RNA–Protein interactions for RNA: ENST00000430118.1

HMGB3-203, Transcript of high mobility group box 3, humanhuman

TSL 1 (best)

Gene HMGB3, Length 529 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-203ENST00000430118 OPN1MWP04001 364 aa3.57□□□□□ -1.84
HMGB3-203ENST00000430118 RPS17P08708 135 aaKnown RBP3.57□□□□□ -1.84
HMGB3-203ENST00000430118 HIST1H2AGP0C0S8 130 aaPredicted RBP3.57□□□□□ -1.84
HMGB3-203ENST00000430118 OPN1MW2P0DN77 364 aa3.57□□□□□ -1.84
HMGB3-203ENST00000430118 OPN1MW3P0DN78 364 aa3.57□□□□□ -1.84
HMGB3-203ENST00000430118 MCF2P10911 925 aa3.57□□□□□ -1.84
HMGB3-203ENST00000430118 GP9P14770 177 aa3.57□□□□□ -1.84
HMGB3-203ENST00000430118 KCNE1P15382 129 aa3.57□□□□□ -1.84
HMGB3-203ENST00000430118 ANK1P16157 1881 aa3.57□□□□□ -1.84
HMGB3-203ENST00000430118 PRKACAP17612 351 aa3.57□□□□□ -1.84
HMGB3-203ENST00000430118 ATF6P18850 670 aa3.57□□□□□ -1.84
HMGB3-203ENST00000430118 FUT1P19526 365 aa3.57□□□□□ -1.84
HMGB3-203ENST00000430118 AADACP22760 399 aa3.57□□□□□ -1.84
HMGB3-203ENST00000430118 CTNNA2P26232 953 aa3.57□□□□□ -1.84
HMGB3-203ENST00000430118 AKT2P31751 481 aa3.57□□□□□ -1.84
HMGB3-203ENST00000430118 DCTP40126 519 aa3.57□□□□□ -1.84
HMGB3-203ENST00000430118 SLC26A3P40879 764 aa3.57□□□□□ -1.84
HMGB3-203ENST00000430118 ARRB1P49407 418 aaPredicted RBP3.57□□□□□ -1.84
HMGB3-203ENST00000430118 GEMP55040 296 aa3.57□□□□□ -1.84
HMGB3-203ENST00000430118 PLTPP55058 493 aa3.57□□□□□ -1.84
HMGB3-203ENST00000430118 C21orf59P57076 290 aa3.57□□□□□ -1.84
HMGB3-203ENST00000430118 MAP3K7CLP57077 242 aa3.57□□□□□ -1.84
HMGB3-203ENST00000430118 DCDC1P59894 354 aa3.57□□□□□ -1.84
HMGB3-203ENST00000430118 ERVPABLB-1P60509 514 aa3.57□□□□□ -1.84
HMGB3-203ENST00000430118 RPL10AP62906 217 aaKnown RBP3.57□□□□□ -1.84
HMGB3-203ENST00000430118 CDKL1Q00532 357 aa3.57□□□□□ -1.84
HMGB3-203ENST00000430118 POU3F1Q03052 451 aaPredicted RBP3.57□□□□□ -1.84
HMGB3-203ENST00000430118 HSF2Q03933 536 aa3.57□□□□□ -1.84
HMGB3-203ENST00000430118 KDSRQ06136 332 aa3.57□□□□□ -1.84
HMGB3-203ENST00000430118 RIPPLY1Q0D2K3 151 aa3.57□□□□□ -1.84
HMGB3-203ENST00000430118 ELP6Q0PNE2 266 aa3.57□□□□□ -1.84
HMGB3-203ENST00000430118 NME3Q13232 169 aa3.57□□□□□ -1.84
HMGB3-203ENST00000430118 CUL1Q13616 776 aa3.57□□□□□ -1.84
HMGB3-203ENST00000430118 TMEM132DQ14C87 1099 aa3.57□□□□□ -1.84
HMGB3-203ENST00000430118 HEPACAMQ14CZ8 416 aa3.57□□□□□ -1.84
HMGB3-203ENST00000430118 STK38Q15208 465 aa3.57□□□□□ -1.84
HMGB3-203ENST00000430118 CYTH1Q15438 398 aa3.57□□□□□ -1.84
HMGB3-203ENST00000430118 OR1C1Q15619 314 aa3.57□□□□□ -1.84
HMGB3-203ENST00000430118 MPPE1Q53F39 396 aa3.57□□□□□ -1.84
HMGB3-203ENST00000430118 TMEM41BQ5BJD5 291 aa3.57□□□□□ -1.84
HMGB3-203ENST00000430118 SLC25A24Q6NUK1 477 aa3.57□□□□□ -1.84
HMGB3-203ENST00000430118 ANGPTL8Q6UXH0 198 aa3.57□□□□□ -1.84
HMGB3-203ENST00000430118 C4orf22Q6V702 233 aa3.57□□□□□ -1.84
HMGB3-203ENST00000430118 RFPL4BQ6ZWI9 263 aa3.57□□□□□ -1.84
HMGB3-203ENST00000430118 HIST2H2ABQ8IUE6 130 aaPredicted RBP3.57□□□□□ -1.84
HMGB3-203ENST00000430118 CLVS1Q8IUQ0 354 aaPredicted RBP3.57□□□□□ -1.84
HMGB3-203ENST00000430118 ASCC3Q8N3C0 2202 aaKnown RBP3.57□□□□□ -1.84
HMGB3-203ENST00000430118 DEFB119Q8N690 84 aa3.57□□□□□ -1.84
HMGB3-203ENST00000430118 BCORP1Q8N888 145 aa3.57□□□□□ -1.84
HMGB3-203ENST00000430118 NIPA2Q8N8Q9 360 aa3.57□□□□□ -1.84
HMGB3-203ENST00000430118 DMBX1Q8NFW5 382 aa3.57□□□□□ -1.84
HMGB3-203ENST00000430118 OR52B4Q8NGK2 314 aa3.57□□□□□ -1.84
HMGB3-203ENST00000430118 OR13C5Q8NGS8 318 aa3.57□□□□□ -1.84
HMGB3-203ENST00000430118 C8orf46Q8TAG6 207 aa3.57□□□□□ -1.84
HMGB3-203ENST00000430118 SLC2A14Q8TDB8 520 aa3.57□□□□□ -1.84
HMGB3-203ENST00000430118 SHROOM3Q8TF72 1996 aa3.57□□□□□ -1.84
HMGB3-203ENST00000430118 CHPT1Q8WUD6 406 aa3.57□□□□□ -1.84
HMGB3-203ENST00000430118 SCFD1Q8WVM8 642 aa3.57□□□□□ -1.84
HMGB3-203ENST00000430118 DNASE2BQ8WZ79 361 aa3.57□□□□□ -1.84
HMGB3-203ENST00000430118 HIST1H2ACQ93077 130 aa3.57□□□□□ -1.84
HMGB3-203ENST00000430118 NCLNQ969V3 563 aa3.57□□□□□ -1.84
HMGB3-203ENST00000430118 RAB7BQ96AH8 199 aa3.57□□□□□ -1.84
HMGB3-203ENST00000430118 CIDECQ96AQ7 238 aaPredicted RBP3.57□□□□□ -1.84
HMGB3-203ENST00000430118 PINX1Q96BK5 328 aaKnown RBP3.57□□□□□ -1.84
HMGB3-203ENST00000430118 OTUB2Q96DC9 234 aa3.57□□□□□ -1.84
HMGB3-203ENST00000430118 BPIFA2Q96DR5 249 aa3.57□□□□□ -1.84
HMGB3-203ENST00000430118 RBM18Q96H35 190 aaKnown RBP3.57□□□□□ -1.84
HMGB3-203ENST00000430118 DOCK6Q96HP0 2047 aa3.57□□□□□ -1.84
HMGB3-203ENST00000430118 ARL5BQ96KC2 179 aa3.57□□□□□ -1.84
HMGB3-203ENST00000430118 ZIM3Q96PE6 472 aa3.57□□□□□ -1.84
HMGB3-203ENST00000430118 ZNF317Q96PQ6 595 aaPredicted RBP3.57□□□□□ -1.84
HMGB3-203ENST00000430118 CCDC77Q9BR77 488 aa3.57□□□□□ -1.84
HMGB3-203ENST00000430118 C1QTNF4Q9BXJ3 329 aa3.57□□□□□ -1.84
HMGB3-203ENST00000430118 SLC29A3Q9BZD2 475 aa3.57□□□□□ -1.84
HMGB3-203ENST00000430118 FANCEQ9HB96 536 aa3.57□□□□□ -1.84
HMGB3-203ENST00000430118 LRRC4Q9HBW1 653 aa3.57□□□□□ -1.84
HMGB3-203ENST00000430118 C12orf4Q9NQ89 552 aa3.57□□□□□ -1.84
HMGB3-203ENST00000430118 XPNPEP1Q9NQW7 623 aa3.57□□□□□ -1.84
HMGB3-203ENST00000430118 DDX28Q9NUL7 540 aaKnown RBP3.57□□□□□ -1.84
HMGB3-203ENST00000430118 TXLNGQ9NUQ3 528 aa3.57□□□□□ -1.84
HMGB3-203ENST00000430118 NMRK1Q9NWW6 199 aa3.57□□□□□ -1.84
HMGB3-203ENST00000430118 PLEK2Q9NYT0 353 aa3.57□□□□□ -1.84
HMGB3-203ENST00000430118 HACD3Q9P035 362 aa3.57□□□□□ -1.84
HMGB3-203ENST00000430118 ZNF319Q9P2F9 582 aa3.57□□□□□ -1.84
HMGB3-203ENST00000430118 LNPEPQ9UIQ6 1025 aa3.57□□□□□ -1.84
HMGB3-203ENST00000430118 ERRFI1Q9UJM3 462 aaPredicted RBP3.57□□□□□ -1.84
HMGB3-203ENST00000430118 PILRAQ9UKJ1 303 aa3.57□□□□□ -1.84
HMGB3-203ENST00000430118 ZNF490Q9ULM2 529 aaPredicted RBP3.57□□□□□ -1.84
HMGB3-203ENST00000430118 CCL26Q9Y258 94 aa3.57□□□□□ -1.84
HMGB3-203ENST00000430118 SELENOKQ9Y6D0 94 aa3.57□□□□□ -1.84
HMGB3-203ENST00000430118 PTPRBP23467 1997 aa3.56□□□□□ -1.84
HMGB3-203ENST00000430118 CFAP46Q8IYW2 2715 aa3.56□□□□□ -1.84
HMGB3-203ENST00000430118 GOLGA8IPA6NC78 632 aa3.56□□□□□ -1.84
HMGB3-203ENST00000430118 FAM172BPA6NC97 362 aa3.56□□□□□ -1.84
HMGB3-203ENST00000430118 K7ENP7 123 aa3.56□□□□□ -1.84
HMGB3-203ENST00000430118 K7ERI5 159 aa3.56□□□□□ -1.84
HMGB3-203ENST00000430118 ZNF701M0R085 212 aaPredicted RBP3.56□□□□□ -1.84
HMGB3-203ENST00000430118 POLR1CO15160 346 aaPredicted RBP3.56□□□□□ -1.84
HMGB3-203ENST00000430118 SLC22A2O15244 555 aa3.56□□□□□ -1.84
HMGB3-203ENST00000430118 P2RX6O15547 441 aa3.56□□□□□ -1.84
Retrieved 100 of 20,778 RNA–protein pairs in 341.7 ms