
VTI1A-206	ENST00000489142	C6orf10	Q5SRN2	563 aa		12.47	□□□□□ -0.41
VTI1A-206	ENST00000489142	GTF2IRD2B	Q6EKJ0	949 aa		12.47	□□□□□ -0.41
VTI1A-206	ENST00000489142	EPGN	Q6UW88	154 aa		12.47	□□□□□ -0.41
VTI1A-206	ENST00000489142	TFAP2E	Q6VUC0	442 aa		12.47	□□□□□ -0.41
VTI1A-206	ENST00000489142	BEND4	Q6ZU67	534 aa		12.47	□□□□□ -0.41

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