RNA–Protein interactions for RNA: ENST00000339950.4

USP1-201, Transcript of ubiquitin specific peptidase 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP1, Length 3,996 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP1-201ENST00000339950 AVL9Q8NBF6 648 aa11.1□□□□□ -0.63
USP1-201ENST00000339950 SMPDL3BQ92485 455 aa11.1□□□□□ -0.63
USP1-201ENST00000339950 AHCYL2Q96HN2 611 aaKnown RBP11.1□□□□□ -0.63
USP1-201ENST00000339950 PDCD10Q9BUL8 212 aa11.1□□□□□ -0.63
USP1-201ENST00000339950 BTBD2Q9BX70 525 aa11.1□□□□□ -0.63
USP1-201ENST00000339950 CDCA4Q9BXL8 241 aa11.1□□□□□ -0.63
USP1-201ENST00000339950 CALML5Q9NZT1 146 aa11.1□□□□□ -0.63
USP1-201ENST00000339950 A0A1B0GTH9 108 aa11.09□□□□□ -0.63
USP1-201ENST00000339950 A0A1B0GW55 424 aa11.09□□□□□ -0.63
USP1-201ENST00000339950 HOXC11O43248 304 aaPredicted RBP11.09□□□□□ -0.63
USP1-201ENST00000339950 FGF17O60258 216 aa11.09□□□□□ -0.63
USP1-201ENST00000339950 CLEC3AO75596 197 aa11.09□□□□□ -0.63
USP1-201ENST00000339950 HIST1H2ABP04908 130 aa11.09□□□□□ -0.63
USP1-201ENST00000339950 DUX4L2P0CJ85 424 aa11.09□□□□□ -0.63
USP1-201ENST00000339950 DUX4L3P0CJ86 424 aa11.09□□□□□ -0.63
USP1-201ENST00000339950 DUX4L4P0CJ87 422 aa11.09□□□□□ -0.63
USP1-201ENST00000339950 DUX4L5P0CJ88 424 aa11.09□□□□□ -0.63
USP1-201ENST00000339950 DUX4L6P0CJ89 424 aa11.09□□□□□ -0.63
USP1-201ENST00000339950 DUX4L7P0CJ90 424 aa11.09□□□□□ -0.63
USP1-201ENST00000339950 LIMS3P0CW19 117 aa11.09□□□□□ -0.63
USP1-201ENST00000339950 LIMS4P0CW20 117 aa11.09□□□□□ -0.63
USP1-201ENST00000339950 SNTA1Q13424 505 aa11.09□□□□□ -0.63
USP1-201ENST00000339950 GPR18Q14330 331 aa11.09□□□□□ -0.63
USP1-201ENST00000339950 ZNF79Q15937 498 aa11.09□□□□□ -0.63
USP1-201ENST00000339950 ITPRIPL2Q3MIP1 535 aa11.09□□□□□ -0.63
USP1-201ENST00000339950 YOD1Q5VVQ6 348 aaPredicted RBP11.09□□□□□ -0.63
USP1-201ENST00000339950 THSD4Q6ZMP0 1018 aa11.09□□□□□ -0.63
USP1-201ENST00000339950 HIST3H2AQ7L7L0 130 aa11.09□□□□□ -0.63
USP1-201ENST00000339950 UBE2Q1Q7Z7E8 422 aa11.09□□□□□ -0.63
USP1-201ENST00000339950 REM2Q8IYK8 340 aaPredicted RBP11.09□□□□□ -0.63
USP1-201ENST00000339950 GALNT11Q8NCW6 608 aa11.09□□□□□ -0.63
USP1-201ENST00000339950 FBLIM1Q8WUP2 373 aa11.09□□□□□ -0.63
USP1-201ENST00000339950 TNFAIP8L1Q8WVP5 186 aa11.09□□□□□ -0.63
USP1-201ENST00000339950 SLC7A6Q92536 515 aa11.09□□□□□ -0.63
USP1-201ENST00000339950 HIST1H2ACQ93077 130 aa11.09□□□□□ -0.63
USP1-201ENST00000339950 SRRQ9GZT4 340 aa11.09□□□□□ -0.63
USP1-201ENST00000339950 DUX4Q9UBX2 424 aa11.09□□□□□ -0.63
USP1-201ENST00000339950 ZNF443Q9Y2A4 671 aaPredicted RBP11.09□□□□□ -0.63
USP1-201ENST00000339950 POLR1DQ9Y2S0 133 aa11.09□□□□□ -0.63
USP1-201ENST00000339950 TEX13CA0A0J9YWL9 993 aa11.09□□□□□ -0.63
USP1-201ENST00000339950 ELOA3DA6NLF2 546 aaPredicted RBP11.09□□□□□ -0.63
USP1-201ENST00000339950 SCO2O43819 266 aa11.09□□□□□ -0.63
USP1-201ENST00000339950 OR3A3P47888 321 aa11.09□□□□□ -0.63
USP1-201ENST00000339950 PCBP3P57721 371 aaKnown RBP11.09□□□□□ -0.63
USP1-201ENST00000339950 FGL2Q14314 439 aa11.09□□□□□ -0.63
USP1-201ENST00000339950 ELOA3BQ3SY89 546 aa11.09□□□□□ -0.63
USP1-201ENST00000339950 PLK5Q496M5 336 aa11.09□□□□□ -0.63
USP1-201ENST00000339950 DCST2Q5T1A1 773 aa11.09□□□□□ -0.63
USP1-201ENST00000339950 XKRXQ6PP77 449 aa11.09□□□□□ -0.63
USP1-201ENST00000339950 ANKRD33Q7Z3H0 272 aa11.09□□□□□ -0.63
USP1-201ENST00000339950 ZAR1Q86SH2 424 aa11.09□□□□□ -0.63
USP1-201ENST00000339950 JAZF1Q86VZ6 243 aa11.09□□□□□ -0.63
USP1-201ENST00000339950 TMPRSS12Q86WS5 348 aa11.09□□□□□ -0.63
USP1-201ENST00000339950 ELOA3Q8NG57 546 aa11.09□□□□□ -0.63
USP1-201ENST00000339950 TTLQ8NG68 377 aa11.09□□□□□ -0.63
USP1-201ENST00000339950 OR2T35Q8NGX2 323 aa11.09□□□□□ -0.63
USP1-201ENST00000339950 RASD2Q96D21 266 aa11.09□□□□□ -0.63
USP1-201ENST00000339950 ASB16Q96NS5 453 aa11.09□□□□□ -0.63
USP1-201ENST00000339950 TGM7Q96PF1 710 aa11.09□□□□□ -0.63
USP1-201ENST00000339950 POLDIP3Q9BY77 421 aaKnown RBP11.09□□□□□ -0.63
USP1-201ENST00000339950 ERVK-19Q9WJR5 959 aa11.09□□□□□ -0.63
USP1-201ENST00000339950 TCRBV21S2A2A0A5A6 115 aa11.09□□□□□ -0.63
USP1-201ENST00000339950 OR8G3PP0DMU2 310 aa11.09□□□□□ -0.63
USP1-201ENST00000339950 TFPIP10646 304 aa11.09□□□□□ -0.63
USP1-201ENST00000339950 PRPH2P23942 346 aa11.09□□□□□ -0.63
USP1-201ENST00000339950 DNASE1P24855 282 aa11.09□□□□□ -0.63
USP1-201ENST00000339950 PPP3R1P63098 170 aa11.09□□□□□ -0.63
USP1-201ENST00000339950 REEP5Q00765 189 aa11.09□□□□□ -0.63
USP1-201ENST00000339950 TSPAN31Q12999 210 aa11.09□□□□□ -0.63
USP1-201ENST00000339950 NDUFA9Q16795 377 aa11.09□□□□□ -0.63
USP1-201ENST00000339950 C9orf50Q5SZB4 431 aa11.09□□□□□ -0.63
USP1-201ENST00000339950 GARNL3Q5VVW2 1013 aa11.09□□□□□ -0.63
USP1-201ENST00000339950 SLC35D2Q76EJ3 337 aa11.09□□□□□ -0.63
USP1-201ENST00000339950 SLC25A46Q96AG3 418 aa11.09□□□□□ -0.63
USP1-201ENST00000339950 HS6ST2Q96MM7 605 aa11.09□□□□□ -0.63
USP1-201ENST00000339950 TAPBPLQ9BX59 468 aa11.09□□□□□ -0.63
USP1-201ENST00000339950 TCF7L1Q9HCS4 588 aa11.09□□□□□ -0.63
USP1-201ENST00000339950 TMEM74BQ9NUR3 256 aa11.09□□□□□ -0.63
USP1-201ENST00000339950 NUP50Q9UKX7 468 aa11.09□□□□□ -0.63
USP1-201ENST00000339950 SCN8AQ9UQD0 1980 aa11.09□□□□□ -0.63
USP1-201ENST00000339950 PRSS38A1L453 326 aa11.09□□□□□ -0.63
USP1-201ENST00000339950 CISD3P0C7P0 127 aa11.09□□□□□ -0.63
USP1-201ENST00000339950 DRD3P35462 400 aa11.09□□□□□ -0.63
USP1-201ENST00000339950 OR1D4P47884 311 aa11.09□□□□□ -0.63
USP1-201ENST00000339950 RFX2P48378 723 aa11.09□□□□□ -0.63
USP1-201ENST00000339950 CDK10Q15131 360 aa11.09□□□□□ -0.63
USP1-201ENST00000339950 CHST4Q8NCG5 386 aa11.09□□□□□ -0.63
USP1-201ENST00000339950 MAP6Q96JE9 813 aa11.09□□□□□ -0.63
USP1-201ENST00000339950 MIXL1Q9H2W2 232 aa11.09□□□□□ -0.63
USP1-201ENST00000339950 A4GALTQ9NPC4 353 aa11.09□□□□□ -0.63
USP1-201ENST00000339950 BABAM2Q9NXR7 383 aa11.09□□□□□ -0.63
USP1-201ENST00000339950 HMX3A6NHT5 357 aa11.08□□□□□ -0.64
USP1-201ENST00000339950 FLRT2O43155 660 aa11.08□□□□□ -0.64
USP1-201ENST00000339950 RCBTB2O95199 551 aa11.08□□□□□ -0.64
USP1-201ENST00000339950 PAPLNO95428 1278 aa11.08□□□□□ -0.64
USP1-201ENST00000339950 SIX6O95475 246 aa11.08□□□□□ -0.64
USP1-201ENST00000339950 GPANK1O95872 356 aa11.08□□□□□ -0.64
USP1-201ENST00000339950 IFNA7P01567 189 aa11.08□□□□□ -0.64
USP1-201ENST00000339950 OMPP47874 163 aa11.08□□□□□ -0.64
USP1-201ENST00000339950 GBX2P52951 348 aaPredicted RBP11.08□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 24 ms