RNA–Protein interactions for RNA: ENST00000297261.6

SHH-201, Transcript of sonic hedgehog, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHH, Length 4,454 nt, Biotype protein coding, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-201ENST00000297261 DCNP07585 359 aaKnown RBP14.36□□□□□ -0.11
SHH-201ENST00000297261 DRD2P14416 443 aa14.36□□□□□ -0.11
SHH-201ENST00000297261 POLR2CP19387 275 aaPredicted RBP14.36□□□□□ -0.11
SHH-201ENST00000297261 CCKBRP32239 447 aa14.36□□□□□ -0.11
SHH-201ENST00000297261 DLSTP36957 453 aa14.36□□□□□ -0.11
SHH-201ENST00000297261 SFXN4Q6P4A7 337 aa14.36□□□□□ -0.11
SHH-201ENST00000297261 ARHGAP11AQ6P4F7 1023 aa14.36□□□□□ -0.11
SHH-201ENST00000297261 C17orf107Q6ZR85 190 aa14.36□□□□□ -0.11
SHH-201ENST00000297261 NANOGP1Q8N7R0 232 aa14.36□□□□□ -0.11
SHH-201ENST00000297261 OR10K1Q8NGX5 313 aa14.36□□□□□ -0.11
SHH-201ENST00000297261 MOAP1Q96BY2 351 aa14.36□□□□□ -0.11
SHH-201ENST00000297261 PFDN5Q99471 154 aa14.36□□□□□ -0.11
SHH-201ENST00000297261 Q9N2J8 555 aa14.36□□□□□ -0.11
SHH-201ENST00000297261 ACER3Q9NUN7 267 aa14.36□□□□□ -0.11
SHH-201ENST00000297261 PIAS3Q9Y6X2 628 aa14.36□□□□□ -0.11
SHH-201ENST00000297261 H3BQ06 376 aaPredicted RBP14.35□□□□□ -0.11
SHH-201ENST00000297261 ELAVL4P26378 380 aaKnown RBP14.35□□□□□ -0.11
SHH-201ENST00000297261 ETV5P41161 510 aa14.35□□□□□ -0.11
SHH-201ENST00000297261 MC3RP41968 323 aa14.35□□□□□ -0.11
SHH-201ENST00000297261 ETV1P50549 477 aa14.35□□□□□ -0.11
SHH-201ENST00000297261 IHHQ14623 411 aa14.35□□□□□ -0.11
SHH-201ENST00000297261 OR4C11Q6IEV9 310 aa14.35□□□□□ -0.11
SHH-201ENST00000297261 LRFN4Q6PJG9 635 aa14.35□□□□□ -0.11
SHH-201ENST00000297261 CCDC190Q86UF4 302 aa14.35□□□□□ -0.11
SHH-201ENST00000297261 NRROSQ86YC3 692 aa14.35□□□□□ -0.11
SHH-201ENST00000297261 KLHDC8AQ8IYD2 350 aa14.35□□□□□ -0.11
SHH-201ENST00000297261 GPR135Q8IZ08 494 aa14.35□□□□□ -0.11
SHH-201ENST00000297261 DUSP19Q8WTR2 217 aa14.35□□□□□ -0.11
SHH-201ENST00000297261 OPALINQ96PE5 141 aa14.35□□□□□ -0.11
SHH-201ENST00000297261 SEC22CQ9BRL7 303 aa14.35□□□□□ -0.11
SHH-201ENST00000297261 SLC6A13Q9NSD5 602 aa14.35□□□□□ -0.11
SHH-201ENST00000297261 KHNYNO15037 678 aaKnown RBP14.35□□□□□ -0.11
SHH-201ENST00000297261 RAF1P04049 648 aa14.35□□□□□ -0.11
SHH-201ENST00000297261 RBMS1P29558 406 aaKnown RBP14.35□□□□□ -0.11
SHH-201ENST00000297261 KIAA1211LQ6NV74 962 aa14.35□□□□□ -0.11
SHH-201ENST00000297261 PRSS45Q7RTY3 260 aa14.35□□□□□ -0.11
SHH-201ENST00000297261 SDR9C7Q8NEX9 313 aa14.35□□□□□ -0.11
SHH-201ENST00000297261 SLC7A13Q8TCU3 470 aa14.35□□□□□ -0.11
SHH-201ENST00000297261 CREB3L4Q8TEY5 395 aa14.35□□□□□ -0.11
SHH-201ENST00000297261 SETD7Q8WTS6 366 aaKnown RBP14.35□□□□□ -0.11
SHH-201ENST00000297261 KATNB1Q9BVA0 655 aa14.35□□□□□ -0.11
SHH-201ENST00000297261 SEC61A2Q9H9S3 476 aa14.35□□□□□ -0.11
SHH-201ENST00000297261 EMC7Q9NPA0 242 aa14.35□□□□□ -0.11
SHH-201ENST00000297261 MYNNQ9NPC7 610 aa14.35□□□□□ -0.11
SHH-201ENST00000297261 RXFP3Q9NSD7 469 aa14.35□□□□□ -0.11
SHH-201ENST00000297261 ZNF226Q9NYT6 803 aa14.35□□□□□ -0.11
SHH-201ENST00000297261 GPN3Q9UHW5 284 aaPredicted RBP14.35□□□□□ -0.11
SHH-201ENST00000297261 RALGAPA2Q2PPJ7 1873 aa14.35□□□□□ -0.11
SHH-201ENST00000297261 SSX5O60225 188 aa14.35□□□□□ -0.11
SHH-201ENST00000297261 LILRB3O75022 631 aa14.35□□□□□ -0.11
SHH-201ENST00000297261 SDC3O75056 442 aa14.35□□□□□ -0.11
SHH-201ENST00000297261 RBMXL2O75526 392 aaKnown RBP14.35□□□□□ -0.11
SHH-201ENST00000297261 KCNJ10P78508 379 aa14.35□□□□□ -0.11
SHH-201ENST00000297261 POU4F2Q12837 409 aa14.35□□□□□ -0.11
SHH-201ENST00000297261 EOGTQ5NDL2 527 aa14.35□□□□□ -0.11
SHH-201ENST00000297261 NUP54Q7Z3B4 507 aa14.35□□□□□ -0.11
SHH-201ENST00000297261 OR5AR1Q8NGP9 310 aa14.35□□□□□ -0.11
SHH-201ENST00000297261 HCAR2Q8TDS4 363 aa14.35□□□□□ -0.11
SHH-201ENST00000297261 PAQR8Q8TEZ7 354 aa14.35□□□□□ -0.11
SHH-201ENST00000297261 TANKQ92844 425 aa14.35□□□□□ -0.11
SHH-201ENST00000297261 DCLRE1CQ96SD1 692 aaKnown RBP14.35□□□□□ -0.11
SHH-201ENST00000297261 PBX4Q9BYU1 374 aa14.35□□□□□ -0.11
SHH-201ENST00000297261 PRMT8Q9NR22 394 aaPredicted RBP14.35□□□□□ -0.11
SHH-201ENST00000297261 PRRT4C9JH25 899 aa14.35□□□□□ -0.11
SHH-201ENST00000297261 LALBAP00709 142 aa14.35□□□□□ -0.11
SHH-201ENST00000297261 ALG10BQ5I7T1 473 aa14.35□□□□□ -0.11
SHH-201ENST00000297261 VRK3Q8IV63 474 aa14.35□□□□□ -0.11
SHH-201ENST00000297261 LRRC56Q8IYG6 542 aaPredicted RBP14.35□□□□□ -0.11
SHH-201ENST00000297261 ALG14Q96F25 216 aa14.35□□□□□ -0.11
SHH-201ENST00000297261 CNTNAP3BQ96NU0 1288 aa14.35□□□□□ -0.11
SHH-201ENST00000297261 SDHAF2Q9NX18 166 aa14.35□□□□□ -0.11
SHH-201ENST00000297261 SIRT5Q9NXA8 310 aa14.35□□□□□ -0.11
SHH-201ENST00000297261 CD160O95971 181 aa14.34□□□□□ -0.11
SHH-201ENST00000297261 P2RY14Q15391 338 aa14.34□□□□□ -0.11
SHH-201ENST00000297261 VRK2Q86Y07 508 aa14.34□□□□□ -0.11
SHH-201ENST00000297261 NLGN4YQ8NFZ3 816 aaPredicted RBP14.34□□□□□ -0.11
SHH-201ENST00000297261 SCGB3A2Q96PL1 93 aa14.34□□□□□ -0.11
SHH-201ENST00000297261 KLHL42Q9P2K6 505 aa14.34□□□□□ -0.11
SHH-201ENST00000297261 RNF13O43567 381 aa14.34□□□□□ -0.11
SHH-201ENST00000297261 ELK1P19419 428 aa14.34□□□□□ -0.11
SHH-201ENST00000297261 ACTBP60709 375 aa14.34□□□□□ -0.11
SHH-201ENST00000297261 ACTG1P63261 375 aa14.34□□□□□ -0.11
SHH-201ENST00000297261 SYT14P1Q58G82 188 aa14.34□□□□□ -0.11
SHH-201ENST00000297261 L3MBTL4Q8NA19 623 aa14.34□□□□□ -0.11
SHH-201ENST00000297261 OR2L8Q8NGY9 312 aa14.34□□□□□ -0.11
SHH-201ENST00000297261 GHSRQ92847 366 aa14.34□□□□□ -0.11
SHH-201ENST00000297261 ZNF225Q9UK10 706 aa14.34□□□□□ -0.11
SHH-201ENST00000297261 HEBP2Q9Y5Z4 205 aa14.34□□□□□ -0.11
SHH-201ENST00000297261 NPIPA5A0A0B4J1W7 369 aa14.34□□□□□ -0.11
SHH-201ENST00000297261 TRDV1A0A1B0GX56 115 aa14.34□□□□□ -0.11
SHH-201ENST00000297261 TRABD2BA6NFA1 517 aa14.34□□□□□ -0.11
SHH-201ENST00000297261 ACOD1A6NK06 481 aa14.34□□□□□ -0.11
SHH-201ENST00000297261 NPIPA7E9PJI5 369 aa14.34□□□□□ -0.11
SHH-201ENST00000297261 SOCS6O14544 535 aa14.34□□□□□ -0.11
SHH-201ENST00000297261 CSTAP01040 98 aa14.34□□□□□ -0.11
SHH-201ENST00000297261 NPIPA8P0DM63 369 aa14.34□□□□□ -0.11
SHH-201ENST00000297261 S1PR1P21453 382 aa14.34□□□□□ -0.11
SHH-201ENST00000297261 RBMXP38159 391 aaKnown RBP14.34□□□□□ -0.11
SHH-201ENST00000297261 SMUG1Q53HV7 270 aa14.34□□□□□ -0.11
SHH-201ENST00000297261 CAMKVQ8NCB2 501 aa14.34□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms