RNA–Protein interactions for RNA: ENST00000486549.5

USP4-212, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 5

Gene USP4, Length 749 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-212ENST00000486549 INTS1Q8N201 2190 aaKnown RBP13.28□□□□□ -0.28
USP4-212ENST00000486549 A0A0J9YW62 118 aa13.27□□□□□ -0.29
USP4-212ENST00000486549 GMNCA6NCL1 334 aa13.27□□□□□ -0.29
USP4-212ENST00000486549 DVL2O14641 736 aa13.27□□□□□ -0.29
USP4-212ENST00000486549 EFNA2O43921 213 aa13.27□□□□□ -0.29
USP4-212ENST00000486549 ADAM11O75078 769 aa13.27□□□□□ -0.29
USP4-212ENST00000486549 PGM3O95394 542 aa13.27□□□□□ -0.29
USP4-212ENST00000486549 TMIGD3P0DMS9 266 aaPredicted RBP13.27□□□□□ -0.29
USP4-212ENST00000486549 ADH6P28332 368 aa13.27□□□□□ -0.29
USP4-212ENST00000486549 SESN3P58005 492 aa13.27□□□□□ -0.29
USP4-212ENST00000486549 CDK6Q00534 326 aa13.27□□□□□ -0.29
USP4-212ENST00000486549 MERTKQ12866 999 aa13.27□□□□□ -0.29
USP4-212ENST00000486549 FOXF2Q12947 444 aa13.27□□□□□ -0.29
USP4-212ENST00000486549 SCARB2Q14108 478 aa13.27□□□□□ -0.29
USP4-212ENST00000486549 LARS2Q15031 903 aaKnown RBP13.27□□□□□ -0.29
USP4-212ENST00000486549 PON3Q15166 354 aa13.27□□□□□ -0.29
USP4-212ENST00000486549 GDF7Q7Z4P5 450 aa13.27□□□□□ -0.29
USP4-212ENST00000486549 MTDHQ86UE4 582 aaKnown RBP13.27□□□□□ -0.29
USP4-212ENST00000486549 OR10D3Q8NH80 312 aa13.27□□□□□ -0.29
USP4-212ENST00000486549 OR2V1Q8NHB1 315 aa13.27□□□□□ -0.29
USP4-212ENST00000486549 FNDC9Q8TBE3 224 aa13.27□□□□□ -0.29
USP4-212ENST00000486549 TMEM234Q8WY98 164 aa13.27□□□□□ -0.29
USP4-212ENST00000486549 KLHL15Q96M94 604 aa13.27□□□□□ -0.29
USP4-212ENST00000486549 UCN2Q96RP3 112 aa13.27□□□□□ -0.29
USP4-212ENST00000486549 BCL2L10Q9HD36 194 aa13.27□□□□□ -0.29
USP4-212ENST00000486549 RLIMQ9NVW2 624 aa13.27□□□□□ -0.29
USP4-212ENST00000486549 GMEB1Q9Y692 573 aa13.27□□□□□ -0.29
USP4-212ENST00000486549 HCFC1P51610 2035 aa13.27□□□□□ -0.29
USP4-212ENST00000486549 CDHR4A6H8M9 788 aa13.26□□□□□ -0.29
USP4-212ENST00000486549 BBIP1A8MTZ0 92 aa13.26□□□□□ -0.29
USP4-212ENST00000486549 CXCL13O43927 109 aa13.26□□□□□ -0.29
USP4-212ENST00000486549 CCDC22O60826 627 aa13.26□□□□□ -0.29
USP4-212ENST00000486549 DNAJA2O60884 412 aa13.26□□□□□ -0.29
USP4-212ENST00000486549 NTN1O95631 604 aa13.26□□□□□ -0.29
USP4-212ENST00000486549 THBS1P07996 1170 aa13.26□□□□□ -0.29
USP4-212ENST00000486549 PABPC4LP0CB38 370 aaKnown RBP13.26□□□□□ -0.29
USP4-212ENST00000486549 GKN3PP0CG01 181 aa13.26□□□□□ -0.29
USP4-212ENST00000486549 SLC6A2P23975 617 aa13.26□□□□□ -0.29
USP4-212ENST00000486549 CTSSP25774 331 aa13.26□□□□□ -0.29
USP4-212ENST00000486549 AQP1P29972 269 aa13.26□□□□□ -0.29
USP4-212ENST00000486549 ADSLP30566 484 aaPredicted RBP13.26□□□□□ -0.29
USP4-212ENST00000486549 SLC6A8P48029 635 aa13.26□□□□□ -0.29
USP4-212ENST00000486549 IDH2P48735 452 aaKnown RBP13.26□□□□□ -0.29
USP4-212ENST00000486549 EEF1A1P68104 462 aaKnown RBP13.26□□□□□ -0.29
USP4-212ENST00000486549 CENPEQ02224 2701 aa13.26□□□□□ -0.29
USP4-212ENST00000486549 SELENBP1Q13228 472 aa13.26□□□□□ -0.29
USP4-212ENST00000486549 CYLC2Q14093 348 aaPredicted RBP13.26□□□□□ -0.29
USP4-212ENST00000486549 CTU2Q2VPK5 515 aaKnown RBP13.26□□□□□ -0.29
USP4-212ENST00000486549 SLC25A35Q3KQZ1 300 aa13.26□□□□□ -0.29
USP4-212ENST00000486549 TMEM176BQ3YBM2 270 aaPredicted RBP13.26□□□□□ -0.29
USP4-212ENST00000486549 SLC25A53Q5H9E4 307 aa13.26□□□□□ -0.29
USP4-212ENST00000486549 ZNF311Q5JNZ3 666 aa13.26□□□□□ -0.29
USP4-212ENST00000486549 PDSS1Q5T2R2 415 aa13.26□□□□□ -0.29
USP4-212ENST00000486549 PRAMEF8Q5VWM4 474 aa13.26□□□□□ -0.29
USP4-212ENST00000486549 PRAMEF7Q5VXH5 474 aa13.26□□□□□ -0.29
USP4-212ENST00000486549 HBMQ6B0K9 141 aa13.26□□□□□ -0.29
USP4-212ENST00000486549 REEP3Q6NUK4 255 aa13.26□□□□□ -0.29
USP4-212ENST00000486549 ESPNLQ6ZVH7 1005 aa13.26□□□□□ -0.29
USP4-212ENST00000486549 LSRQ86X29 649 aaPredicted RBP13.26□□□□□ -0.29
USP4-212ENST00000486549 RELL2Q8NC24 303 aaPredicted RBP13.26□□□□□ -0.29
USP4-212ENST00000486549 ADGRG7Q96K78 797 aa13.26□□□□□ -0.29
USP4-212ENST00000486549 PRRG4Q9BZD6 226 aa13.26□□□□□ -0.29
USP4-212ENST00000486549 PIF1Q9H611 641 aa13.26□□□□□ -0.29
USP4-212ENST00000486549 TMEM38AQ9H6F2 299 aa13.26□□□□□ -0.29
USP4-212ENST00000486549 ACER3Q9NUN7 267 aa13.26□□□□□ -0.29
USP4-212ENST00000486549 ZNF232Q9UNY5 417 aa13.26□□□□□ -0.29
USP4-212ENST00000486549 IFT52Q9Y366 437 aa13.26□□□□□ -0.29
USP4-212ENST00000486549 TEX15Q9BXT5 2789 aa13.26□□□□□ -0.29
USP4-212ENST00000486549 CFAP73A6NFT4 308 aa13.25□□□□□ -0.29
USP4-212ENST00000486549 GJE1A6NN92 205 aa13.25□□□□□ -0.29
USP4-212ENST00000486549 SLC22A2O15244 555 aa13.25□□□□□ -0.29
USP4-212ENST00000486549 RCBTB2O95199 551 aa13.25□□□□□ -0.29
USP4-212ENST00000486549 SYNGR4O95473 234 aa13.25□□□□□ -0.29
USP4-212ENST00000486549 UQCRBP14927 111 aa13.25□□□□□ -0.29
USP4-212ENST00000486549 CCNA2P20248 432 aa13.25□□□□□ -0.29
USP4-212ENST00000486549 SLC7A1P30825 629 aa13.25□□□□□ -0.29
USP4-212ENST00000486549 EPS8Q12929 822 aa13.25□□□□□ -0.29
USP4-212ENST00000486549 ADRM1Q16186 407 aa13.25□□□□□ -0.29
USP4-212ENST00000486549 RABL3Q5HYI8 236 aa13.25□□□□□ -0.29
USP4-212ENST00000486549 COQ5Q5HYK3 327 aa13.25□□□□□ -0.29
USP4-212ENST00000486549 RNF220Q5VTB9 566 aa13.25□□□□□ -0.29
USP4-212ENST00000486549 NANOGP8Q6NSW7 305 aa13.25□□□□□ -0.29
USP4-212ENST00000486549 C3orf33Q6P1S2 294 aa13.25□□□□□ -0.29
USP4-212ENST00000486549 PLEKHM3Q6ZWE6 761 aa13.25□□□□□ -0.29
USP4-212ENST00000486549 MCEMP1Q8IX19 187 aa13.25□□□□□ -0.29
USP4-212ENST00000486549 CLIP4Q8N3C7 705 aa13.25□□□□□ -0.29
USP4-212ENST00000486549 PCYOX1LQ8NBM8 494 aa13.25□□□□□ -0.29
USP4-212ENST00000486549 HIPK4Q8NE63 616 aa13.25□□□□□ -0.29
USP4-212ENST00000486549 OR10A6Q8NH74 314 aa13.25□□□□□ -0.29
USP4-212ENST00000486549 LRRC58Q96CX6 371 aa13.25□□□□□ -0.29
USP4-212ENST00000486549 RCN3Q96D15 328 aa13.25□□□□□ -0.29
USP4-212ENST00000486549 SPATA9Q9BWV2 254 aa13.25□□□□□ -0.29
USP4-212ENST00000486549 ARMC7Q9H6L4 198 aa13.25□□□□□ -0.29
USP4-212ENST00000486549 NANOGQ9H9S0 305 aa13.25□□□□□ -0.29
USP4-212ENST00000486549 CTPS2Q9NRF8 586 aa13.25□□□□□ -0.29
USP4-212ENST00000486549 SERINC1Q9NRX5 453 aa13.25□□□□□ -0.29
USP4-212ENST00000486549 ZNF629Q9UEG4 869 aaPredicted RBP13.25□□□□□ -0.29
USP4-212ENST00000486549 MCTS1Q9ULC4 181 aaKnown RBP13.25□□□□□ -0.29
USP4-212ENST00000486549 ANGPT4Q9Y264 503 aa13.25□□□□□ -0.29
USP4-212ENST00000486549 ZNF175Q9Y473 711 aa13.25□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms