RNA–Protein interactions for RNA: ENST00000375299.7

UPF3A-202, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF3A, Length 2,387 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-202ENST00000375299 SMAD5Q99717 465 aaKnown RBP19.59■□□□□ 0.73
UPF3A-202ENST00000375299 C20orf141Q9NUB4 165 aa19.59■□□□□ 0.73
UPF3A-202ENST00000375299 ST6GALNAC2Q9UJ37 374 aa19.59■□□□□ 0.73
UPF3A-202ENST00000375299 LAMA3Q16787 3333 aa19.59■□□□□ 0.73
UPF3A-202ENST00000375299 SERPINA3P01011 423 aa19.59■□□□□ 0.73
UPF3A-202ENST00000375299 PRG2P13727 222 aa19.59■□□□□ 0.73
UPF3A-202ENST00000375299 IL9P15248 144 aa19.59■□□□□ 0.73
UPF3A-202ENST00000375299 PYCR1P32322 319 aa19.59■□□□□ 0.73
UPF3A-202ENST00000375299 TCTE1Q5JU00 501 aa19.59■□□□□ 0.73
UPF3A-202ENST00000375299 WDR88Q6ZMY6 472 aa19.59■□□□□ 0.73
UPF3A-202ENST00000375299 Q6ZTK2 550 aa19.59■□□□□ 0.73
UPF3A-202ENST00000375299 SMAP2Q8WU79 429 aaPredicted RBP19.59■□□□□ 0.73
UPF3A-202ENST00000375299 ORAI3Q9BRQ5 295 aa19.59■□□□□ 0.73
UPF3A-202ENST00000375299 IFT27Q9BW83 186 aa19.59■□□□□ 0.73
UPF3A-202ENST00000375299 WDR26Q9H7D7 661 aa19.59■□□□□ 0.73
UPF3A-202ENST00000375299 MTHFD2LQ9H903 347 aaPredicted RBP19.59■□□□□ 0.73
UPF3A-202ENST00000375299 LIN7BQ9HAP6 207 aa19.59■□□□□ 0.73
UPF3A-202ENST00000375299 HCN3Q9P1Z3 774 aa19.59■□□□□ 0.73
UPF3A-202ENST00000375299 SCML1Q9UN30 329 aa19.59■□□□□ 0.73
UPF3A-202ENST00000375299 FLVCR2Q9UPI3 526 aa19.59■□□□□ 0.73
UPF3A-202ENST00000375299 WDR45Q9Y484 360 aa19.59■□□□□ 0.73
UPF3A-202ENST00000375299 A0A1W2PPK0 400 aa19.58■□□□□ 0.73
UPF3A-202ENST00000375299 TRAPPC13A5PLN9 417 aa19.58■□□□□ 0.73
UPF3A-202ENST00000375299 DUXAA6NLW8 204 aa19.58■□□□□ 0.73
UPF3A-202ENST00000375299 RCBTB2O95199 551 aa19.58■□□□□ 0.73
UPF3A-202ENST00000375299 ACSM4P0C7M7 580 aa19.58■□□□□ 0.73
UPF3A-202ENST00000375299 HOXB3P14651 431 aaPredicted RBP19.58■□□□□ 0.73
UPF3A-202ENST00000375299 ZP3P21754 424 aa19.58■□□□□ 0.73
UPF3A-202ENST00000375299 DDX6P26196 483 aaKnown RBP eCLIP19.58■□□□□ 0.73
UPF3A-202ENST00000375299 GBX2P52951 348 aaPredicted RBP19.58■□□□□ 0.73
UPF3A-202ENST00000375299 FAM111BQ6SJ93 734 aa19.58■□□□□ 0.73
UPF3A-202ENST00000375299 THSD4Q6ZMP0 1018 aa19.58■□□□□ 0.73
UPF3A-202ENST00000375299 ASPGQ86U10 573 aa19.58■□□□□ 0.73
UPF3A-202ENST00000375299 RANBP3LQ86VV4 465 aaPredicted RBP19.58■□□□□ 0.73
UPF3A-202ENST00000375299 IZUMO1Q8IYV9 350 aa19.58■□□□□ 0.73
UPF3A-202ENST00000375299 SLC16A11Q8NCK7 471 aa19.58■□□□□ 0.73
UPF3A-202ENST00000375299 OR2L5Q8NG80 312 aa19.58■□□□□ 0.73
UPF3A-202ENST00000375299 OR11G2Q8NGC1 345 aa19.58■□□□□ 0.73
UPF3A-202ENST00000375299 TMEM239Q8WW34 195 aa19.58■□□□□ 0.73
UPF3A-202ENST00000375299 LCORQ96JN0 433 aaPredicted RBP19.58■□□□□ 0.73
UPF3A-202ENST00000375299 FERD3LQ96RJ6 166 aa19.58■□□□□ 0.73
UPF3A-202ENST00000375299 XKR8Q9H6D3 395 aa19.58■□□□□ 0.73
UPF3A-202ENST00000375299 C12orf4Q9NQ89 552 aa19.58■□□□□ 0.73
UPF3A-202ENST00000375299 ZNF780BQ9Y6R6 833 aa19.58■□□□□ 0.73
UPF3A-202ENST00000375299 PDE4DIPQ5VU43 2346 aa19.58■□□□□ 0.73
UPF3A-202ENST00000375299 GMDSO60547 372 aa19.58■□□□□ 0.72
UPF3A-202ENST00000375299 ASGR2P07307 311 aa19.58■□□□□ 0.72
UPF3A-202ENST00000375299 CISD3P0C7P0 127 aa19.58■□□□□ 0.72
UPF3A-202ENST00000375299 C4BPBP20851 252 aa19.58■□□□□ 0.72
UPF3A-202ENST00000375299 NT5EP21589 574 aa19.58■□□□□ 0.72
UPF3A-202ENST00000375299 SLC2A5P22732 501 aa19.58■□□□□ 0.72
UPF3A-202ENST00000375299 NOS3P29474 1203 aa19.58■□□□□ 0.72
UPF3A-202ENST00000375299 CCR9P51686 369 aa19.58■□□□□ 0.72
UPF3A-202ENST00000375299 TMEM52BQ4KMG9 183 aa19.58■□□□□ 0.72
UPF3A-202ENST00000375299 SFRP4Q6FHJ7 346 aaPredicted RBP19.58■□□□□ 0.72
UPF3A-202ENST00000375299 RPL13AP3Q6NVV1 102 aa19.58■□□□□ 0.72
UPF3A-202ENST00000375299 KANSL1Q7Z3B3 1105 aa19.58■□□□□ 0.72
UPF3A-202ENST00000375299 RNF113BQ8IZP6 322 aaKnown RBP19.58■□□□□ 0.72
UPF3A-202ENST00000375299 TMIEQ8NEW7 156 aa19.58■□□□□ 0.72
UPF3A-202ENST00000375299 RNF208Q9H0X6 261 aa19.58■□□□□ 0.72
UPF3A-202ENST00000375299 C6orf106Q9H6K1 298 aaPredicted RBP19.58■□□□□ 0.72
UPF3A-202ENST00000375299 CLDND1Q9NY35 253 aa19.58■□□□□ 0.72
UPF3A-202ENST00000375299 CLUP10909 449 aa19.57■□□□□ 0.72
UPF3A-202ENST00000375299 MNX1P50219 401 aaPredicted RBP19.57■□□□□ 0.72
UPF3A-202ENST00000375299 ACTC1P68032 377 aa19.57■□□□□ 0.72
UPF3A-202ENST00000375299 EEF1A1P68104 462 aaKnown RBP19.57■□□□□ 0.72
UPF3A-202ENST00000375299 ACTA1P68133 377 aa19.57■□□□□ 0.72
UPF3A-202ENST00000375299 EIPR1Q53HC9 387 aa19.57■□□□□ 0.72
UPF3A-202ENST00000375299 NHLRC3Q5JS37 347 aa19.57■□□□□ 0.72
UPF3A-202ENST00000375299 UBE2NLQ5JXB2 153 aa19.57■□□□□ 0.72
UPF3A-202ENST00000375299 FAAH2Q6GMR7 532 aa19.57■□□□□ 0.72
UPF3A-202ENST00000375299 MFSD12Q6NUT3 480 aa19.57■□□□□ 0.72
UPF3A-202ENST00000375299 ADAMTSL4Q6UY14 1074 aa19.57■□□□□ 0.72
UPF3A-202ENST00000375299 SSX6Q7RTT6 188 aa19.57■□□□□ 0.72
UPF3A-202ENST00000375299 LGALS14Q8TCE9 139 aa19.57■□□□□ 0.72
UPF3A-202ENST00000375299 OR8D1Q8WZ84 308 aa19.57■□□□□ 0.72
UPF3A-202ENST00000375299 HRASLSQ9HDD0 168 aa19.57■□□□□ 0.72
UPF3A-202ENST00000375299 MRPL15Q9P015 296 aaKnown RBP19.57■□□□□ 0.72
UPF3A-202ENST00000375299 RCE1Q9Y256 329 aa19.57■□□□□ 0.72
UPF3A-202ENST00000375299 PCDHGA9Q9Y5G4 932 aaKnown RBP19.57■□□□□ 0.72
UPF3A-202ENST00000375299 CENPVL1A0A0U1RR11 272 aa19.57■□□□□ 0.72
UPF3A-202ENST00000375299 ARL6IP5O75915 188 aa19.57■□□□□ 0.72
UPF3A-202ENST00000375299 VEGFCP49767 419 aa19.57■□□□□ 0.72
UPF3A-202ENST00000375299 DHODHQ02127 395 aa19.57■□□□□ 0.72
UPF3A-202ENST00000375299 METTL11BQ5VVY1 283 aa19.57■□□□□ 0.72
UPF3A-202ENST00000375299 FCRLBQ6BAA4 426 aa19.57■□□□□ 0.72
UPF3A-202ENST00000375299 FAM71CQ8NEG0 241 aa19.57■□□□□ 0.72
UPF3A-202ENST00000375299 PEX11GQ96HA9 241 aa19.57■□□□□ 0.72
UPF3A-202ENST00000375299 AIFM2Q9BRQ8 373 aa19.57■□□□□ 0.72
UPF3A-202ENST00000375299 CHIAQ9BZP6 476 aa19.57■□□□□ 0.72
UPF3A-202ENST00000375299 PLEKHA1Q9HB21 404 aa19.57■□□□□ 0.72
UPF3A-202ENST00000375299 NPDC1Q9NQX5 325 aaPredicted RBP19.57■□□□□ 0.72
UPF3A-202ENST00000375299 NANSQ9NR45 359 aa19.57■□□□□ 0.72
UPF3A-202ENST00000375299 SLC35A3Q9Y2D2 325 aa19.57■□□□□ 0.72
UPF3A-202ENST00000375299 HCFC2Q9Y5Z7 792 aa19.57■□□□□ 0.72
UPF3A-202ENST00000375299 A0A1B0GUH1 482 aa19.56■□□□□ 0.72
UPF3A-202ENST00000375299 TSPAN4O14817 238 aa19.56■□□□□ 0.72
UPF3A-202ENST00000375299 TFP02787 698 aa19.56■□□□□ 0.72
UPF3A-202ENST00000375299 CLTBP09497 229 aa19.56■□□□□ 0.72
UPF3A-202ENST00000375299 PSMB1P20618 241 aaKnown RBP19.56■□□□□ 0.72
Retrieved 100 of 20,778 RNA–protein pairs in 36 ms