RNA–Protein interactions for RNA: ENST00000355477.10

CLN3-202, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,173 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-202ENST00000355477 SLC39A3Q9BRY0 314 aa16.42■□□□□ 0.22
CLN3-202ENST00000355477 KLHL28Q9NXS3 571 aa16.42■□□□□ 0.22
CLN3-202ENST00000355477 NDRG3Q9UGV2 375 aa16.42■□□□□ 0.22
CLN3-202ENST00000355477 LIPT1Q9Y234 373 aa16.42■□□□□ 0.22
CLN3-202ENST00000355477 EMC9Q9Y3B6 208 aa16.42■□□□□ 0.22
CLN3-202ENST00000355477 A0A1W2PNR3 127 aa16.41■□□□□ 0.22
CLN3-202ENST00000355477 A0A1W2PPR1 153 aa16.41■□□□□ 0.22
CLN3-202ENST00000355477 GJE1A6NN92 205 aa16.41■□□□□ 0.22
CLN3-202ENST00000355477 ADAM11O75078 769 aa16.41■□□□□ 0.22
CLN3-202ENST00000355477 TGDSO95455 350 aa16.41■□□□□ 0.22
CLN3-202ENST00000355477 KRT75O95678 551 aa16.41■□□□□ 0.22
CLN3-202ENST00000355477 HRGP04196 525 aa16.41■□□□□ 0.22
CLN3-202ENST00000355477 PGCP20142 388 aa16.41■□□□□ 0.22
CLN3-202ENST00000355477 KCNJ5P48544 419 aa16.41■□□□□ 0.22
CLN3-202ENST00000355477 KCNJ10P78508 379 aa16.41■□□□□ 0.22
CLN3-202ENST00000355477 SELENBP1Q13228 472 aa16.41■□□□□ 0.22
CLN3-202ENST00000355477 POU4F3Q15319 338 aa16.41■□□□□ 0.22
CLN3-202ENST00000355477 EXOC3L2Q2M3D2 409 aa16.41■□□□□ 0.22
CLN3-202ENST00000355477 GTDC1Q4AE62 458 aa16.41■□□□□ 0.22
CLN3-202ENST00000355477 FBXW10Q5XX13 1052 aa16.41■□□□□ 0.22
CLN3-202ENST00000355477 LRRC74BQ6ZQY2 392 aa16.41■□□□□ 0.22
CLN3-202ENST00000355477 RNF128Q8TEB7 428 aa16.41■□□□□ 0.22
CLN3-202ENST00000355477 ABHD3Q8WU67 409 aa16.41■□□□□ 0.22
CLN3-202ENST00000355477 OIT3Q8WWZ8 545 aa16.41■□□□□ 0.22
CLN3-202ENST00000355477 ST8SIA1Q92185 356 aa16.41■□□□□ 0.22
CLN3-202ENST00000355477 CNOT9Q92600 299 aaKnown RBP16.41■□□□□ 0.22
CLN3-202ENST00000355477 TIGARQ9NQ88 270 aa16.41■□□□□ 0.22
CLN3-202ENST00000355477 GLRX2Q9NS18 164 aa16.41■□□□□ 0.22
CLN3-202ENST00000355477 ST6GALNAC1Q9NSC7 600 aaPredicted RBP16.41■□□□□ 0.22
CLN3-202ENST00000355477 ACER3Q9NUN7 267 aa16.41■□□□□ 0.22
CLN3-202ENST00000355477 ST6GALNAC2Q9UJ37 374 aa16.41■□□□□ 0.22
CLN3-202ENST00000355477 SLC35A3Q9Y2D2 325 aa16.41■□□□□ 0.22
CLN3-202ENST00000355477 VPS13CQ709C8 3753 aa16.41■□□□□ 0.22
CLN3-202ENST00000355477 FAM234BA2RU67 622 aa16.4■□□□□ 0.22
CLN3-202ENST00000355477 AGAP5A6NIR3 686 aa16.4■□□□□ 0.22
CLN3-202ENST00000355477 C16orf97H3BN30 126 aa16.4■□□□□ 0.22
CLN3-202ENST00000355477 NR2F1P10589 423 aa16.4■□□□□ 0.22
CLN3-202ENST00000355477 ETFAP13804 333 aa16.4■□□□□ 0.22
CLN3-202ENST00000355477 ENPP1P22413 925 aa16.4■□□□□ 0.22
CLN3-202ENST00000355477 AGTR1P30556 359 aa16.4■□□□□ 0.22
CLN3-202ENST00000355477 RYKP34925 604 aa16.4■□□□□ 0.22
CLN3-202ENST00000355477 ANXA11P50995 505 aaKnown RBP16.4■□□□□ 0.22
CLN3-202ENST00000355477 TXNL4AP83876 142 aaKnown RBP16.4■□□□□ 0.22
CLN3-202ENST00000355477 HPCAP84074 193 aa16.4■□□□□ 0.22
CLN3-202ENST00000355477 MERTKQ12866 999 aa16.4■□□□□ 0.22
CLN3-202ENST00000355477 MSANTD1Q6ZTZ1 278 aa16.4■□□□□ 0.22
CLN3-202ENST00000355477 PLEKHM3Q6ZWE6 761 aa16.4■□□□□ 0.22
CLN3-202ENST00000355477 ZNF550Q7Z398 422 aa16.4■□□□□ 0.22
CLN3-202ENST00000355477 LSRQ86X29 649 aaPredicted RBP16.4■□□□□ 0.22
CLN3-202ENST00000355477 CPNE4Q96A23 557 aaPredicted RBP16.4■□□□□ 0.22
CLN3-202ENST00000355477 AURKBQ96GD4 344 aaPredicted RBP16.4■□□□□ 0.22
CLN3-202ENST00000355477 ITCHQ96J02 903 aa16.4■□□□□ 0.22
CLN3-202ENST00000355477 PLEKHF2Q9H8W4 249 aa16.4■□□□□ 0.22
CLN3-202ENST00000355477 MTHFD2LQ9H903 347 aaPredicted RBP16.4■□□□□ 0.22
CLN3-202ENST00000355477 VIPAS39Q9H9C1 493 aa16.4■□□□□ 0.22
CLN3-202ENST00000355477 TPT1P8Q9HAU6 139 aa16.4■□□□□ 0.22
CLN3-202ENST00000355477 TCF7L2Q9NQB0 619 aa16.4■□□□□ 0.22
CLN3-202ENST00000355477 CCM2LQ9NUG4 571 aaPredicted RBP16.4■□□□□ 0.22
CLN3-202ENST00000355477 PLEKHA6Q9Y2H5 1048 aa16.4■□□□□ 0.22
CLN3-202ENST00000355477 MTORP42345 2549 aa16.4■□□□□ 0.22
CLN3-202ENST00000355477 IGHV3-15A0A0B4J1V0 119 aa16.39■□□□□ 0.21
CLN3-202ENST00000355477 HMGB1P1B2RPK0 211 aaPredicted RBP16.39■□□□□ 0.21
CLN3-202ENST00000355477 CASKO14936 926 aa16.39■□□□□ 0.21
CLN3-202ENST00000355477 SIAH2O43255 324 aa16.39■□□□□ 0.21
CLN3-202ENST00000355477 ANP32DO95626 131 aa16.39■□□□□ 0.21
CLN3-202ENST00000355477 ZCCHC18P0CG32 403 aa16.39■□□□□ 0.21
CLN3-202ENST00000355477 KLK2P20151 261 aa16.39■□□□□ 0.21
CLN3-202ENST00000355477 SLC7A1P30825 629 aa16.39■□□□□ 0.21
CLN3-202ENST00000355477 ART1P52961 327 aa16.39■□□□□ 0.21
CLN3-202ENST00000355477 AQP5P55064 265 aa16.39■□□□□ 0.21
CLN3-202ENST00000355477 ANKRD34AQ69YU3 496 aa16.39■□□□□ 0.21
CLN3-202ENST00000355477 GTF2IRD2BQ6EKJ0 949 aa16.39■□□□□ 0.21
CLN3-202ENST00000355477 SPNS3Q6ZMD2 512 aa16.39■□□□□ 0.21
CLN3-202ENST00000355477 FCRLAQ7L513 359 aa16.39■□□□□ 0.21
CLN3-202ENST00000355477 GTF2IRD2Q86UP8 949 aa16.39■□□□□ 0.21
CLN3-202ENST00000355477 FUNDC1Q8IVP5 155 aa16.39■□□□□ 0.21
CLN3-202ENST00000355477 DYDC1Q8WWB3 177 aa16.39■□□□□ 0.21
CLN3-202ENST00000355477 TMEM234Q8WY98 164 aa16.39■□□□□ 0.21
CLN3-202ENST00000355477 GTF2H4Q92759 462 aa16.39■□□□□ 0.21
CLN3-202ENST00000355477 REXO5Q96IC2 774 aaKnown RBP16.39■□□□□ 0.21
CLN3-202ENST00000355477 OR5B2Q96R09 309 aa16.39■□□□□ 0.21
CLN3-202ENST00000355477 CCDC106Q9BWC9 280 aa16.39■□□□□ 0.21
CLN3-202ENST00000355477 KLHL4Q9C0H6 718 aa16.39■□□□□ 0.21
CLN3-202ENST00000355477 C12orf49Q9H741 205 aa16.39■□□□□ 0.21
CLN3-202ENST00000355477 RMND5AQ9H871 391 aa16.39■□□□□ 0.21
CLN3-202ENST00000355477 INTS9Q9NV88 658 aaKnown RBP16.39■□□□□ 0.21
CLN3-202ENST00000355477 C6orf203Q9P0P8 240 aaPredicted RBP16.39■□□□□ 0.21
CLN3-202ENST00000355477 ACANP16112 2415 aa16.39■□□□□ 0.21
CLN3-202ENST00000355477 ZNF469Q96JG9 3925 aaPredicted RBP16.39■□□□□ 0.21
CLN3-202ENST00000355477 SETD2Q9BYW2 2564 aaPredicted RBP16.38■□□□□ 0.21
CLN3-202ENST00000355477 AP3D1O14617 1153 aa16.38■□□□□ 0.21
CLN3-202ENST00000355477 POLR3GO15318 223 aaPredicted RBP16.38■□□□□ 0.21
CLN3-202ENST00000355477 TFPTP0C1Z6 253 aa16.38■□□□□ 0.21
CLN3-202ENST00000355477 PABPC4LP0CB38 370 aaKnown RBP16.38■□□□□ 0.21
CLN3-202ENST00000355477 RPS4Y1P22090 263 aaKnown RBP16.38■□□□□ 0.21
CLN3-202ENST00000355477 CRATP43155 626 aa16.38■□□□□ 0.21
CLN3-202ENST00000355477 MRPL19P49406 292 aaKnown RBP16.38■□□□□ 0.21
CLN3-202ENST00000355477 RAC3P60763 192 aa16.38■□□□□ 0.21
CLN3-202ENST00000355477 PPP2R2AP63151 447 aa16.38■□□□□ 0.21
CLN3-202ENST00000355477 RNPS1Q15287 305 aaKnown RBP16.38■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms