RNA–Protein interactions for RNA: ENST00000445503.5

MSH6-204, Transcript of mutS homolog 6, humanhuman

TSL 1 (best)

Gene MSH6, Length 4,158 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6-204ENST00000445503 HCAR1Q9BXC0 346 aa11.03□□□□□ -0.64
MSH6-204ENST00000445503 PIGUQ9H490 435 aa11.03□□□□□ -0.64
MSH6-204ENST00000445503 SLC6A20Q9NP91 592 aa11.03□□□□□ -0.64
MSH6-204ENST00000445503 TANC1Q9C0D5 1861 aa11.03□□□□□ -0.64
MSH6-204ENST00000445503 FNDC1Q4ZHG4 1894 aaPredicted RBP11.02□□□□□ -0.64
MSH6-204ENST00000445503 A0A0B4J293 547 aa11.02□□□□□ -0.64
MSH6-204ENST00000445503 KDM4EB2RXH2 506 aaPredicted RBP11.02□□□□□ -0.64
MSH6-204ENST00000445503 SCO2O43819 266 aa11.02□□□□□ -0.64
MSH6-204ENST00000445503 FBXO45P0C2W1 286 aa11.02□□□□□ -0.64
MSH6-204ENST00000445503 MAKP20794 623 aa11.02□□□□□ -0.64
MSH6-204ENST00000445503 PRKAR1BP31321 381 aa11.02□□□□□ -0.64
MSH6-204ENST00000445503 P2RX3P56373 397 aa11.02□□□□□ -0.64
MSH6-204ENST00000445503 PSMA6P60900 246 aaKnown RBP11.02□□□□□ -0.64
MSH6-204ENST00000445503 BIKQ13323 160 aa11.02□□□□□ -0.64
MSH6-204ENST00000445503 SNTA1Q13424 505 aa11.02□□□□□ -0.64
MSH6-204ENST00000445503 ADAMTSL4Q6UY14 1074 aa11.02□□□□□ -0.64
MSH6-204ENST00000445503 ABHD13Q7L211 337 aa11.02□□□□□ -0.64
MSH6-204ENST00000445503 MS4A15Q8N5U1 240 aa11.02□□□□□ -0.64
MSH6-204ENST00000445503 ZNF676Q8N7Q3 588 aa11.02□□□□□ -0.64
MSH6-204ENST00000445503 CAMKVQ8NCB2 501 aa11.02□□□□□ -0.64
MSH6-204ENST00000445503 OR2L8Q8NGY9 312 aa11.02□□□□□ -0.64
MSH6-204ENST00000445503 FGF13Q92913 245 aa11.02□□□□□ -0.64
MSH6-204ENST00000445503 SMARCD2Q92925 531 aa11.02□□□□□ -0.64
MSH6-204ENST00000445503 SIPA1Q96FS4 1042 aa11.02□□□□□ -0.64
MSH6-204ENST00000445503 PRDM7Q9NQW5 492 aa11.02□□□□□ -0.64
MSH6-204ENST00000445503 DIABLOQ9NR28 239 aa11.02□□□□□ -0.64
MSH6-204ENST00000445503 ACOXLQ9NUZ1 547 aa11.02□□□□□ -0.64
MSH6-204ENST00000445503 ASB4Q9Y574 426 aa11.02□□□□□ -0.64
MSH6-204ENST00000445503 SHISA3A0PJX4 238 aa11.02□□□□□ -0.65
MSH6-204ENST00000445503 TSPAN11A1L157 253 aa11.02□□□□□ -0.65
MSH6-204ENST00000445503 A8MUA0 341 aa11.02□□□□□ -0.65
MSH6-204ENST00000445503 ARPC1BO15143 372 aaKnown RBP11.02□□□□□ -0.65
MSH6-204ENST00000445503 RAD1O60671 282 aa11.02□□□□□ -0.65
MSH6-204ENST00000445503 MOSPD3O75425 235 aa11.02□□□□□ -0.65
MSH6-204ENST00000445503 AADACL4Q5VUY2 407 aa11.02□□□□□ -0.65
MSH6-204ENST00000445503 OR8S1Q8NH09 359 aa11.02□□□□□ -0.65
MSH6-204ENST00000445503 COQ8AQ8NI60 647 aa11.02□□□□□ -0.65
MSH6-204ENST00000445503 ZNF563Q8TA94 476 aa11.02□□□□□ -0.65
MSH6-204ENST00000445503 FBXO34Q9NWN3 711 aa11.02□□□□□ -0.65
MSH6-204ENST00000445503 AKAP7Q9P0M2 348 aaPredicted RBP11.02□□□□□ -0.65
MSH6-204ENST00000445503 SERGEFQ9UGK8 458 aa11.02□□□□□ -0.65
MSH6-204ENST00000445503 FLVCR2Q9UPI3 526 aa11.02□□□□□ -0.65
MSH6-204ENST00000445503 SIRT4Q9Y6E7 314 aaPredicted RBP11.02□□□□□ -0.65
MSH6-204ENST00000445503 PLXNA3P51805 1871 aa11.02□□□□□ -0.65
MSH6-204ENST00000445503 OTOL1A6NHN0 477 aaPredicted RBP11.02□□□□□ -0.65
MSH6-204ENST00000445503 ZNF879B4DU55 563 aa11.02□□□□□ -0.65
MSH6-204ENST00000445503 ERVH48-1M5A8F1 160 aa11.02□□□□□ -0.65
MSH6-204ENST00000445503 HIST1H2ABP04908 130 aa11.02□□□□□ -0.65
MSH6-204ENST00000445503 ALDOBP05062 364 aa11.02□□□□□ -0.65
MSH6-204ENST00000445503 CSN2P05814 226 aa11.02□□□□□ -0.65
MSH6-204ENST00000445503 CISD3P0C7P0 127 aa11.02□□□□□ -0.65
MSH6-204ENST00000445503 CTSEP14091 401 aa11.02□□□□□ -0.65
MSH6-204ENST00000445503 HOXD11P31277 338 aaPredicted RBP11.02□□□□□ -0.65
MSH6-204ENST00000445503 RPS21P63220 83 aaKnown RBP11.02□□□□□ -0.65
MSH6-204ENST00000445503 MLF2Q15773 248 aaPredicted RBP11.02□□□□□ -0.65
MSH6-204ENST00000445503 TMEM52BQ4KMG9 183 aa11.02□□□□□ -0.65
MSH6-204ENST00000445503 NIPAL3Q6P499 406 aa11.02□□□□□ -0.65
MSH6-204ENST00000445503 TMEM64Q6YI46 380 aa11.02□□□□□ -0.65
MSH6-204ENST00000445503 HIST3H2AQ7L7L0 130 aa11.02□□□□□ -0.65
MSH6-204ENST00000445503 TCTE3Q8IZS6 198 aa11.02□□□□□ -0.65
MSH6-204ENST00000445503 ZNF619Q8N2I2 560 aa11.02□□□□□ -0.65
MSH6-204ENST00000445503 OR5T3Q8NGG3 340 aa11.02□□□□□ -0.65
MSH6-204ENST00000445503 OR5J2Q8NH18 312 aa11.02□□□□□ -0.65
MSH6-204ENST00000445503 TSEN15Q8WW01 171 aaKnown RBP11.02□□□□□ -0.65
MSH6-204ENST00000445503 HIST1H2ACQ93077 130 aa11.02□□□□□ -0.65
MSH6-204ENST00000445503 NT5DC2Q9H857 520 aa11.02□□□□□ -0.65
MSH6-204ENST00000445503 KCMF1Q9P0J7 381 aa11.02□□□□□ -0.65
MSH6-204ENST00000445503 ZBTB32Q9Y2Y4 487 aaPredicted RBP11.02□□□□□ -0.65
MSH6-204ENST00000445503 POM121CA8CG34 1229 aa11.02□□□□□ -0.65
MSH6-204ENST00000445503 AHCYP23526 432 aa11.02□□□□□ -0.65
MSH6-204ENST00000445503 TMEM69Q5SWH9 247 aa11.02□□□□□ -0.65
MSH6-204ENST00000445503 FIGLAQ6QHK4 219 aa11.02□□□□□ -0.65
MSH6-204ENST00000445503 CREB3L2Q70SY1 520 aa11.02□□□□□ -0.65
MSH6-204ENST00000445503 SPRED2Q7Z698 418 aa11.02□□□□□ -0.65
MSH6-204ENST00000445503 PRSS58Q8IYP2 241 aa11.02□□□□□ -0.65
MSH6-204ENST00000445503 ZNF527Q8NB42 609 aa11.02□□□□□ -0.65
MSH6-204ENST00000445503 C17orf47Q8NEP4 570 aa11.02□□□□□ -0.65
MSH6-204ENST00000445503 LGALS14Q8TCE9 139 aa11.02□□□□□ -0.65
MSH6-204ENST00000445503 HCAR2Q8TDS4 363 aa11.02□□□□□ -0.65
MSH6-204ENST00000445503 THEM6Q8WUY1 208 aa11.02□□□□□ -0.65
MSH6-204ENST00000445503 CNOT9Q92600 299 aaKnown RBP11.02□□□□□ -0.65
MSH6-204ENST00000445503 SLC22A18Q96BI1 424 aa11.02□□□□□ -0.65
MSH6-204ENST00000445503 SENP5Q96HI0 755 aaPredicted RBP11.02□□□□□ -0.65
MSH6-204ENST00000445503 ABHD1Q96SE0 405 aa11.02□□□□□ -0.65
MSH6-204ENST00000445503 SDF2Q99470 211 aa11.02□□□□□ -0.65
MSH6-204ENST00000445503 PPP1R3EQ9H7J1 279 aa11.02□□□□□ -0.65
MSH6-204ENST00000445503 SYNPO2LQ9H987 977 aa11.02□□□□□ -0.65
MSH6-204ENST00000445503 UBQLN2Q9UHD9 624 aa11.02□□□□□ -0.65
MSH6-204ENST00000445503 SLC35A3Q9Y2D2 325 aa11.02□□□□□ -0.65
MSH6-204ENST00000445503 NUBP2Q9Y5Y2 271 aa11.02□□□□□ -0.65
MSH6-204ENST00000445503 MEIS3P1A6NDR6 274 aa11.01□□□□□ -0.65
MSH6-204ENST00000445503 MAS1P04201 325 aa11.01□□□□□ -0.65
MSH6-204ENST00000445503 GRK6P43250 576 aa11.01□□□□□ -0.65
MSH6-204ENST00000445503 AP3S2P59780 193 aa11.01□□□□□ -0.65
MSH6-204ENST00000445503 ERVK-25P63136 954 aa11.01□□□□□ -0.65
MSH6-204ENST00000445503 RUNX3Q13761 415 aa11.01□□□□□ -0.65
MSH6-204ENST00000445503 ZMYND11Q15326 602 aa11.01□□□□□ -0.65
MSH6-204ENST00000445503 ZNF776Q68DI1 518 aaPredicted RBP11.01□□□□□ -0.65
MSH6-204ENST00000445503 FCRLAQ7L513 359 aa11.01□□□□□ -0.65
MSH6-204ENST00000445503 TMPRSS12Q86WS5 348 aa11.01□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 40.5 ms