RNA–Protein interactions for RNA: ENST00000359902.2

CCDC88B-203, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best) BASIC

Gene CCDC88B, Length 2,326 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-203ENST00000359902 NPIPB9F8W1W9 429 aa19.19■□□□□ 0.66
CCDC88B-203ENST00000359902 HPGDSO60760 199 aa19.19■□□□□ 0.66
CCDC88B-203ENST00000359902 SLC16A1P53985 500 aa19.19■□□□□ 0.66
CCDC88B-203ENST00000359902 RPS7P62081 194 aaKnown RBP19.19■□□□□ 0.66
CCDC88B-203ENST00000359902 FAM53BQ14153 422 aa19.19■□□□□ 0.66
CCDC88B-203ENST00000359902 CRMP1Q14194 572 aa19.19■□□□□ 0.66
CCDC88B-203ENST00000359902 ZNF267Q14586 743 aaPredicted RBP19.19■□□□□ 0.66
CCDC88B-203ENST00000359902 ZNF141Q15928 474 aa19.19■□□□□ 0.66
CCDC88B-203ENST00000359902 ZNF595Q8IYB9 648 aa19.19■□□□□ 0.66
CCDC88B-203ENST00000359902 NLGN4YQ8NFZ3 816 aaPredicted RBP19.19■□□□□ 0.66
CCDC88B-203ENST00000359902 RNF32Q9H0A6 362 aa19.19■□□□□ 0.66
CCDC88B-203ENST00000359902 MCCC2Q9HCC0 563 aa19.19■□□□□ 0.66
CCDC88B-203ENST00000359902 NPAP1Q9NZP6 1156 aa19.19■□□□□ 0.66
CCDC88B-203ENST00000359902 RGS9O75916 674 aaPredicted RBP19.19■□□□□ 0.66
CCDC88B-203ENST00000359902 PEPDP12955 493 aa19.19■□□□□ 0.66
CCDC88B-203ENST00000359902 HTR3AP46098 478 aa19.19■□□□□ 0.66
CCDC88B-203ENST00000359902 MADCAM1Q13477 382 aa19.19■□□□□ 0.66
CCDC88B-203ENST00000359902 FGFBP1Q14512 234 aa19.19■□□□□ 0.66
CCDC88B-203ENST00000359902 CYB561A3Q8NBI2 242 aa19.19■□□□□ 0.66
CCDC88B-203ENST00000359902 TCTN2Q96GX1 697 aa19.19■□□□□ 0.66
CCDC88B-203ENST00000359902 SENP5Q96HI0 755 aaPredicted RBP19.19■□□□□ 0.66
CCDC88B-203ENST00000359902 PRTFDC1Q9NRG1 225 aa19.19■□□□□ 0.66
CCDC88B-203ENST00000359902 INPP5EQ9NRR6 644 aa19.19■□□□□ 0.66
CCDC88B-203ENST00000359902 FBXL4Q9UKA2 621 aa19.19■□□□□ 0.66
CCDC88B-203ENST00000359902 BAIAP2Q9UQB8 552 aa19.19■□□□□ 0.66
CCDC88B-203ENST00000359902 MRPS33Q9Y291 106 aaKnown RBP19.19■□□□□ 0.66
CCDC88B-203ENST00000359902 MRPL3P09001 348 aaKnown RBP19.18■□□□□ 0.66
CCDC88B-203ENST00000359902 SBK2P0C263 348 aa19.18■□□□□ 0.66
CCDC88B-203ENST00000359902 SPTBP11277 2137 aa19.18■□□□□ 0.66
CCDC88B-203ENST00000359902 HK1P19367 917 aa19.18■□□□□ 0.66
CCDC88B-203ENST00000359902 GPR3P46089 330 aa19.18■□□□□ 0.66
CCDC88B-203ENST00000359902 CNIH2Q6PI25 160 aa19.18■□□□□ 0.66
CCDC88B-203ENST00000359902 ARL14Q8N4G2 192 aa19.18■□□□□ 0.66
CCDC88B-203ENST00000359902 PPP1R3EQ9H7J1 279 aa19.18■□□□□ 0.66
CCDC88B-203ENST00000359902 ADGRL4Q9HBW9 690 aa19.18■□□□□ 0.66
CCDC88B-203ENST00000359902 POU2F3Q9UKI9 436 aa19.18■□□□□ 0.66
CCDC88B-203ENST00000359902 GON4LQ3T8J9 2241 aa19.18■□□□□ 0.66
CCDC88B-203ENST00000359902 E9PI62 339 aa19.18■□□□□ 0.66
CCDC88B-203ENST00000359902 CT45A8P0DMV1 189 aa19.18■□□□□ 0.66
CCDC88B-203ENST00000359902 CT45A9P0DMV2 189 aa19.18■□□□□ 0.66
CCDC88B-203ENST00000359902 ZNF3P17036 446 aa19.18■□□□□ 0.66
CCDC88B-203ENST00000359902 NUDT1P36639 197 aa19.18■□□□□ 0.66
CCDC88B-203ENST00000359902 EVX1P49640 407 aa19.18■□□□□ 0.66
CCDC88B-203ENST00000359902 SKP1P63208 163 aa19.18■□□□□ 0.66
CCDC88B-203ENST00000359902 DAB2P98082 770 aa19.18■□□□□ 0.66
CCDC88B-203ENST00000359902 COL19A1Q14993 1142 aa19.18■□□□□ 0.66
CCDC88B-203ENST00000359902 CT45A2Q5DJT8 189 aa19.18■□□□□ 0.66
CCDC88B-203ENST00000359902 ZNF517Q6ZMY9 492 aaPredicted RBP19.18■□□□□ 0.66
CCDC88B-203ENST00000359902 RAB43Q86YS6 212 aa19.18■□□□□ 0.66
CCDC88B-203ENST00000359902 OR5W2Q8NH69 310 aa19.18■□□□□ 0.66
CCDC88B-203ENST00000359902 AHCYL2Q96HN2 611 aaKnown RBP19.18■□□□□ 0.66
CCDC88B-203ENST00000359902 DGAT2Q96PD7 388 aa19.18■□□□□ 0.66
CCDC88B-203ENST00000359902 TRIM36Q9NQ86 728 aa19.18■□□□□ 0.66
CCDC88B-203ENST00000359902 MAOAP21397 527 aa19.17■□□□□ 0.66
CCDC88B-203ENST00000359902 APEX1P27695 318 aaKnown RBP19.17■□□□□ 0.66
CCDC88B-203ENST00000359902 CRYZQ08257 329 aaKnown RBP19.17■□□□□ 0.66
CCDC88B-203ENST00000359902 ULK3Q6PHR2 472 aa19.17■□□□□ 0.66
CCDC88B-203ENST00000359902 KIRREL2Q6UWL6 708 aa19.17■□□□□ 0.66
CCDC88B-203ENST00000359902 ZNF550Q7Z398 422 aa19.17■□□□□ 0.66
CCDC88B-203ENST00000359902 CADM2Q8N3J6 435 aa19.17■□□□□ 0.66
CCDC88B-203ENST00000359902 SLC22A4Q9H015 551 aa19.17■□□□□ 0.66
CCDC88B-203ENST00000359902 C11orf54Q9H0W9 315 aaPredicted RBP19.17■□□□□ 0.66
CCDC88B-203ENST00000359902 Q9N2J8 555 aa19.17■□□□□ 0.66
CCDC88B-203ENST00000359902 LRIT1Q9P2V4 623 aa19.17■□□□□ 0.66
CCDC88B-203ENST00000359902 TMEM131Q92545 1883 aa19.17■□□□□ 0.66
CCDC88B-203ENST00000359902 CLDN4O14493 209 aa19.17■□□□□ 0.66
CCDC88B-203ENST00000359902 PRAMEF2O60811 474 aa19.17■□□□□ 0.66
CCDC88B-203ENST00000359902 CCNKO75909 580 aa19.17■□□□□ 0.66
CCDC88B-203ENST00000359902 NSA2O95478 260 aaKnown RBP19.17■□□□□ 0.66
CCDC88B-203ENST00000359902 MT-ND5P03915 603 aa19.17■□□□□ 0.66
CCDC88B-203ENST00000359902 SLC6A6P31641 620 aa19.17■□□□□ 0.66
CCDC88B-203ENST00000359902 CAPZBP47756 277 aa19.17■□□□□ 0.66
CCDC88B-203ENST00000359902 FASLGP48023 281 aa19.17■□□□□ 0.66
CCDC88B-203ENST00000359902 ATP12AP54707 1039 aa19.17■□□□□ 0.66
CCDC88B-203ENST00000359902 NNATQ16517 81 aa19.17■□□□□ 0.66
CCDC88B-203ENST00000359902 CCDC92Q53HC0 331 aaPredicted RBP19.17■□□□□ 0.66
CCDC88B-203ENST00000359902 ZNF544Q6NX49 715 aa19.17■□□□□ 0.66
CCDC88B-203ENST00000359902 SYT13Q7L8C5 426 aa19.17■□□□□ 0.66
CCDC88B-203ENST00000359902 SMAP2Q8WU79 429 aaPredicted RBP19.17■□□□□ 0.66
CCDC88B-203ENST00000359902 HOXD1Q9GZZ0 328 aa19.17■□□□□ 0.66
CCDC88B-203ENST00000359902 KCNN2Q9H2S1 579 aa19.17■□□□□ 0.66
CCDC88B-203ENST00000359902 WDR70Q9NW82 654 aa19.17■□□□□ 0.66
CCDC88B-203ENST00000359902 HAO2Q9NYQ3 351 aa19.17■□□□□ 0.66
CCDC88B-203ENST00000359902 ZMIZ1Q9ULJ6 1067 aa19.17■□□□□ 0.66
CCDC88B-203ENST00000359902 BLACEA4D250 179 aa19.16■□□□□ 0.66
CCDC88B-203ENST00000359902 PLA2G10O15496 165 aa19.16■□□□□ 0.66
CCDC88B-203ENST00000359902 WNT1P04628 370 aa19.16■□□□□ 0.66
CCDC88B-203ENST00000359902 GYPBP06028 91 aa19.16■□□□□ 0.66
CCDC88B-203ENST00000359902 PROS1P07225 676 aa19.16■□□□□ 0.66
CCDC88B-203ENST00000359902 CFL1P23528 166 aaKnown RBP19.16■□□□□ 0.66
CCDC88B-203ENST00000359902 ZNF800Q2TB10 664 aaPredicted RBP eCLIP19.16■□□□□ 0.66
CCDC88B-203ENST00000359902 NR2C2APQ86WQ0 139 aa19.16■□□□□ 0.66
CCDC88B-203ENST00000359902 OR6C4Q8NGE1 309 aa19.16■□□□□ 0.66
CCDC88B-203ENST00000359902 C16orf52Q8NHV5 167 aa19.16■□□□□ 0.66
CCDC88B-203ENST00000359902 EFHD2Q96C19 240 aaPredicted RBP19.16■□□□□ 0.66
CCDC88B-203ENST00000359902 NDC1Q9BTX1 674 aa19.16■□□□□ 0.66
CCDC88B-203ENST00000359902 G6PC3Q9BUM1 346 aa19.16■□□□□ 0.66
CCDC88B-203ENST00000359902 ZNF576Q9H609 170 aa19.16■□□□□ 0.66
CCDC88B-203ENST00000359902 SERTAD3Q9UJW9 196 aa19.16■□□□□ 0.66
CCDC88B-203ENST00000359902 MTCH2Q9Y6C9 303 aa19.16■□□□□ 0.66
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms