RNA–Protein interactions for RNA: ENST00000439468.1

VPS41-207, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 5

Gene VPS41, Length 354 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-207ENST00000439468 CCDC152Q4G0S7 254 aa2.54□□□□□ -2
VPS41-207ENST00000439468 TP53I3Q53FA7 332 aa2.54□□□□□ -2
VPS41-207ENST00000439468 ZNF544Q6NX49 715 aa2.54□□□□□ -2
VPS41-207ENST00000439468 BAIAP2L2Q6UXY1 529 aa2.54□□□□□ -2
VPS41-207ENST00000439468 UBQLNLQ8IYU4 475 aa2.54□□□□□ -2
VPS41-207ENST00000439468 TMEM123Q8N131 208 aa2.54□□□□□ -2
VPS41-207ENST00000439468 CLEC4FQ8N1N0 589 aa2.54□□□□□ -2
VPS41-207ENST00000439468 KIR3DL3Q8N743 410 aa2.54□□□□□ -2
VPS41-207ENST00000439468 ZNF525Q8N782 197 aa2.54□□□□□ -2
VPS41-207ENST00000439468 OR2A12Q8NGT7 310 aa2.54□□□□□ -2
VPS41-207ENST00000439468 PAQR8Q8TEZ7 354 aa2.54□□□□□ -2
VPS41-207ENST00000439468 AENQ8WTP8 325 aaKnown RBP2.54□□□□□ -2
VPS41-207ENST00000439468 PELI1Q96FA3 418 aa2.54□□□□□ -2
VPS41-207ENST00000439468 AMDHD1Q96NU7 426 aa2.54□□□□□ -2
VPS41-207ENST00000439468 ZNF607Q96SK3 696 aa2.54□□□□□ -2
VPS41-207ENST00000439468 RIT2Q99578 217 aa2.54□□□□□ -2
VPS41-207ENST00000439468 ZSCAN5AQ9BUG6 496 aa2.54□□□□□ -2
VPS41-207ENST00000439468 DUSP16Q9BY84 665 aa2.54□□□□□ -2
VPS41-207ENST00000439468 NXF5Q9H1B4 397 aaKnown RBP2.54□□□□□ -2
VPS41-207ENST00000439468 PPDPFQ9H3Y8 114 aa2.54□□□□□ -2
VPS41-207ENST00000439468 FANCFQ9NPI8 374 aa2.54□□□□□ -2
VPS41-207ENST00000439468 IL17CQ9P0M4 197 aa2.54□□□□□ -2
VPS41-207ENST00000439468 WRAP73Q9P2S5 460 aaPredicted RBP2.54□□□□□ -2
VPS41-207ENST00000439468 ZNF221Q9UK13 617 aa2.54□□□□□ -2
VPS41-207ENST00000439468 TMCC3Q9ULS5 477 aa2.54□□□□□ -2
VPS41-207ENST00000439468 CA5BQ9Y2D0 317 aa2.54□□□□□ -2
VPS41-207ENST00000439468 MAB21L2Q9Y586 359 aa2.54□□□□□ -2
VPS41-207ENST00000439468 ALG6Q9Y672 507 aa2.54□□□□□ -2
VPS41-207ENST00000439468 BRWD3Q6RI45 1802 aa2.54□□□□□ -2
VPS41-207ENST00000439468 ERICH3Q5RHP9 1530 aa2.53□□□□□ -2
VPS41-207ENST00000439468 UACAQ9BZF9 1416 aa2.53□□□□□ -2
VPS41-207ENST00000439468 METTL21EPA6NDL7 271 aa2.53□□□□□ -2
VPS41-207ENST00000439468 DHRS7CA6NNS2 312 aa2.53□□□□□ -2
VPS41-207ENST00000439468 TBX19O60806 448 aa2.53□□□□□ -2
VPS41-207ENST00000439468 PGCP20142 388 aa2.53□□□□□ -2
VPS41-207ENST00000439468 CALB2P22676 271 aa2.53□□□□□ -2
VPS41-207ENST00000439468 EPHX2P34913 555 aa2.53□□□□□ -2
VPS41-207ENST00000439468 RIPK4P57078 832 aa2.53□□□□□ -2
VPS41-207ENST00000439468 OC90Q02509 493 aaPredicted RBP2.53□□□□□ -2
VPS41-207ENST00000439468 RAB40BQ12829 278 aa2.53□□□□□ -2
VPS41-207ENST00000439468 ZNF658Q5TYW1 1059 aaPredicted RBP2.53□□□□□ -2
VPS41-207ENST00000439468 ATL3Q6DD88 541 aa2.53□□□□□ -2
VPS41-207ENST00000439468 APOBEC3FQ8IUX4 373 aaKnown RBP2.53□□□□□ -2
VPS41-207ENST00000439468 STXBP6Q8NFX7 210 aa2.53□□□□□ -2
VPS41-207ENST00000439468 IL1F10Q8WWZ1 152 aa2.53□□□□□ -2
VPS41-207ENST00000439468 BADQ92934 168 aa2.53□□□□□ -2
VPS41-207ENST00000439468 FAF2Q96CS3 445 aa2.53□□□□□ -2
VPS41-207ENST00000439468 TRIM44Q96DX7 344 aaPredicted RBP2.53□□□□□ -2
VPS41-207ENST00000439468 SH3YL1Q96HL8 342 aaPredicted RBP2.53□□□□□ -2
VPS41-207ENST00000439468 CITED1Q99966 193 aa2.53□□□□□ -2
VPS41-207ENST00000439468 RNF126Q9BV68 326 aa2.53□□□□□ -2
VPS41-207ENST00000439468 CRNKL1Q9BZJ0 848 aaKnown RBP2.53□□□□□ -2
VPS41-207ENST00000439468 Q9H3A6 140 aa2.53□□□□□ -2
VPS41-207ENST00000439468 GORASP2Q9H8Y8 452 aa2.53□□□□□ -2
VPS41-207ENST00000439468 ZNF702PQ9H963 129 aa2.53□□□□□ -2
VPS41-207ENST00000439468 SLC17A5Q9NRA2 495 aa2.53□□□□□ -2
VPS41-207ENST00000439468 VNN3Q9NY84 501 aa2.53□□□□□ -2
VPS41-207ENST00000439468 OR1A1Q9P1Q5 309 aa2.53□□□□□ -2
VPS41-207ENST00000439468 APOBEC3BQ9UH17 382 aaKnown RBP2.53□□□□□ -2
VPS41-207ENST00000439468 KLHL21Q9UJP4 597 aa2.53□□□□□ -2
VPS41-207ENST00000439468 PTBP2Q9UKA9 531 aaKnown RBP2.53□□□□□ -2
VPS41-207ENST00000439468 UBQLN1Q9UMX0 589 aaKnown RBP2.53□□□□□ -2
VPS41-207ENST00000439468 MRPS33Q9Y291 106 aaKnown RBP2.53□□□□□ -2
VPS41-207ENST00000439468 MEMO1Q9Y316 297 aa2.53□□□□□ -2
VPS41-207ENST00000439468 ZNF646O15015 1829 aaPredicted RBP2.53□□□□□ -2
VPS41-207ENST00000439468 ZC3H13Q5T200 1668 aaKnown RBP2.53□□□□□ -2
VPS41-207ENST00000439468 PCNTO95613 3336 aa2.53□□□□□ -2
VPS41-207ENST00000439468 HECW1Q76N89 1606 aa2.53□□□□□ -2
VPS41-207ENST00000439468 TNRC18O15417 2968 aaPredicted RBP2.52□□□□□ -2.01
VPS41-207ENST00000439468 NEO1Q92859 1461 aa2.52□□□□□ -2.01
VPS41-207ENST00000439468 PTPRGP23470 1445 aa2.52□□□□□ -2.01
VPS41-207ENST00000439468 AKNAQ7Z591 1439 aa2.52□□□□□ -2.01
VPS41-207ENST00000439468 KDRP35968 1356 aa2.52□□□□□ -2.01
VPS41-207ENST00000439468 FRMPD3Q5JV73 1810 aa2.52□□□□□ -2.01
VPS41-207ENST00000439468 TUBAL3A6NHL2 446 aa2.52□□□□□ -2.01
VPS41-207ENST00000439468 WWP2O00308 870 aa2.52□□□□□ -2.01
VPS41-207ENST00000439468 BTN3A3O00478 584 aa2.52□□□□□ -2.01
VPS41-207ENST00000439468 MSH4O15457 936 aa2.52□□□□□ -2.01
VPS41-207ENST00000439468 GMFGO60234 142 aa2.52□□□□□ -2.01
VPS41-207ENST00000439468 CABYRO75952 493 aa2.52□□□□□ -2.01
VPS41-207ENST00000439468 HSPB1P04792 205 aaKnown RBP2.52□□□□□ -2.01
VPS41-207ENST00000439468 DUX4L4P0CJ87 422 aa2.52□□□□□ -2.01
VPS41-207ENST00000439468 CD1EP15812 388 aa2.52□□□□□ -2.01
VPS41-207ENST00000439468 IGLL1P15814 213 aa2.52□□□□□ -2.01
VPS41-207ENST00000439468 CYP2B6P20813 491 aa2.52□□□□□ -2.01
VPS41-207ENST00000439468 PRKAR2BP31323 418 aa2.52□□□□□ -2.01
VPS41-207ENST00000439468 UGT1A3P35503 534 aa2.52□□□□□ -2.01
VPS41-207ENST00000439468 GCKP35557 465 aa2.52□□□□□ -2.01
VPS41-207ENST00000439468 P2RY1P47900 373 aa2.52□□□□□ -2.01
VPS41-207ENST00000439468 HNMTP50135 292 aa2.52□□□□□ -2.01
VPS41-207ENST00000439468 DIO3P55073 304 aa2.52□□□□□ -2.01
VPS41-207ENST00000439468 UBE2HP62256 183 aa2.52□□□□□ -2.01
VPS41-207ENST00000439468 CBX1P83916 185 aa2.52□□□□□ -2.01
VPS41-207ENST00000439468 KIAA0040Q15053 153 aa2.52□□□□□ -2.01
VPS41-207ENST00000439468 TAF7Q15545 349 aaPredicted RBP2.52□□□□□ -2.01
VPS41-207ENST00000439468 PRR4Q16378 134 aa2.52□□□□□ -2.01
VPS41-207ENST00000439468 OR2B11Q5JQS5 317 aa2.52□□□□□ -2.01
VPS41-207ENST00000439468 PAGE2BQ5JRK9 111 aa2.52□□□□□ -2.01
VPS41-207ENST00000439468 TTC23Q5W5X9 447 aa2.52□□□□□ -2.01
VPS41-207ENST00000439468 OR5M10Q6IEU7 315 aa2.52□□□□□ -2.01
Retrieved 100 of 20,778 RNA–protein pairs in 53.2 ms