RNA–Protein interactions for RNA: ENST00000409435.5

SCN9A-202, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN9A, Length 5,967 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-202ENST00000409435 PLA2G3Q9NZ20 509 aa6.83□□□□□ -1.32
SCN9A-202ENST00000409435 DNAJB9Q9UBS3 223 aa6.83□□□□□ -1.32
SCN9A-202ENST00000409435 TMEM59LQ9UK28 342 aa6.83□□□□□ -1.32
SCN9A-202ENST00000409435 TMEM202A6NGA9 273 aa6.83□□□□□ -1.32
SCN9A-202ENST00000409435 C11orf98E9PRG8 122 aa6.83□□□□□ -1.32
SCN9A-202ENST00000409435 HTRA2O43464 458 aaPredicted RBP6.83□□□□□ -1.32
SCN9A-202ENST00000409435 DNAJB5O75953 348 aa6.83□□□□□ -1.32
SCN9A-202ENST00000409435 CDRT1O95170 752 aa6.83□□□□□ -1.32
SCN9A-202ENST00000409435 TFPTP0C1Z6 253 aa6.83□□□□□ -1.32
SCN9A-202ENST00000409435 PRSS56P0CW18 603 aa6.83□□□□□ -1.32
SCN9A-202ENST00000409435 GABRA1P14867 456 aa6.83□□□□□ -1.32
SCN9A-202ENST00000409435 EFNA1P20827 205 aaPredicted RBP6.83□□□□□ -1.32
SCN9A-202ENST00000409435 HTR3AP46098 478 aa6.83□□□□□ -1.32
SCN9A-202ENST00000409435 EMP3P54852 163 aa6.83□□□□□ -1.32
SCN9A-202ENST00000409435 CRB2Q5IJ48 1285 aa6.83□□□□□ -1.32
SCN9A-202ENST00000409435 PIP5KL1Q5T9C9 394 aa6.83□□□□□ -1.32
SCN9A-202ENST00000409435 NOXA1Q86UR1 476 aa6.83□□□□□ -1.32
SCN9A-202ENST00000409435 SNX29P2Q8IUI4 249 aa6.83□□□□□ -1.32
SCN9A-202ENST00000409435 RNF175Q8N4F7 328 aa6.83□□□□□ -1.32
SCN9A-202ENST00000409435 TMEM185AQ8NFB2 350 aa6.83□□□□□ -1.32
SCN9A-202ENST00000409435 ANKK1Q8NFD2 765 aa6.83□□□□□ -1.32
SCN9A-202ENST00000409435 PPP1R35Q8TAP8 253 aa6.83□□□□□ -1.32
SCN9A-202ENST00000409435 KCNN1Q92952 543 aa6.83□□□□□ -1.32
SCN9A-202ENST00000409435 ISOC1Q96CN7 298 aa6.83□□□□□ -1.32
SCN9A-202ENST00000409435 SGTBQ96EQ0 304 aa6.83□□□□□ -1.32
SCN9A-202ENST00000409435 RBM24Q9BX46 236 aaKnown RBP6.83□□□□□ -1.32
SCN9A-202ENST00000409435 KCMF1Q9P0J7 381 aa6.83□□□□□ -1.32
SCN9A-202ENST00000409435 B3GALT1Q9Y5Z6 326 aa6.83□□□□□ -1.32
SCN9A-202ENST00000409435 CREG1O75629 220 aa6.82□□□□□ -1.32
SCN9A-202ENST00000409435 KCNK2O95069 426 aa6.82□□□□□ -1.32
SCN9A-202ENST00000409435 OR8U9P0C7N5 309 aa6.82□□□□□ -1.32
SCN9A-202ENST00000409435 CKMT1AP12532 417 aa6.82□□□□□ -1.32
SCN9A-202ENST00000409435 RAB3AP20336 220 aa6.82□□□□□ -1.32
SCN9A-202ENST00000409435 STT3AP46977 705 aa6.82□□□□□ -1.32
SCN9A-202ENST00000409435 PRKXP51817 358 aa6.82□□□□□ -1.32
SCN9A-202ENST00000409435 CDC20Q12834 499 aa6.82□□□□□ -1.32
SCN9A-202ENST00000409435 TCTE3Q8IZS6 198 aa6.82□□□□□ -1.32
SCN9A-202ENST00000409435 PNLDC1Q8NA58 520 aaKnown RBP6.82□□□□□ -1.32
SCN9A-202ENST00000409435 FCAMRQ8WWV6 532 aa6.82□□□□□ -1.32
SCN9A-202ENST00000409435 STON2Q8WXE9 905 aa6.82□□□□□ -1.32
SCN9A-202ENST00000409435 GCDHQ92947 438 aaPredicted RBP6.82□□□□□ -1.32
SCN9A-202ENST00000409435 SLC35A5Q9BS91 424 aa6.82□□□□□ -1.32
SCN9A-202ENST00000409435 NRSN2Q9GZP1 204 aa6.82□□□□□ -1.32
SCN9A-202ENST00000409435 SLC5A7Q9GZV3 580 aa6.82□□□□□ -1.32
SCN9A-202ENST00000409435 LACRTQ9GZZ8 138 aa6.82□□□□□ -1.32
SCN9A-202ENST00000409435 LHX9Q9NQ69 397 aa6.82□□□□□ -1.32
SCN9A-202ENST00000409435 ACSL6Q9UKU0 697 aa6.82□□□□□ -1.32
SCN9A-202ENST00000409435 RNF6Q9Y252 685 aa6.82□□□□□ -1.32
SCN9A-202ENST00000409435 RREB1Q92766 1687 aa6.82□□□□□ -1.32
SCN9A-202ENST00000409435 PPP1R2P9O14990 202 aa6.82□□□□□ -1.32
SCN9A-202ENST00000409435 CLN5O75503 358 aa6.82□□□□□ -1.32
SCN9A-202ENST00000409435 RAD51DO75771 328 aa6.82□□□□□ -1.32
SCN9A-202ENST00000409435 PTBP3O95758 552 aaKnown RBP6.82□□□□□ -1.32
SCN9A-202ENST00000409435 CLIC3O95833 236 aa6.82□□□□□ -1.32
SCN9A-202ENST00000409435 S100A8P05109 93 aa6.82□□□□□ -1.32
SCN9A-202ENST00000409435 HMGN1P05114 100 aa6.82□□□□□ -1.32
SCN9A-202ENST00000409435 MAOAP21397 527 aa6.82□□□□□ -1.32
SCN9A-202ENST00000409435 FMO3P31513 532 aa6.82□□□□□ -1.32
SCN9A-202ENST00000409435 NKX2-5P52952 324 aaPredicted RBP6.82□□□□□ -1.32
SCN9A-202ENST00000409435 HMGN3Q15651 99 aa6.82□□□□□ -1.32
SCN9A-202ENST00000409435 SPIN3Q5JUX0 258 aa6.82□□□□□ -1.32
SCN9A-202ENST00000409435 LIPNQ5VXI9 398 aa6.82□□□□□ -1.32
SCN9A-202ENST00000409435 HBMQ6B0K9 141 aa6.82□□□□□ -1.32
SCN9A-202ENST00000409435 FBXL20Q96IG2 436 aa6.82□□□□□ -1.32
SCN9A-202ENST00000409435 MRGPRX2Q96LB1 330 aa6.82□□□□□ -1.32
SCN9A-202ENST00000409435 HCAR1Q9BXC0 346 aa6.82□□□□□ -1.32
SCN9A-202ENST00000409435 DERL2Q9GZP9 239 aa6.82□□□□□ -1.32
SCN9A-202ENST00000409435 NMUR2Q9GZQ4 415 aa6.82□□□□□ -1.32
SCN9A-202ENST00000409435 FBXL4Q9UKA2 621 aa6.82□□□□□ -1.32
SCN9A-202ENST00000409435 SLC7A11Q9UPY5 501 aa6.82□□□□□ -1.32
SCN9A-202ENST00000409435 OARD1Q9Y530 152 aa6.82□□□□□ -1.32
SCN9A-202ENST00000409435 ZNF487B1APH4 448 aa6.82□□□□□ -1.32
SCN9A-202ENST00000409435 TOXO94900 526 aa6.82□□□□□ -1.32
SCN9A-202ENST00000409435 TACSTD2P09758 323 aa6.82□□□□□ -1.32
SCN9A-202ENST00000409435 CBLP22681 906 aa6.82□□□□□ -1.32
SCN9A-202ENST00000409435 MAP3K8P41279 467 aa6.82□□□□□ -1.32
SCN9A-202ENST00000409435 DPY19L4Q7Z388 723 aa6.82□□□□□ -1.32
SCN9A-202ENST00000409435 VWA5B2Q8N398 1253 aa6.82□□□□□ -1.32
SCN9A-202ENST00000409435 FAM181AQ8N9Y4 354 aa6.82□□□□□ -1.32
SCN9A-202ENST00000409435 STT3BQ8TCJ2 826 aa6.82□□□□□ -1.32
SCN9A-202ENST00000409435 SLC2A12Q8TD20 617 aa6.82□□□□□ -1.32
SCN9A-202ENST00000409435 CADM1Q9BY67 442 aaKnown RBP6.82□□□□□ -1.32
SCN9A-202ENST00000409435 OR51B6Q9H340 312 aa6.82□□□□□ -1.32
SCN9A-202ENST00000409435 IL26Q9NPH9 171 aa6.82□□□□□ -1.32
SCN9A-202ENST00000409435 C11orf16Q9NQ32 467 aa6.82□□□□□ -1.32
SCN9A-202ENST00000409435 TRIOBPQ9H2D6 2365 aa6.82□□□□□ -1.32
SCN9A-202ENST00000409435 RGPD3A6NKT7 1758 aaPredicted RBP6.82□□□□□ -1.32
SCN9A-202ENST00000409435 CPSF4LA6NMK7 179 aaKnown RBP6.82□□□□□ -1.32
SCN9A-202ENST00000409435 M0R1B8 84 aa6.82□□□□□ -1.32
SCN9A-202ENST00000409435 EIF3FO00303 357 aaPredicted RBP6.82□□□□□ -1.32
SCN9A-202ENST00000409435 SMAD9O15198 467 aaKnown RBP6.82□□□□□ -1.32
SCN9A-202ENST00000409435 MPPED1O15442 326 aa6.82□□□□□ -1.32
SCN9A-202ENST00000409435 TIMM8AO60220 97 aaPredicted RBP6.82□□□□□ -1.32
SCN9A-202ENST00000409435 IL3P08700 152 aa6.82□□□□□ -1.32
SCN9A-202ENST00000409435 ENPP1P22413 925 aa6.82□□□□□ -1.32
SCN9A-202ENST00000409435 GDF5P43026 501 aa6.82□□□□□ -1.32
SCN9A-202ENST00000409435 ZNF763Q0D2J5 394 aa6.82□□□□□ -1.32
SCN9A-202ENST00000409435 LSAMPQ13449 338 aa6.82□□□□□ -1.32
SCN9A-202ENST00000409435 DAG1Q14118 895 aa6.82□□□□□ -1.32
SCN9A-202ENST00000409435 RABL3Q5HYI8 236 aa6.82□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms