RNA–Protein interactions for RNA: ENST00000411423.1

SF3A1-202, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 4

Gene SF3A1, Length 548 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-202ENST00000411423 ING1Q9UK53 422 aaPredicted RBP17.02■□□□□ 0.32
SF3A1-202ENST00000411423 MCTS1Q9ULC4 181 aaKnown RBP17.02■□□□□ 0.32
SF3A1-202ENST00000411423 PROCRQ9UNN8 238 aa17.02■□□□□ 0.32
SF3A1-202ENST00000411423 FAM234BA2RU67 622 aa17.01■□□□□ 0.31
SF3A1-202ENST00000411423 HRGP04196 525 aa17.01■□□□□ 0.31
SF3A1-202ENST00000411423 ZCCHC18P0CG32 403 aa17.01■□□□□ 0.31
SF3A1-202ENST00000411423 ENPP1P22413 925 aa17.01■□□□□ 0.31
SF3A1-202ENST00000411423 AGTR1P30556 359 aa17.01■□□□□ 0.31
SF3A1-202ENST00000411423 UGT2B10P36537 528 aa17.01■□□□□ 0.31
SF3A1-202ENST00000411423 MRPL19P49406 292 aaKnown RBP17.01■□□□□ 0.31
SF3A1-202ENST00000411423 IST1P53990 364 aa17.01■□□□□ 0.31
SF3A1-202ENST00000411423 PPP2R2AP63151 447 aa17.01■□□□□ 0.31
SF3A1-202ENST00000411423 KCNJ10P78508 379 aa17.01■□□□□ 0.31
SF3A1-202ENST00000411423 LRRC74AQ0VAA2 488 aa17.01■□□□□ 0.31
SF3A1-202ENST00000411423 SELENBP1Q13228 472 aa17.01■□□□□ 0.31
SF3A1-202ENST00000411423 LRRC74BQ6ZQY2 392 aa17.01■□□□□ 0.31
SF3A1-202ENST00000411423 PLEKHM3Q6ZWE6 761 aa17.01■□□□□ 0.31
SF3A1-202ENST00000411423 OR6K3Q8NGY3 331 aa17.01■□□□□ 0.31
SF3A1-202ENST00000411423 VIPAS39Q9H9C1 493 aa17.01■□□□□ 0.31
SF3A1-202ENST00000411423 TCF7L2Q9NQB0 619 aa17.01■□□□□ 0.31
SF3A1-202ENST00000411423 ACER3Q9NUN7 267 aa17.01■□□□□ 0.31
SF3A1-202ENST00000411423 KLHL28Q9NXS3 571 aa17.01■□□□□ 0.31
SF3A1-202ENST00000411423 SLC35A3Q9Y2D2 325 aa17.01■□□□□ 0.31
SF3A1-202ENST00000411423 CCDC168Q8NDH2 2452 aa17.01■□□□□ 0.31
SF3A1-202ENST00000411423 SPG11Q96JI7 2443 aa17■□□□□ 0.31
SF3A1-202ENST00000411423 AGAP5A6NIR3 686 aa17■□□□□ 0.31
SF3A1-202ENST00000411423 HMGB1P1B2RPK0 211 aaPredicted RBP17■□□□□ 0.31
SF3A1-202ENST00000411423 POU2F1P14859 743 aa17■□□□□ 0.31
SF3A1-202ENST00000411423 RYKP34925 604 aa17■□□□□ 0.31
SF3A1-202ENST00000411423 PCYT1AP49585 367 aa17■□□□□ 0.31
SF3A1-202ENST00000411423 AQP5P55064 265 aa17■□□□□ 0.31
SF3A1-202ENST00000411423 EXOC3L2Q2M3D2 409 aa17■□□□□ 0.31
SF3A1-202ENST00000411423 PDSS1Q5T2R2 415 aa17■□□□□ 0.31
SF3A1-202ENST00000411423 ANKRD34AQ69YU3 496 aa17■□□□□ 0.31
SF3A1-202ENST00000411423 MSANTD1Q6ZTZ1 278 aa17■□□□□ 0.31
SF3A1-202ENST00000411423 NUFIP2Q7Z417 695 aaKnown RBP17■□□□□ 0.31
SF3A1-202ENST00000411423 MSRB3Q8IXL7 192 aa17■□□□□ 0.31
SF3A1-202ENST00000411423 CKAP2Q8WWK9 683 aa17■□□□□ 0.31
SF3A1-202ENST00000411423 ST8SIA1Q92185 356 aa17■□□□□ 0.31
SF3A1-202ENST00000411423 DNAJA3Q96EY1 480 aa17■□□□□ 0.31
SF3A1-202ENST00000411423 THOC1Q96FV9 657 aaKnown RBP17■□□□□ 0.31
SF3A1-202ENST00000411423 CCDC106Q9BWC9 280 aa17■□□□□ 0.31
SF3A1-202ENST00000411423 C12orf49Q9H741 205 aa17■□□□□ 0.31
SF3A1-202ENST00000411423 PLEKHF2Q9H8W4 249 aa17■□□□□ 0.31
SF3A1-202ENST00000411423 TPT1P8Q9HAU6 139 aa17■□□□□ 0.31
SF3A1-202ENST00000411423 CTPS2Q9NRF8 586 aa17■□□□□ 0.31
SF3A1-202ENST00000411423 ST6GALNAC1Q9NSC7 600 aaPredicted RBP17■□□□□ 0.31
SF3A1-202ENST00000411423 SLAMF8Q9P0V8 285 aa17■□□□□ 0.31
SF3A1-202ENST00000411423 PCDHB14Q9Y5E9 798 aa17■□□□□ 0.31
SF3A1-202ENST00000411423 DSPPQ9NZW4 1301 aa16.99■□□□□ 0.31
SF3A1-202ENST00000411423 POLR3GO15318 223 aaPredicted RBP16.99■□□□□ 0.31
SF3A1-202ENST00000411423 TGDSO95455 350 aa16.99■□□□□ 0.31
SF3A1-202ENST00000411423 PLGP00747 810 aaPredicted RBP16.99■□□□□ 0.31
SF3A1-202ENST00000411423 NUDT7P0C024 238 aa16.99■□□□□ 0.31
SF3A1-202ENST00000411423 PGCP20142 388 aa16.99■□□□□ 0.31
SF3A1-202ENST00000411423 MERTKQ12866 999 aa16.99■□□□□ 0.31
SF3A1-202ENST00000411423 RPS26P11Q5JNZ5 115 aaPredicted RBP16.99■□□□□ 0.31
SF3A1-202ENST00000411423 VRK2Q86Y07 508 aa16.99■□□□□ 0.31
SF3A1-202ENST00000411423 TUSC5Q8IXB3 177 aa16.99■□□□□ 0.31
SF3A1-202ENST00000411423 C10orf111Q8N326 155 aa16.99■□□□□ 0.31
SF3A1-202ENST00000411423 OIT3Q8WWZ8 545 aa16.99■□□□□ 0.31
SF3A1-202ENST00000411423 CPNE4Q96A23 557 aaPredicted RBP16.99■□□□□ 0.31
SF3A1-202ENST00000411423 ITCHQ96J02 903 aa16.99■□□□□ 0.31
SF3A1-202ENST00000411423 CCDC28BQ9BUN5 200 aa16.99■□□□□ 0.31
SF3A1-202ENST00000411423 RSPO3Q9BXY4 272 aaPredicted RBP16.99■□□□□ 0.31
SF3A1-202ENST00000411423 EXOSC3Q9NQT5 275 aaKnown RBP16.99■□□□□ 0.31
SF3A1-202ENST00000411423 CCM2LQ9NUG4 571 aaPredicted RBP16.99■□□□□ 0.31
SF3A1-202ENST00000411423 INTS9Q9NV88 658 aaKnown RBP16.99■□□□□ 0.31
SF3A1-202ENST00000411423 ELOVL5Q9NYP7 299 aa16.99■□□□□ 0.31
SF3A1-202ENST00000411423 SLC25A37Q9NYZ2 338 aa16.99■□□□□ 0.31
SF3A1-202ENST00000411423 C6orf203Q9P0P8 240 aaPredicted RBP16.99■□□□□ 0.31
SF3A1-202ENST00000411423 ST6GALNAC2Q9UJ37 374 aa16.99■□□□□ 0.31
SF3A1-202ENST00000411423 LIPT1Q9Y234 373 aa16.99■□□□□ 0.31
SF3A1-202ENST00000411423 PLEKHA6Q9Y2H5 1048 aa16.99■□□□□ 0.31
SF3A1-202ENST00000411423 EMC9Q9Y3B6 208 aa16.99■□□□□ 0.31
SF3A1-202ENST00000411423 CHST2Q9Y4C5 530 aa16.99■□□□□ 0.31
SF3A1-202ENST00000411423 DEFB108AA8MXU0 73 aa16.98■□□□□ 0.31
SF3A1-202ENST00000411423 SMAD9O15198 467 aaKnown RBP16.98■□□□□ 0.31
SF3A1-202ENST00000411423 ANP32DO95626 131 aa16.98■□□□□ 0.31
SF3A1-202ENST00000411423 KRT75O95678 551 aa16.98■□□□□ 0.31
SF3A1-202ENST00000411423 TFPTP0C1Z6 253 aa16.98■□□□□ 0.31
SF3A1-202ENST00000411423 NR2F1P10589 423 aa16.98■□□□□ 0.31
SF3A1-202ENST00000411423 EDNRAP25101 427 aa16.98■□□□□ 0.31
SF3A1-202ENST00000411423 CRATP43155 626 aa16.98■□□□□ 0.31
SF3A1-202ENST00000411423 KCNJ5P48544 419 aa16.98■□□□□ 0.31
SF3A1-202ENST00000411423 CTBP2P56545 445 aa16.98■□□□□ 0.31
SF3A1-202ENST00000411423 HPCAP84074 193 aa16.98■□□□□ 0.31
SF3A1-202ENST00000411423 PAGE3Q5JUK9 113 aa16.98■□□□□ 0.31
SF3A1-202ENST00000411423 C6orf10Q5SRN2 563 aa16.98■□□□□ 0.31
SF3A1-202ENST00000411423 C3orf33Q6P1S2 294 aa16.98■□□□□ 0.31
SF3A1-202ENST00000411423 FCRLAQ7L513 359 aa16.98■□□□□ 0.31
SF3A1-202ENST00000411423 DYDC1Q8WWB3 177 aa16.98■□□□□ 0.31
SF3A1-202ENST00000411423 OR5B2Q96R09 309 aa16.98■□□□□ 0.31
SF3A1-202ENST00000411423 RMND5AQ9H871 391 aa16.98■□□□□ 0.31
SF3A1-202ENST00000411423 RLIMQ9NVW2 624 aa16.98■□□□□ 0.31
SF3A1-202ENST00000411423 GJE1A6NN92 205 aa16.97■□□□□ 0.31
SF3A1-202ENST00000411423 C16orf97H3BN30 126 aa16.97■□□□□ 0.31
SF3A1-202ENST00000411423 BCHEP06276 602 aa16.97■□□□□ 0.31
SF3A1-202ENST00000411423 THBDP07204 575 aa16.97■□□□□ 0.31
SF3A1-202ENST00000411423 LOXP28300 417 aaPredicted RBP16.97■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 39.9 ms