RNA–Protein interactions for RNA: ENST00000291074.9

VPS53-201, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 2,656 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-201ENST00000291074 FHL1Q13642 323 aa18.49■□□□□ 0.55
VPS53-201ENST00000291074 XKRXQ6PP77 449 aa18.49■□□□□ 0.55
VPS53-201ENST00000291074 KIRREL2Q6UWL6 708 aa18.49■□□□□ 0.55
VPS53-201ENST00000291074 ARL14Q8N4G2 192 aa18.49■□□□□ 0.55
VPS53-201ENST00000291074 ATF6BQ99941 703 aa18.49■□□□□ 0.55
VPS53-201ENST00000291074 PRTFDC1Q9NRG1 225 aa18.49■□□□□ 0.55
VPS53-201ENST00000291074 ERVK-19Q9WJR5 959 aa18.49■□□□□ 0.55
VPS53-201ENST00000291074 PCDHGB2Q9Y5G2 931 aa18.49■□□□□ 0.55
VPS53-201ENST00000291074 MPDZO75970 2070 aa18.49■□□□□ 0.55
VPS53-201ENST00000291074 LRRN3E7EW58 273 aa18.49■□□□□ 0.55
VPS53-201ENST00000291074 HCN1O60741 890 aa18.49■□□□□ 0.55
VPS53-201ENST00000291074 IFI6P09912 130 aa18.49■□□□□ 0.55
VPS53-201ENST00000291074 APEX1P27695 318 aaKnown RBP18.49■□□□□ 0.55
VPS53-201ENST00000291074 BLKP51451 505 aa18.49■□□□□ 0.55
VPS53-201ENST00000291074 RPL13AP3Q6NVV1 102 aa18.49■□□□□ 0.55
VPS53-201ENST00000291074 TMEM53Q6P2H8 277 aa18.49■□□□□ 0.55
VPS53-201ENST00000291074 UBE2J2Q8N2K1 259 aa18.49■□□□□ 0.55
VPS53-201ENST00000291074 ZNF426Q9BUY5 554 aa18.49■□□□□ 0.55
VPS53-201ENST00000291074 TTTY10Q9BZA0 68 aa18.49■□□□□ 0.55
VPS53-201ENST00000291074 LRRN3Q9H3W5 708 aa18.49■□□□□ 0.55
VPS53-201ENST00000291074 MCCC2Q9HCC0 563 aa18.49■□□□□ 0.55
VPS53-201ENST00000291074 BABAM2Q9NXR7 383 aa18.49■□□□□ 0.55
VPS53-201ENST00000291074 LRIT1Q9P2V4 623 aa18.49■□□□□ 0.55
VPS53-201ENST00000291074 TMEM184BQ9Y519 407 aaPredicted RBP18.49■□□□□ 0.55
VPS53-201ENST00000291074 RIIAD1A6NNX1 92 aa18.48■□□□□ 0.55
VPS53-201ENST00000291074 GTPBP1O00178 669 aaKnown RBP18.48■□□□□ 0.55
VPS53-201ENST00000291074 MAOBP27338 520 aa18.48■□□□□ 0.55
VPS53-201ENST00000291074 KCNJ8Q15842 424 aa18.48■□□□□ 0.55
VPS53-201ENST00000291074 AGAP6Q5VW22 663 aa18.48■□□□□ 0.55
VPS53-201ENST00000291074 CNIH2Q6PI25 160 aa18.48■□□□□ 0.55
VPS53-201ENST00000291074 UTS2BQ765I0 119 aa18.48■□□□□ 0.55
VPS53-201ENST00000291074 GALNT6Q8NCL4 622 aa18.48■□□□□ 0.55
VPS53-201ENST00000291074 OR4C6Q8NH72 309 aa18.48■□□□□ 0.55
VPS53-201ENST00000291074 PMM1Q92871 262 aa18.48■□□□□ 0.55
VPS53-201ENST00000291074 SENP5Q96HI0 755 aaPredicted RBP18.48■□□□□ 0.55
VPS53-201ENST00000291074 AGAP4Q96P64 663 aa18.48■□□□□ 0.55
VPS53-201ENST00000291074 MMP28Q9H239 520 aa18.48■□□□□ 0.55
VPS53-201ENST00000291074 ASB6Q9NWX5 421 aa18.48■□□□□ 0.55
VPS53-201ENST00000291074 FBXL21Q9UKT6 434 aa18.48■□□□□ 0.55
VPS53-201ENST00000291074 SLC35A3Q9Y2D2 325 aa18.48■□□□□ 0.55
VPS53-201ENST00000291074 MTCH2Q9Y6C9 303 aa18.48■□□□□ 0.55
VPS53-201ENST00000291074 TFECO14948 347 aaPredicted RBP18.48■□□□□ 0.55
VPS53-201ENST00000291074 CTNSO60931 367 aa18.48■□□□□ 0.55
VPS53-201ENST00000291074 GFERP55789 205 aa18.48■□□□□ 0.55
VPS53-201ENST00000291074 SCN1BQ07699 218 aa18.48■□□□□ 0.55
VPS53-201ENST00000291074 GPR50Q13585 617 aa18.48■□□□□ 0.55
VPS53-201ENST00000291074 NR2C2APQ86WQ0 139 aa18.48■□□□□ 0.55
VPS53-201ENST00000291074 DGAT2Q96PD7 388 aa18.48■□□□□ 0.55
VPS53-201ENST00000291074 PPIL3Q9H2H8 161 aaKnown RBP18.48■□□□□ 0.55
VPS53-201ENST00000291074 DYRK3O43781 588 aa18.47■□□□□ 0.55
VPS53-201ENST00000291074 CT45A8P0DMV1 189 aa18.47■□□□□ 0.55
VPS53-201ENST00000291074 CT45A9P0DMV2 189 aa18.47■□□□□ 0.55
VPS53-201ENST00000291074 P2RY14Q15391 338 aa18.47■□□□□ 0.55
VPS53-201ENST00000291074 CT45A2Q5DJT8 189 aa18.47■□□□□ 0.55
VPS53-201ENST00000291074 CHCHD2P9Q5T1J5 151 aaPredicted RBP18.47■□□□□ 0.55
VPS53-201ENST00000291074 FAM27D1Q5T7N8 215 aa18.47■□□□□ 0.55
VPS53-201ENST00000291074 ARL9Q6T311 187 aa18.47■□□□□ 0.55
VPS53-201ENST00000291074 GRAMD2AQ8IUY3 354 aa18.47■□□□□ 0.55
VPS53-201ENST00000291074 C16orf52Q8NHV5 167 aa18.47■□□□□ 0.55
VPS53-201ENST00000291074 MMABQ96EY8 250 aaPredicted RBP18.47■□□□□ 0.55
VPS53-201ENST00000291074 LMF1Q96S06 567 aa18.47■□□□□ 0.55
VPS53-201ENST00000291074 ADGRL4Q9HBW9 690 aa18.47■□□□□ 0.55
VPS53-201ENST00000291074 CACNA1IQ9P0X4 2223 aa18.47■□□□□ 0.55
VPS53-201ENST00000291074 ZMIZ1Q9ULJ6 1067 aa18.47■□□□□ 0.55
VPS53-201ENST00000291074 SDK1Q7Z5N4 2213 aa18.47■□□□□ 0.55
VPS53-201ENST00000291074 HTR3EA5X5Y0 456 aa18.47■□□□□ 0.55
VPS53-201ENST00000291074 SLC22A31A6NKX4 558 aa18.47■□□□□ 0.55
VPS53-201ENST00000291074 PROS1P07225 676 aa18.47■□□□□ 0.55
VPS53-201ENST00000291074 SLC2A5P22732 501 aa18.47■□□□□ 0.55
VPS53-201ENST00000291074 CAPZBP47756 277 aa18.47■□□□□ 0.55
VPS53-201ENST00000291074 E2F1Q01094 437 aa18.47■□□□□ 0.55
VPS53-201ENST00000291074 GALEQ14376 348 aa18.47■□□□□ 0.55
VPS53-201ENST00000291074 FGFBP1Q14512 234 aa18.47■□□□□ 0.55
VPS53-201ENST00000291074 GXYLT1Q4G148 440 aa18.47■□□□□ 0.55
VPS53-201ENST00000291074 RPTNQ6XPR3 784 aa18.47■□□□□ 0.55
VPS53-201ENST00000291074 ZNF517Q6ZMY9 492 aaPredicted RBP18.47■□□□□ 0.55
VPS53-201ENST00000291074 RFLNBQ8N5W9 214 aa18.47■□□□□ 0.55
VPS53-201ENST00000291074 LRRC17Q8N6Y2 441 aa18.47■□□□□ 0.55
VPS53-201ENST00000291074 OR4C3Q8NH37 302 aa18.47■□□□□ 0.55
VPS53-201ENST00000291074 LMX1AQ8TE12 382 aa18.47■□□□□ 0.55
VPS53-201ENST00000291074 TRIM2Q9C040 744 aa18.47■□□□□ 0.55
VPS53-201ENST00000291074 C11orf54Q9H0W9 315 aaPredicted RBP18.47■□□□□ 0.55
VPS53-201ENST00000291074 SBK2P0C263 348 aa18.46■□□□□ 0.55
VPS53-201ENST00000291074 GPR3P46089 330 aa18.46■□□□□ 0.55
VPS53-201ENST00000291074 PPP3R1P63098 170 aa18.46■□□□□ 0.55
VPS53-201ENST00000291074 GAS6Q14393 721 aa18.46■□□□□ 0.55
VPS53-201ENST00000291074 SDR9C7Q8NEX9 313 aa18.46■□□□□ 0.55
VPS53-201ENST00000291074 COQ7Q99807 217 aa18.46■□□□□ 0.55
VPS53-201ENST00000291074 POLHQ9Y253 713 aa18.46■□□□□ 0.55
VPS53-201ENST00000291074 MRPS33Q9Y291 106 aaKnown RBP18.46■□□□□ 0.55
VPS53-201ENST00000291074 CLCA3PQ9Y6N3 262 aa18.46■□□□□ 0.55
VPS53-201ENST00000291074 IGHV1OR15-9A0A0B4J2B8 117 aa18.46■□□□□ 0.55
VPS53-201ENST00000291074 NPIPB9F8W1W9 429 aa18.46■□□□□ 0.55
VPS53-201ENST00000291074 RGS9O75916 674 aaPredicted RBP18.46■□□□□ 0.55
VPS53-201ENST00000291074 CHRNB1P11230 501 aa18.46■□□□□ 0.55
VPS53-201ENST00000291074 ZNF3P17036 446 aa18.46■□□□□ 0.55
VPS53-201ENST00000291074 HCCSP53701 268 aa18.46■□□□□ 0.55
VPS53-201ENST00000291074 SSX6Q7RTT6 188 aa18.46■□□□□ 0.55
VPS53-201ENST00000291074 UBQLNLQ8IYU4 475 aa18.46■□□□□ 0.55
VPS53-201ENST00000291074 GHDCQ8N2G8 530 aa18.46■□□□□ 0.55
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms