RNA–Protein interactions for RNA: ENST00000474056.5

UPF3A-203, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 3

Gene UPF3A, Length 748 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-203ENST00000474056 VPS33AQ96AX1 596 aa16.03■□□□□ 0.16
UPF3A-203ENST00000474056 TRNT1Q96Q11 434 aaKnown RBP16.03■□□□□ 0.16
UPF3A-203ENST00000474056 TCF7L2Q9NQB0 619 aa16.03■□□□□ 0.16
UPF3A-203ENST00000474056 ARGLU1Q9NWB6 273 aaPredicted RBP16.03■□□□□ 0.16
UPF3A-203ENST00000474056 TESMINQ9Y4I5 508 aa16.03■□□□□ 0.16
UPF3A-203ENST00000474056 TEP1Q99973 2627 aaKnown RBP16.03■□□□□ 0.16
UPF3A-203ENST00000474056 UQCRHLA0A096LP55 91 aa16.02■□□□□ 0.16
UPF3A-203ENST00000474056 GJE1A6NN92 205 aa16.02■□□□□ 0.16
UPF3A-203ENST00000474056 POLR3GO15318 223 aaPredicted RBP16.02■□□□□ 0.16
UPF3A-203ENST00000474056 ANP32DO95626 131 aa16.02■□□□□ 0.16
UPF3A-203ENST00000474056 KRT75O95678 551 aa16.02■□□□□ 0.16
UPF3A-203ENST00000474056 AGTR1P30556 359 aa16.02■□□□□ 0.16
UPF3A-203ENST00000474056 PCYT1AP49585 367 aa16.02■□□□□ 0.16
UPF3A-203ENST00000474056 ANXA11P50995 505 aaKnown RBP16.02■□□□□ 0.16
UPF3A-203ENST00000474056 EXOC3L2Q2M3D2 409 aa16.02■□□□□ 0.16
UPF3A-203ENST00000474056 MSANTD1Q6ZTZ1 278 aa16.02■□□□□ 0.16
UPF3A-203ENST00000474056 RNF128Q8TEB7 428 aa16.02■□□□□ 0.16
UPF3A-203ENST00000474056 ABHD3Q8WU67 409 aa16.02■□□□□ 0.16
UPF3A-203ENST00000474056 DYDC1Q8WWB3 177 aa16.02■□□□□ 0.16
UPF3A-203ENST00000474056 ST8SIA1Q92185 356 aa16.02■□□□□ 0.16
UPF3A-203ENST00000474056 AURKBQ96GD4 344 aaPredicted RBP16.02■□□□□ 0.16
UPF3A-203ENST00000474056 WFIKKN1Q96NZ8 548 aa16.02■□□□□ 0.16
UPF3A-203ENST00000474056 RMND5AQ9H871 391 aa16.02■□□□□ 0.16
UPF3A-203ENST00000474056 VIPAS39Q9H9C1 493 aa16.02■□□□□ 0.16
UPF3A-203ENST00000474056 PLSCR4Q9NRQ2 329 aa16.02■□□□□ 0.16
UPF3A-203ENST00000474056 GLRX2Q9NS18 164 aa16.02■□□□□ 0.16
UPF3A-203ENST00000474056 ST6GALNAC1Q9NSC7 600 aaPredicted RBP16.02■□□□□ 0.16
UPF3A-203ENST00000474056 ELOVL5Q9NYP7 299 aa16.02■□□□□ 0.16
UPF3A-203ENST00000474056 NDRG3Q9UGV2 375 aa16.02■□□□□ 0.16
UPF3A-203ENST00000474056 LIPT1Q9Y234 373 aa16.02■□□□□ 0.16
UPF3A-203ENST00000474056 A0A1W2PPR1 153 aa16.01■□□□□ 0.15
UPF3A-203ENST00000474056 FAM234BA2RU67 622 aa16.01■□□□□ 0.15
UPF3A-203ENST00000474056 HMGB1P1B2RPK0 211 aaPredicted RBP16.01■□□□□ 0.15
UPF3A-203ENST00000474056 ADAM11O75078 769 aa16.01■□□□□ 0.15
UPF3A-203ENST00000474056 TGDSO95455 350 aa16.01■□□□□ 0.15
UPF3A-203ENST00000474056 HRGP04196 525 aa16.01■□□□□ 0.15
UPF3A-203ENST00000474056 ZCCHC18P0CG32 403 aa16.01■□□□□ 0.15
UPF3A-203ENST00000474056 ETFAP13804 333 aa16.01■□□□□ 0.15
UPF3A-203ENST00000474056 RPS4Y1P22090 263 aaKnown RBP16.01■□□□□ 0.15
UPF3A-203ENST00000474056 SLC7A1P30825 629 aa16.01■□□□□ 0.15
UPF3A-203ENST00000474056 RYKP34925 604 aa16.01■□□□□ 0.15
UPF3A-203ENST00000474056 UGT2B10P36537 528 aa16.01■□□□□ 0.15
UPF3A-203ENST00000474056 IDH3AP50213 366 aa16.01■□□□□ 0.15
UPF3A-203ENST00000474056 IST1P53990 364 aa16.01■□□□□ 0.15
UPF3A-203ENST00000474056 PPP2R2AP63151 447 aa16.01■□□□□ 0.15
UPF3A-203ENST00000474056 MERTKQ12866 999 aa16.01■□□□□ 0.15
UPF3A-203ENST00000474056 MAPK11Q15759 364 aa16.01■□□□□ 0.15
UPF3A-203ENST00000474056 C6orf10Q5SRN2 563 aa16.01■□□□□ 0.15
UPF3A-203ENST00000474056 PLEKHM3Q6ZWE6 761 aa16.01■□□□□ 0.15
UPF3A-203ENST00000474056 FCRLAQ7L513 359 aa16.01■□□□□ 0.15
UPF3A-203ENST00000474056 LSRQ86X29 649 aaPredicted RBP16.01■□□□□ 0.15
UPF3A-203ENST00000474056 GOLGA6L1Q8N7Z2 621 aa16.01■□□□□ 0.15
UPF3A-203ENST00000474056 ZNF563Q8TA94 476 aa16.01■□□□□ 0.15
UPF3A-203ENST00000474056 TMEM234Q8WY98 164 aa16.01■□□□□ 0.15
UPF3A-203ENST00000474056 REXO5Q96IC2 774 aaKnown RBP16.01■□□□□ 0.15
UPF3A-203ENST00000474056 ITCHQ96J02 903 aa16.01■□□□□ 0.15
UPF3A-203ENST00000474056 SLC39A3Q9BRY0 314 aa16.01■□□□□ 0.15
UPF3A-203ENST00000474056 C12orf49Q9H741 205 aa16.01■□□□□ 0.15
UPF3A-203ENST00000474056 TPT1P8Q9HAU6 139 aa16.01■□□□□ 0.15
UPF3A-203ENST00000474056 TIGARQ9NQ88 270 aa16.01■□□□□ 0.15
UPF3A-203ENST00000474056 ACER3Q9NUN7 267 aa16.01■□□□□ 0.15
UPF3A-203ENST00000474056 INTS9Q9NV88 658 aaKnown RBP16.01■□□□□ 0.15
UPF3A-203ENST00000474056 KLHL28Q9NXS3 571 aa16.01■□□□□ 0.15
UPF3A-203ENST00000474056 ST6GALNAC2Q9UJ37 374 aa16.01■□□□□ 0.15
UPF3A-203ENST00000474056 CELSR1Q9NYQ6 3014 aa16■□□□□ 0.15
UPF3A-203ENST00000474056 IGHV3-15A0A0B4J1V0 119 aa16■□□□□ 0.15
UPF3A-203ENST00000474056 AGAP5A6NIR3 686 aa16■□□□□ 0.15
UPF3A-203ENST00000474056 SASH3O75995 380 aa16■□□□□ 0.15
UPF3A-203ENST00000474056 GOSR1O95249 250 aa16■□□□□ 0.15
UPF3A-203ENST00000474056 NR2F1P10589 423 aa16■□□□□ 0.15
UPF3A-203ENST00000474056 CRATP43155 626 aa16■□□□□ 0.15
UPF3A-203ENST00000474056 MRPL19P49406 292 aaKnown RBP16■□□□□ 0.15
UPF3A-203ENST00000474056 AQP5P55064 265 aa16■□□□□ 0.15
UPF3A-203ENST00000474056 STX1BP61266 288 aa16■□□□□ 0.15
UPF3A-203ENST00000474056 SLC2A7Q6PXP3 512 aa16■□□□□ 0.15
UPF3A-203ENST00000474056 ZNF550Q7Z398 422 aa16■□□□□ 0.15
UPF3A-203ENST00000474056 ARFGAP2Q8N6H7 521 aa16■□□□□ 0.15
UPF3A-203ENST00000474056 WDR60Q8WVS4 1066 aa16■□□□□ 0.15
UPF3A-203ENST00000474056 CNOT9Q92600 299 aaKnown RBP16■□□□□ 0.15
UPF3A-203ENST00000474056 GTF2H4Q92759 462 aa16■□□□□ 0.15
UPF3A-203ENST00000474056 NINJ1Q92982 152 aa16■□□□□ 0.15
UPF3A-203ENST00000474056 CCDC28BQ9BUN5 200 aa16■□□□□ 0.15
UPF3A-203ENST00000474056 KLHL4Q9C0H6 718 aa16■□□□□ 0.15
UPF3A-203ENST00000474056 EXOSC3Q9NQT5 275 aaKnown RBP16■□□□□ 0.15
UPF3A-203ENST00000474056 CTPS2Q9NRF8 586 aa16■□□□□ 0.15
UPF3A-203ENST00000474056 CCM2LQ9NUG4 571 aaPredicted RBP16■□□□□ 0.15
UPF3A-203ENST00000474056 PLEKHA6Q9Y2H5 1048 aa16■□□□□ 0.15
UPF3A-203ENST00000474056 C16orf97H3BN30 126 aa15.99■□□□□ 0.15
UPF3A-203ENST00000474056 CASKO14936 926 aa15.99■□□□□ 0.15
UPF3A-203ENST00000474056 SIAH2O43255 324 aa15.99■□□□□ 0.15
UPF3A-203ENST00000474056 BCHEP06276 602 aa15.99■□□□□ 0.15
UPF3A-203ENST00000474056 PABPC4LP0CB38 370 aaKnown RBP15.99■□□□□ 0.15
UPF3A-203ENST00000474056 KLK2P20151 261 aa15.99■□□□□ 0.15
UPF3A-203ENST00000474056 ENPP1P22413 925 aa15.99■□□□□ 0.15
UPF3A-203ENST00000474056 ART1P52961 327 aa15.99■□□□□ 0.15
UPF3A-203ENST00000474056 RAC3P60763 192 aa15.99■□□□□ 0.15
UPF3A-203ENST00000474056 DSTNP60981 165 aa15.99■□□□□ 0.15
UPF3A-203ENST00000474056 ANKRD34AQ69YU3 496 aa15.99■□□□□ 0.15
UPF3A-203ENST00000474056 GTF2IRD2BQ6EKJ0 949 aa15.99■□□□□ 0.15
UPF3A-203ENST00000474056 C22orf34Q6ZV56 151 aa15.99■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 36 ms