RNA–Protein interactions for RNA: ENST00000418501.5

USP54-203, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 4,370 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-203ENST00000418501 UBE2UQ5VVX9 321 aa7.72□□□□□ -1.17
USP54-203ENST00000418501 PWWP2BQ6NUJ5 590 aa7.72□□□□□ -1.17
USP54-203ENST00000418501 PRICKLE2Q7Z3G6 844 aa7.72□□□□□ -1.17
USP54-203ENST00000418501 GRINAQ7Z429 371 aa7.72□□□□□ -1.17
USP54-203ENST00000418501 ZNF721Q8TF20 911 aa7.72□□□□□ -1.17
USP54-203ENST00000418501 GGHQ92820 318 aa7.72□□□□□ -1.17
USP54-203ENST00000418501 SECISBP2Q96T21 854 aaKnown RBP7.72□□□□□ -1.17
USP54-203ENST00000418501 B3GNT4Q9C0J1 378 aa7.72□□□□□ -1.17
USP54-203ENST00000418501 KCNN2Q9H2S1 579 aa7.72□□□□□ -1.17
USP54-203ENST00000418501 SIAEQ9HAT2 523 aa7.72□□□□□ -1.17
USP54-203ENST00000418501 RLIMQ9NVW2 624 aa7.72□□□□□ -1.17
USP54-203ENST00000418501 CNIH4Q9P003 139 aa7.72□□□□□ -1.17
USP54-203ENST00000418501 DIMT1Q9UNQ2 313 aaKnown RBP7.72□□□□□ -1.17
USP54-203ENST00000418501 CORINQ9Y5Q5 1042 aa7.72□□□□□ -1.17
USP54-203ENST00000418501 CEPT1Q9Y6K0 416 aa7.72□□□□□ -1.17
USP54-203ENST00000418501 TRAV36DV7A0A075B6V5 113 aa7.72□□□□□ -1.17
USP54-203ENST00000418501 PRAMEF27A3QJZ7 478 aa7.72□□□□□ -1.17
USP54-203ENST00000418501 MCIDASD6RGH6 385 aa7.72□□□□□ -1.17
USP54-203ENST00000418501 CDK2AP1O14519 115 aa7.72□□□□□ -1.17
USP54-203ENST00000418501 FFAR1O14842 300 aa7.72□□□□□ -1.17
USP54-203ENST00000418501 OR7A10O76100 309 aa7.72□□□□□ -1.17
USP54-203ENST00000418501 CT45A8P0DMV1 189 aa7.72□□□□□ -1.17
USP54-203ENST00000418501 CT45A9P0DMV2 189 aa7.72□□□□□ -1.17
USP54-203ENST00000418501 APOBEC1P41238 236 aaKnown RBP7.72□□□□□ -1.17
USP54-203ENST00000418501 CDK5Q00535 292 aa7.72□□□□□ -1.17
USP54-203ENST00000418501 SEC23BQ15437 767 aa7.72□□□□□ -1.17
USP54-203ENST00000418501 MAPK11Q15759 364 aa7.72□□□□□ -1.17
USP54-203ENST00000418501 KLHL12Q53G59 568 aa7.72□□□□□ -1.17
USP54-203ENST00000418501 CT45A2Q5DJT8 189 aa7.72□□□□□ -1.17
USP54-203ENST00000418501 PDSS1Q5T2R2 415 aa7.72□□□□□ -1.17
USP54-203ENST00000418501 ZNF770Q6IQ21 691 aaPredicted RBP7.72□□□□□ -1.17
USP54-203ENST00000418501 SLC30A6Q6NXT4 461 aa7.72□□□□□ -1.17
USP54-203ENST00000418501 DOK4Q8TEW6 326 aa7.72□□□□□ -1.17
USP54-203ENST00000418501 SAMD8Q96LT4 415 aa7.72□□□□□ -1.17
USP54-203ENST00000418501 DPH1Q9BZG8 443 aa7.72□□□□□ -1.17
USP54-203ENST00000418501 WDR12Q9GZL7 423 aaKnown RBP7.72□□□□□ -1.17
USP54-203ENST00000418501 DNAJC27Q9NZQ0 273 aa7.72□□□□□ -1.17
USP54-203ENST00000418501 GRHPRQ9UBQ7 328 aa7.72□□□□□ -1.17
USP54-203ENST00000418501 A0A087WZY1 265 aa7.72□□□□□ -1.17
USP54-203ENST00000418501 A0A1W2PRG6 482 aa7.72□□□□□ -1.17
USP54-203ENST00000418501 A6NIZ1 184 aa7.72□□□□□ -1.17
USP54-203ENST00000418501 SEC14L5O43304 696 aa7.72□□□□□ -1.17
USP54-203ENST00000418501 TACSTD2P09758 323 aa7.72□□□□□ -1.17
USP54-203ENST00000418501 TFPIP10646 304 aa7.72□□□□□ -1.17
USP54-203ENST00000418501 PRG2P13727 222 aa7.72□□□□□ -1.17
USP54-203ENST00000418501 POLR2IP36954 125 aaKnown RBP7.72□□□□□ -1.17
USP54-203ENST00000418501 RAP1BP61224 184 aa7.72□□□□□ -1.17
USP54-203ENST00000418501 RAP1AP62834 184 aa7.72□□□□□ -1.17
USP54-203ENST00000418501 PMS2P3Q13401 168 aa7.72□□□□□ -1.17
USP54-203ENST00000418501 KLHL26Q53HC5 615 aa7.72□□□□□ -1.17
USP54-203ENST00000418501 ARMCX4Q5H9R4 360 aa7.72□□□□□ -1.17
USP54-203ENST00000418501 SLC35D3Q5M8T2 416 aa7.72□□□□□ -1.17
USP54-203ENST00000418501 LACC1Q8IV20 430 aa7.72□□□□□ -1.17
USP54-203ENST00000418501 POMGNT2Q8NAT1 580 aa7.72□□□□□ -1.17
USP54-203ENST00000418501 OR6S1Q8NH40 331 aa7.72□□□□□ -1.17
USP54-203ENST00000418501 STK35Q8TDR2 534 aa7.72□□□□□ -1.17
USP54-203ENST00000418501 TMEM255BQ8WV15 326 aa7.72□□□□□ -1.17
USP54-203ENST00000418501 ZBTB20Q9HC78 741 aaPredicted RBP7.72□□□□□ -1.17
USP54-203ENST00000418501 ACOT13Q9NPJ3 140 aa7.72□□□□□ -1.17
USP54-203ENST00000418501 YARS2Q9Y2Z4 477 aaKnown RBP7.72□□□□□ -1.17
USP54-203ENST00000418501 A0A087WUJ7 227 aa7.71□□□□□ -1.17
USP54-203ENST00000418501 DAPL1A0PJW8 107 aa7.71□□□□□ -1.17
USP54-203ENST00000418501 SCO2O43819 266 aa7.71□□□□□ -1.17
USP54-203ENST00000418501 GIMD1P0DJR0 217 aa7.71□□□□□ -1.17
USP54-203ENST00000418501 PEPDP12955 493 aa7.71□□□□□ -1.17
USP54-203ENST00000418501 OMPP47874 163 aa7.71□□□□□ -1.17
USP54-203ENST00000418501 ACTA2P62736 377 aa7.71□□□□□ -1.17
USP54-203ENST00000418501 ACTG2P63267 376 aa7.71□□□□□ -1.17
USP54-203ENST00000418501 HSF2Q03933 536 aa7.71□□□□□ -1.17
USP54-203ENST00000418501 EMX1Q04741 257 aaPredicted RBP7.71□□□□□ -1.17
USP54-203ENST00000418501 SNTA1Q13424 505 aa7.71□□□□□ -1.17
USP54-203ENST00000418501 NDUFAF7Q7L592 441 aa7.71□□□□□ -1.17
USP54-203ENST00000418501 HMGN2P46Q86SG4 172 aa7.71□□□□□ -1.17
USP54-203ENST00000418501 SLC25A43Q8WUT9 341 aaPredicted RBP7.71□□□□□ -1.17
USP54-203ENST00000418501 C12orf43Q96C57 262 aaKnown RBP7.71□□□□□ -1.17
USP54-203ENST00000418501 PLGRKTQ9HBL7 147 aa7.71□□□□□ -1.17
USP54-203ENST00000418501 CTSFQ9UBX1 484 aa7.71□□□□□ -1.17
USP54-203ENST00000418501 MOKQ9UQ07 419 aa7.71□□□□□ -1.17
USP54-203ENST00000418501 TMEM14AQ9Y6G1 99 aa7.71□□□□□ -1.17
USP54-203ENST00000418501 A0A1W2PS29 197 aa7.71□□□□□ -1.18
USP54-203ENST00000418501 PRAMEF25A6NGN4 478 aa7.71□□□□□ -1.18
USP54-203ENST00000418501 CENPBD1B2RD01 187 aa7.71□□□□□ -1.18
USP54-203ENST00000418501 TMCC2O75069 709 aa7.71□□□□□ -1.18
USP54-203ENST00000418501 DDAH2O95865 285 aa7.71□□□□□ -1.18
USP54-203ENST00000418501 IGKV3-11P04433 115 aa7.71□□□□□ -1.18
USP54-203ENST00000418501 HTR1FP30939 366 aa7.71□□□□□ -1.18
USP54-203ENST00000418501 SSR4P51571 173 aa7.71□□□□□ -1.18
USP54-203ENST00000418501 ISXQ2M1V0 245 aa7.71□□□□□ -1.18
USP54-203ENST00000418501 CTU2Q2VPK5 515 aaKnown RBP7.71□□□□□ -1.18
USP54-203ENST00000418501 C16orf87Q6PH81 154 aa7.71□□□□□ -1.18
USP54-203ENST00000418501 NKAIN4Q8IVV8 208 aa7.71□□□□□ -1.18
USP54-203ENST00000418501 ZDHHC19Q8WVZ1 309 aaPredicted RBP7.71□□□□□ -1.18
USP54-203ENST00000418501 LIN37Q96GY3 246 aaPredicted RBP7.71□□□□□ -1.18
USP54-203ENST00000418501 ERMAPQ96PL5 475 aaPredicted RBP7.71□□□□□ -1.18
USP54-203ENST00000418501 BARD1Q99728 777 aaKnown RBP7.71□□□□□ -1.18
USP54-203ENST00000418501 CTRCQ99895 268 aa7.71□□□□□ -1.18
USP54-203ENST00000418501 GPR87Q9BY21 358 aa7.71□□□□□ -1.18
USP54-203ENST00000418501 FKRPQ9H9S5 495 aa7.71□□□□□ -1.18
USP54-203ENST00000418501 TRIM36Q9NQ86 728 aa7.71□□□□□ -1.18
USP54-203ENST00000418501 PISDQ9UG56 409 aa7.71□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms