RNA–Protein interactions for RNA: ENST00000448833.5

VPS41-208, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 1 (best)

Gene VPS41, Length 711 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-208ENST00000448833 TMEM185BQ9H7F4 350 aa6.3□□□□□ -1.4
VPS41-208ENST00000448833 CXorf36Q9H7Y0 433 aa6.3□□□□□ -1.4
VPS41-208ENST00000448833 SSU72Q9NP77 194 aaKnown RBP6.3□□□□□ -1.4
VPS41-208ENST00000448833 SLC17A7Q9P2U7 560 aa6.3□□□□□ -1.4
VPS41-208ENST00000448833 ZDHHC2Q9UIJ5 367 aa6.3□□□□□ -1.4
VPS41-208ENST00000448833 RAP2CQ9Y3L5 183 aa6.3□□□□□ -1.4
VPS41-208ENST00000448833 NSD1Q96L73 2696 aaPredicted RBP6.3□□□□□ -1.4
VPS41-208ENST00000448833 TMEM233B4DJY2 109 aa6.29□□□□□ -1.4
VPS41-208ENST00000448833 SULT2B1O00204 365 aa6.29□□□□□ -1.4
VPS41-208ENST00000448833 RGS16O15492 202 aaPredicted RBP6.29□□□□□ -1.4
VPS41-208ENST00000448833 CYTIPO60759 359 aa6.29□□□□□ -1.4
VPS41-208ENST00000448833 DNAJA2O60884 412 aa6.29□□□□□ -1.4
VPS41-208ENST00000448833 SPAG7O75391 227 aa6.29□□□□□ -1.4
VPS41-208ENST00000448833 SKAP2O75563 359 aaPredicted RBP6.29□□□□□ -1.4
VPS41-208ENST00000448833 GCM2O75603 506 aaPredicted RBP6.29□□□□□ -1.4
VPS41-208ENST00000448833 NTN1O95631 604 aa6.29□□□□□ -1.4
VPS41-208ENST00000448833 LY6G6DO95868 133 aa6.29□□□□□ -1.4
VPS41-208ENST00000448833 ADAP00813 363 aa6.29□□□□□ -1.4
VPS41-208ENST00000448833 SERPINE1P05121 402 aa6.29□□□□□ -1.4
VPS41-208ENST00000448833 G6PDP11413 515 aa6.29□□□□□ -1.4
VPS41-208ENST00000448833 BMP4P12644 408 aa6.29□□□□□ -1.4
VPS41-208ENST00000448833 NID1P14543 1247 aa6.29□□□□□ -1.4
VPS41-208ENST00000448833 UQCRBP14927 111 aa6.29□□□□□ -1.4
VPS41-208ENST00000448833 EFNA1P20827 205 aaPredicted RBP6.29□□□□□ -1.4
VPS41-208ENST00000448833 UQCRC2P22695 453 aa6.29□□□□□ -1.4
VPS41-208ENST00000448833 PAX7P23759 505 aa6.29□□□□□ -1.4
VPS41-208ENST00000448833 LOXP28300 417 aaPredicted RBP6.29□□□□□ -1.4
VPS41-208ENST00000448833 SOAT1P35610 550 aa6.29□□□□□ -1.4
VPS41-208ENST00000448833 MAGEA8P43361 318 aa6.29□□□□□ -1.4
VPS41-208ENST00000448833 OR3A2P47893 321 aa6.29□□□□□ -1.4
VPS41-208ENST00000448833 RPL14P50914 215 aaKnown RBP6.29□□□□□ -1.4
VPS41-208ENST00000448833 CCR4P51679 360 aa6.29□□□□□ -1.4
VPS41-208ENST00000448833 ATP5J2P56134 94 aa6.29□□□□□ -1.4
VPS41-208ENST00000448833 ABCE1P61221 599 aaKnown RBP6.29□□□□□ -1.4
VPS41-208ENST00000448833 HPCAP84074 193 aa6.29□□□□□ -1.4
VPS41-208ENST00000448833 QPRTQ15274 297 aa6.29□□□□□ -1.4
VPS41-208ENST00000448833 GPR68Q15743 365 aa6.29□□□□□ -1.4
VPS41-208ENST00000448833 TIGD2Q4W5G0 525 aa6.29□□□□□ -1.4
VPS41-208ENST00000448833 TIMM23BQ5SRD1 257 aa6.29□□□□□ -1.4
VPS41-208ENST00000448833 NCMAPQ5T1S8 102 aa6.29□□□□□ -1.4
VPS41-208ENST00000448833 OR7E24Q6IFN5 339 aa6.29□□□□□ -1.4
VPS41-208ENST00000448833 WDR93Q6P2C0 686 aa6.29□□□□□ -1.4
VPS41-208ENST00000448833 KLHL17Q6TDP4 642 aa6.29□□□□□ -1.4
VPS41-208ENST00000448833 CBLN3Q6UW01 205 aa6.29□□□□□ -1.4
VPS41-208ENST00000448833 TFAP2EQ6VUC0 442 aa6.29□□□□□ -1.4
VPS41-208ENST00000448833 ZCCHC23Q6ZST2 131 aa6.29□□□□□ -1.4
VPS41-208ENST00000448833 BHLHA15Q7RTS1 189 aaPredicted RBP6.29□□□□□ -1.4
VPS41-208ENST00000448833 GALNT5Q7Z7M9 940 aa6.29□□□□□ -1.4
VPS41-208ENST00000448833 KRTAP1-3Q8IUG1 177 aa6.29□□□□□ -1.4
VPS41-208ENST00000448833 TUSC5Q8IXB3 177 aa6.29□□□□□ -1.4
VPS41-208ENST00000448833 CMIPQ8IY22 773 aa6.29□□□□□ -1.4
VPS41-208ENST00000448833 ZNF100Q8IYN0 542 aa6.29□□□□□ -1.4
VPS41-208ENST00000448833 ATP6V1C2Q8NEY4 427 aa6.29□□□□□ -1.4
VPS41-208ENST00000448833 OR4A15Q8NGL6 344 aa6.29□□□□□ -1.4
VPS41-208ENST00000448833 RFWD2Q8NHY2 731 aa6.29□□□□□ -1.4
VPS41-208ENST00000448833 PIWIL2Q8TC59 973 aaKnown RBP6.29□□□□□ -1.4
VPS41-208ENST00000448833 ABHD3Q8WU67 409 aa6.29□□□□□ -1.4
VPS41-208ENST00000448833 AKAP1Q92667 903 aaKnown RBP eCLIP6.29□□□□□ -1.4
VPS41-208ENST00000448833 TESCQ96BS2 214 aa6.29□□□□□ -1.4
VPS41-208ENST00000448833 OTUB1Q96FW1 271 aaPredicted RBP6.29□□□□□ -1.4
VPS41-208ENST00000448833 SLC35G5Q96KT7 338 aa6.29□□□□□ -1.4
VPS41-208ENST00000448833 C3orf30Q96M34 536 aa6.29□□□□□ -1.4
VPS41-208ENST00000448833 OR5B2Q96R09 309 aa6.29□□□□□ -1.4
VPS41-208ENST00000448833 C1orf50Q9BV19 199 aa6.29□□□□□ -1.4
VPS41-208ENST00000448833 THUMPD3Q9BV44 507 aaKnown RBP6.29□□□□□ -1.4
VPS41-208ENST00000448833 MECRQ9BV79 373 aa6.29□□□□□ -1.4
VPS41-208ENST00000448833 GRIP2Q9C0E4 1043 aa6.29□□□□□ -1.4
VPS41-208ENST00000448833 ALG2Q9H553 416 aa6.29□□□□□ -1.4
VPS41-208ENST00000448833 BARX1Q9HBU1 254 aaPredicted RBP6.29□□□□□ -1.4
VPS41-208ENST00000448833 EXOSC3Q9NQT5 275 aaKnown RBP6.29□□□□□ -1.4
VPS41-208ENST00000448833 ST6GALNAC1Q9NSC7 600 aaPredicted RBP6.29□□□□□ -1.4
VPS41-208ENST00000448833 ACER3Q9NUN7 267 aa6.29□□□□□ -1.4
VPS41-208ENST00000448833 PARPBPQ9NWS1 579 aa6.29□□□□□ -1.4
VPS41-208ENST00000448833 MGAT4BQ9UQ53 548 aa6.29□□□□□ -1.4
VPS41-208ENST00000448833 LIPT1Q9Y234 373 aa6.29□□□□□ -1.4
VPS41-208ENST00000448833 TRAPPC4Q9Y296 219 aa6.29□□□□□ -1.4
VPS41-208ENST00000448833 HDGFL3Q9Y3E1 203 aa6.29□□□□□ -1.4
VPS41-208ENST00000448833 WDR45Q9Y484 360 aa6.29□□□□□ -1.4
VPS41-208ENST00000448833 ABCA2Q9BZC7 2435 aa6.29□□□□□ -1.4
VPS41-208ENST00000448833 ROS1P08922 2347 aa6.28□□□□□ -1.4
VPS41-208ENST00000448833 CHD3Q12873 2000 aaKnown RBP6.28□□□□□ -1.4
VPS41-208ENST00000448833 RNF103-CHMP3A0A140T963 221 aa6.28□□□□□ -1.4
VPS41-208ENST00000448833 A0A1W2PP18 115 aa6.28□□□□□ -1.4
VPS41-208ENST00000448833 FAM234BA2RU67 622 aa6.28□□□□□ -1.4
VPS41-208ENST00000448833 TYROBPO43914 113 aa6.28□□□□□ -1.4
VPS41-208ENST00000448833 EFNA2O43921 213 aa6.28□□□□□ -1.4
VPS41-208ENST00000448833 EIF1BO60739 113 aaKnown RBP6.28□□□□□ -1.4
VPS41-208ENST00000448833 CYP7B1O75881 506 aa6.28□□□□□ -1.4
VPS41-208ENST00000448833 PMS2P2O95744 297 aa6.28□□□□□ -1.4
VPS41-208ENST00000448833 TP53P04637 393 aaPredicted RBP6.28□□□□□ -1.4
VPS41-208ENST00000448833 LBPP18428 481 aa6.28□□□□□ -1.4
VPS41-208ENST00000448833 GGT1P19440 569 aa6.28□□□□□ -1.4
VPS41-208ENST00000448833 S100A3P33764 101 aa6.28□□□□□ -1.4
VPS41-208ENST00000448833 CHI3L1P36222 383 aaPredicted RBP6.28□□□□□ -1.4
VPS41-208ENST00000448833 ETV4P43268 484 aa6.28□□□□□ -1.4
VPS41-208ENST00000448833 DIO1P49895 249 aa6.28□□□□□ -1.4
VPS41-208ENST00000448833 KHKP50053 298 aa6.28□□□□□ -1.4
VPS41-208ENST00000448833 SESN3P58005 492 aa6.28□□□□□ -1.4
VPS41-208ENST00000448833 DSCR9P59020 149 aa6.28□□□□□ -1.4
VPS41-208ENST00000448833 KCNJ10P78508 379 aa6.28□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 53.3 ms