RNA–Protein interactions for RNA: ENST00000401394.5

CTCF-202, Transcript of CCCTC-binding factor, humanhuman

TSL 1 (best) BASIC

Gene CTCF, Length 2,978 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTCF-202ENST00000401394 MRPS30Q9NP92 439 aaKnown RBP19.43■□□□□ 0.7
CTCF-202ENST00000401394 ALDOBP05062 364 aa19.42■□□□□ 0.7
CTCF-202ENST00000401394 ASGR2P07307 311 aa19.42■□□□□ 0.7
CTCF-202ENST00000401394 PRR5P85299 388 aa19.42■□□□□ 0.7
CTCF-202ENST00000401394 ACSM1Q08AH1 577 aa19.42■□□□□ 0.7
CTCF-202ENST00000401394 KIAA1324Q6UXG2 1013 aaKnown RBP19.42■□□□□ 0.7
CTCF-202ENST00000401394 NHLRC1Q6VVB1 395 aa19.42■□□□□ 0.7
CTCF-202ENST00000401394 CXorf40AQ8TE69 158 aa19.42■□□□□ 0.7
CTCF-202ENST00000401394 PMEPA1Q969W9 287 aa19.42■□□□□ 0.7
CTCF-202ENST00000401394 CAMK1GQ96NX5 476 aa19.42■□□□□ 0.7
CTCF-202ENST00000401394 ADGRL4Q9HBW9 690 aa19.42■□□□□ 0.7
CTCF-202ENST00000401394 MEPEQ9NQ76 525 aaPredicted RBP19.42■□□□□ 0.7
CTCF-202ENST00000401394 ACOD1A6NK06 481 aa19.42■□□□□ 0.7
CTCF-202ENST00000401394 ADH5P11766 374 aa19.42■□□□□ 0.7
CTCF-202ENST00000401394 NUDT1P36639 197 aa19.42■□□□□ 0.7
CTCF-202ENST00000401394 RAD52P43351 418 aa19.42■□□□□ 0.7
CTCF-202ENST00000401394 MAP2K6P52564 334 aa19.42■□□□□ 0.7
CTCF-202ENST00000401394 MLC1Q15049 377 aa19.42■□□□□ 0.7
CTCF-202ENST00000401394 LUZP2Q86TE4 346 aa19.42■□□□□ 0.7
CTCF-202ENST00000401394 ZNF433Q8N7K0 673 aaPredicted RBP19.42■□□□□ 0.7
CTCF-202ENST00000401394 SDR9C7Q8NEX9 313 aa19.42■□□□□ 0.7
CTCF-202ENST00000401394 PPP1R16AQ96I34 528 aa19.42■□□□□ 0.7
CTCF-202ENST00000401394 NDC1Q9BTX1 674 aa19.42■□□□□ 0.7
CTCF-202ENST00000401394 RANBP3Q9H6Z4 567 aaPredicted RBP19.42■□□□□ 0.7
CTCF-202ENST00000401394 LDB3O75112 727 aa19.41■□□□□ 0.7
CTCF-202ENST00000401394 TFP02787 698 aa19.41■□□□□ 0.7
CTCF-202ENST00000401394 PRNPP04156 253 aa19.41■□□□□ 0.7
CTCF-202ENST00000401394 GDNFP39905 211 aa19.41■□□□□ 0.7
CTCF-202ENST00000401394 ZNF234Q14588 700 aa19.41■□□□□ 0.7
CTCF-202ENST00000401394 ZMYND11Q15326 602 aa19.41■□□□□ 0.7
CTCF-202ENST00000401394 CDC73Q6P1J9 531 aa19.41■□□□□ 0.7
CTCF-202ENST00000401394 ZNF782Q6ZMW2 699 aaPredicted RBP19.41■□□□□ 0.7
CTCF-202ENST00000401394 LINGO2Q7L985 606 aa19.41■□□□□ 0.7
CTCF-202ENST00000401394 LSMEM1Q8N8F7 131 aa19.41■□□□□ 0.7
CTCF-202ENST00000401394 OR52E1Q8NGJ3 308 aa19.41■□□□□ 0.7
CTCF-202ENST00000401394 OR52B4Q8NGK2 314 aa19.41■□□□□ 0.7
CTCF-202ENST00000401394 LINC00052Q96N35 136 aa19.41■□□□□ 0.7
CTCF-202ENST00000401394 TNFRSF13CQ96RJ3 184 aa19.41■□□□□ 0.7
CTCF-202ENST00000401394 EMC7Q9NPA0 242 aa19.41■□□□□ 0.7
CTCF-202ENST00000401394 KLHL28Q9NXS3 571 aa19.41■□□□□ 0.7
CTCF-202ENST00000401394 PRR23D1E9PI22 279 aaPredicted RBP19.41■□□□□ 0.7
CTCF-202ENST00000401394 SIX6O95475 246 aa19.41■□□□□ 0.7
CTCF-202ENST00000401394 PRR23D2P0DMB1 279 aaPredicted RBP19.41■□□□□ 0.7
CTCF-202ENST00000401394 MPIP34949 423 aa19.41■□□□□ 0.7
CTCF-202ENST00000401394 PLAURQ03405 335 aa19.41■□□□□ 0.7
CTCF-202ENST00000401394 MRPL2Q5T653 305 aaKnown RBP19.41■□□□□ 0.7
CTCF-202ENST00000401394 PYHIN1Q6K0P9 492 aa19.41■□□□□ 0.7
CTCF-202ENST00000401394 C12orf76Q8N812 135 aaPredicted RBP19.41■□□□□ 0.7
CTCF-202ENST00000401394 OR11G2Q8NGC1 345 aa19.41■□□□□ 0.7
CTCF-202ENST00000401394 OR4K13Q8NH42 304 aa19.41■□□□□ 0.7
CTCF-202ENST00000401394 AHCYL2Q96HN2 611 aaKnown RBP19.41■□□□□ 0.7
CTCF-202ENST00000401394 CXorf58Q96LI9 332 aa19.41■□□□□ 0.7
CTCF-202ENST00000401394 CD180Q99467 661 aa19.41■□□□□ 0.7
CTCF-202ENST00000401394 POT1Q9NUX5 634 aa19.41■□□□□ 0.7
CTCF-202ENST00000401394 RDH8Q9NYR8 311 aa19.41■□□□□ 0.7
CTCF-202ENST00000401394 CLEC3AO75596 197 aa19.41■□□□□ 0.7
CTCF-202ENST00000401394 SBK2P0C263 348 aa19.41■□□□□ 0.7
CTCF-202ENST00000401394 ANXA7P20073 488 aaKnown RBP19.41■□□□□ 0.7
CTCF-202ENST00000401394 BLVRAP53004 296 aa19.41■□□□□ 0.7
CTCF-202ENST00000401394 BTN1A1Q13410 526 aa19.41■□□□□ 0.7
CTCF-202ENST00000401394 RTL4Q6ZR62 310 aa19.41■□□□□ 0.7
CTCF-202ENST00000401394 CMTM4Q8IZR5 234 aa19.41■□□□□ 0.7
CTCF-202ENST00000401394 SLC44A3Q8N4M1 653 aa19.41■□□□□ 0.7
CTCF-202ENST00000401394 ZNF671Q8TAW3 534 aa19.41■□□□□ 0.7
CTCF-202ENST00000401394 ACOT12Q8WYK0 555 aa19.41■□□□□ 0.7
CTCF-202ENST00000401394 RELTQ969Z4 430 aa19.41■□□□□ 0.7
CTCF-202ENST00000401394 CAPNS2Q96L46 248 aa19.41■□□□□ 0.7
CTCF-202ENST00000401394 NFATC1O95644 943 aa19.4■□□□□ 0.7
CTCF-202ENST00000401394 MT-ND5P03915 603 aa19.4■□□□□ 0.7
CTCF-202ENST00000401394 BMP7P18075 431 aa19.4■□□□□ 0.7
CTCF-202ENST00000401394 LAG3P18627 525 aa19.4■□□□□ 0.7
CTCF-202ENST00000401394 TSPAN5P62079 268 aa19.4■□□□□ 0.7
CTCF-202ENST00000401394 PLA2G7Q13093 441 aa19.4■□□□□ 0.7
CTCF-202ENST00000401394 OR1Q1Q15612 314 aa19.4■□□□□ 0.7
CTCF-202ENST00000401394 DEFB134Q4QY38 66 aa19.4■□□□□ 0.7
CTCF-202ENST00000401394 MRM1Q6IN84 353 aaKnown RBP19.4■□□□□ 0.7
CTCF-202ENST00000401394 OR56A1Q8NGH5 318 aa19.4■□□□□ 0.7
CTCF-202ENST00000401394 DNAJA3Q96EY1 480 aa19.4■□□□□ 0.7
CTCF-202ENST00000401394 ZNF514Q96K75 400 aaPredicted RBP19.4■□□□□ 0.7
CTCF-202ENST00000401394 HS6ST2Q96MM7 605 aa19.4■□□□□ 0.7
CTCF-202ENST00000401394 C1QTNF2Q9BXJ5 285 aa19.4■□□□□ 0.7
CTCF-202ENST00000401394 C20orf85Q9H1P6 137 aa19.4■□□□□ 0.7
CTCF-202ENST00000401394 PRKNO60260 465 aaPredicted RBP19.4■□□□□ 0.7
CTCF-202ENST00000401394 OR5F1O95221 314 aa19.4■□□□□ 0.7
CTCF-202ENST00000401394 EML2O95834 649 aa19.4■□□□□ 0.7
CTCF-202ENST00000401394 EPXP11678 715 aa19.4■□□□□ 0.7
CTCF-202ENST00000401394 MAT2AP31153 395 aaKnown RBP19.4■□□□□ 0.7
CTCF-202ENST00000401394 SLC25A25Q6KCM7 469 aa19.4■□□□□ 0.7
CTCF-202ENST00000401394 PRSS41Q7RTY9 318 aa19.4■□□□□ 0.7
CTCF-202ENST00000401394 OR4E2Q8NGC2 313 aa19.4■□□□□ 0.7
CTCF-202ENST00000401394 COX14Q96I36 57 aa19.4■□□□□ 0.7
CTCF-202ENST00000401394 NUBP2Q9Y5Y2 271 aa19.4■□□□□ 0.7
CTCF-202ENST00000401394 F5P12259 2224 aa19.39■□□□□ 0.7
CTCF-202ENST00000401394 TCRBV16S1A1N1A0A5B0 115 aa19.39■□□□□ 0.7
CTCF-202ENST00000401394 CACNB4O00305 520 aaPredicted RBP19.39■□□□□ 0.7
CTCF-202ENST00000401394 ARPC1BO15143 372 aaKnown RBP19.39■□□□□ 0.7
CTCF-202ENST00000401394 PLPP2O43688 288 aa19.39■□□□□ 0.7
CTCF-202ENST00000401394 VEGFDO43915 354 aa19.39■□□□□ 0.7
CTCF-202ENST00000401394 NGFRP08138 427 aa19.39■□□□□ 0.7
CTCF-202ENST00000401394 UCHL1P09936 223 aa19.39■□□□□ 0.7
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms