RNA–Protein interactions for RNA: ENST00000274071.6

PDGFC-201, Transcript of platelet derived growth factor C, humanhuman

TSL 1 (best)

Gene PDGFC, Length 2,987 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDGFC-201ENST00000274071 GPR3P46089 330 aa8.58□□□□□ -1.04
PDGFC-201ENST00000274071 CCR8P51685 355 aa8.58□□□□□ -1.04
PDGFC-201ENST00000274071 EPHB3P54753 998 aa8.58□□□□□ -1.04
PDGFC-201ENST00000274071 WNT3AP56704 352 aa8.58□□□□□ -1.04
PDGFC-201ENST00000274071 TDGQ13569 410 aa8.58□□□□□ -1.04
PDGFC-201ENST00000274071 GRB14Q14449 540 aa8.58□□□□□ -1.04
PDGFC-201ENST00000274071 SLBPQ14493 270 aaKnown RBP eCLIP8.58□□□□□ -1.04
PDGFC-201ENST00000274071 CSRP2Q16527 193 aa8.58□□□□□ -1.04
PDGFC-201ENST00000274071 NSUN5P2Q63ZY6 315 aa8.58□□□□□ -1.04
PDGFC-201ENST00000274071 FIGNL1Q6PIW4 674 aa8.58□□□□□ -1.04
PDGFC-201ENST00000274071 CTU1Q7Z7A3 348 aaKnown RBP8.58□□□□□ -1.04
PDGFC-201ENST00000274071 GPSM1Q86YR5 675 aa8.58□□□□□ -1.04
PDGFC-201ENST00000274071 OR4F15Q8NGB8 312 aa8.58□□□□□ -1.04
PDGFC-201ENST00000274071 PAQR8Q8TEZ7 354 aa8.58□□□□□ -1.04
PDGFC-201ENST00000274071 ARL11Q969Q4 196 aa8.58□□□□□ -1.04
PDGFC-201ENST00000274071 MS4A4AQ96JQ5 239 aa8.58□□□□□ -1.04
PDGFC-201ENST00000274071 ZNF558Q96NG5 402 aa8.58□□□□□ -1.04
PDGFC-201ENST00000274071 ZNF385AQ96PM9 386 aaKnown RBP8.58□□□□□ -1.04
PDGFC-201ENST00000274071 MTERF1Q99551 399 aaKnown RBP8.58□□□□□ -1.04
PDGFC-201ENST00000274071 WDCPQ9H6R7 721 aa8.58□□□□□ -1.04
PDGFC-201ENST00000274071 IPPKQ9H8X2 491 aa8.58□□□□□ -1.04
PDGFC-201ENST00000274071 SEC61A2Q9H9S3 476 aa8.58□□□□□ -1.04
PDGFC-201ENST00000274071 RPS10P5Q9NQ39 176 aa8.58□□□□□ -1.04
PDGFC-201ENST00000274071 NME7Q9Y5B8 376 aa8.58□□□□□ -1.04
PDGFC-201ENST00000274071 TRAV14DV4A0A0A6YYC5 116 aa8.57□□□□□ -1.04
PDGFC-201ENST00000274071 CCL15-CCL14A0A0B4J2E2 113 aa8.57□□□□□ -1.04
PDGFC-201ENST00000274071 A0A1W2PPH5 198 aa8.57□□□□□ -1.04
PDGFC-201ENST00000274071 MAGEB17A8MXT2 336 aa8.57□□□□□ -1.04
PDGFC-201ENST00000274071 TLR5O60602 858 aa8.57□□□□□ -1.04
PDGFC-201ENST00000274071 CKBP12277 381 aa8.57□□□□□ -1.04
PDGFC-201ENST00000274071 SCNN1AP37088 669 aa8.57□□□□□ -1.04
PDGFC-201ENST00000274071 SLC7A9P82251 487 aa8.57□□□□□ -1.04
PDGFC-201ENST00000274071 ARHGAP1Q07960 439 aa8.57□□□□□ -1.04
PDGFC-201ENST00000274071 DOC2AQ14183 400 aa8.57□□□□□ -1.04
PDGFC-201ENST00000274071 CCL15Q16663 113 aa8.57□□□□□ -1.04
PDGFC-201ENST00000274071 LINC00303Q3SY05 128 aa8.57□□□□□ -1.04
PDGFC-201ENST00000274071 SCGB2B2Q4G0G5 96 aa8.57□□□□□ -1.04
PDGFC-201ENST00000274071 IFI44LQ53G44 452 aa8.57□□□□□ -1.04
PDGFC-201ENST00000274071 BEX5Q5H9J7 111 aa8.57□□□□□ -1.04
PDGFC-201ENST00000274071 ELFN2Q5R3F8 820 aa8.57□□□□□ -1.04
PDGFC-201ENST00000274071 DNLZQ5SXM8 178 aa8.57□□□□□ -1.04
PDGFC-201ENST00000274071 ZNF385CQ66K41 422 aaPredicted RBP8.57□□□□□ -1.04
PDGFC-201ENST00000274071 TAPT1Q6NXT6 567 aa8.57□□□□□ -1.04
PDGFC-201ENST00000274071 C5orf24Q7Z6I8 188 aa8.57□□□□□ -1.04
PDGFC-201ENST00000274071 IQCF1Q8N6M8 205 aa8.57□□□□□ -1.04
PDGFC-201ENST00000274071 OR6J1Q8NGC5 347 aa8.57□□□□□ -1.04
PDGFC-201ENST00000274071 OR1J4Q8NGS1 313 aa8.57□□□□□ -1.04
PDGFC-201ENST00000274071 NUBPLQ8TB37 319 aa8.57□□□□□ -1.04
PDGFC-201ENST00000274071 ZNF582Q96NG8 517 aaPredicted RBP8.57□□□□□ -1.04
PDGFC-201ENST00000274071 CCNL2Q96S94 520 aaPredicted RBP8.57□□□□□ -1.04
PDGFC-201ENST00000274071 NPY6RQ99463 290 aa8.57□□□□□ -1.04
PDGFC-201ENST00000274071 FDXACB1Q9BRP7 624 aaPredicted RBP8.57□□□□□ -1.04
PDGFC-201ENST00000274071 NDUFAF3Q9BU61 184 aa8.57□□□□□ -1.04
PDGFC-201ENST00000274071 NRSN2Q9GZP1 204 aa8.57□□□□□ -1.04
PDGFC-201ENST00000274071 THSD1Q9NS62 852 aa8.57□□□□□ -1.04
PDGFC-201ENST00000274071 CHTOPQ9Y3Y2 248 aaKnown RBP8.57□□□□□ -1.04
PDGFC-201ENST00000274071 PCDHB1Q9Y5F3 818 aa8.57□□□□□ -1.04
PDGFC-201ENST00000274071 GBF1Q92538 1859 aa8.57□□□□□ -1.04
PDGFC-201ENST00000274071 GABRDO14764 452 aa8.57□□□□□ -1.04
PDGFC-201ENST00000274071 B4GALT5O43286 388 aa8.57□□□□□ -1.04
PDGFC-201ENST00000274071 GSTZ1O43708 216 aaPredicted RBP8.57□□□□□ -1.04
PDGFC-201ENST00000274071 CYTIPO60759 359 aa8.57□□□□□ -1.04
PDGFC-201ENST00000274071 HLA-DQB2P05538 268 aa8.57□□□□□ -1.04
PDGFC-201ENST00000274071 LINC00614P0C842 121 aa8.57□□□□□ -1.04
PDGFC-201ENST00000274071 CD79AP11912 226 aa8.57□□□□□ -1.04
PDGFC-201ENST00000274071 MYOGP15173 224 aa8.57□□□□□ -1.04
PDGFC-201ENST00000274071 PRKXP51817 358 aa8.57□□□□□ -1.04
PDGFC-201ENST00000274071 CARD18P57730 90 aa8.57□□□□□ -1.04
PDGFC-201ENST00000274071 STXBP1P61764 594 aaKnown RBP8.57□□□□□ -1.04
PDGFC-201ENST00000274071 HSD11B2P80365 405 aa8.57□□□□□ -1.04
PDGFC-201ENST00000274071 SHC2P98077 582 aa8.57□□□□□ -1.04
PDGFC-201ENST00000274071 GTF2H2Q13888 395 aa8.57□□□□□ -1.04
PDGFC-201ENST00000274071 ZNHIT3Q15649 155 aaPredicted RBP8.57□□□□□ -1.04
PDGFC-201ENST00000274071 CXorf57Q6NSI4 855 aaKnown RBP8.57□□□□□ -1.04
PDGFC-201ENST00000274071 FAAP20Q6NZ36 180 aa8.57□□□□□ -1.04
PDGFC-201ENST00000274071 GTF2H2CQ6P1K8 395 aa8.57□□□□□ -1.04
PDGFC-201ENST00000274071 FBXO46Q6PJ61 603 aaPredicted RBP8.57□□□□□ -1.04
PDGFC-201ENST00000274071 MSANTD1Q6ZTZ1 278 aa8.57□□□□□ -1.04
PDGFC-201ENST00000274071 KCNRGQ8N5I3 272 aa8.57□□□□□ -1.04
PDGFC-201ENST00000274071 FBXO15Q8NCQ5 510 aaPredicted RBP8.57□□□□□ -1.04
PDGFC-201ENST00000274071 ST7LQ8TDW4 575 aa8.57□□□□□ -1.04
PDGFC-201ENST00000274071 SMIM4Q8WVI0 70 aa8.57□□□□□ -1.04
PDGFC-201ENST00000274071 CAMK1GQ96NX5 476 aa8.57□□□□□ -1.04
PDGFC-201ENST00000274071 ELF4Q99607 663 aaPredicted RBP8.57□□□□□ -1.04
PDGFC-201ENST00000274071 EGFL8Q99944 293 aa8.57□□□□□ -1.04
PDGFC-201ENST00000274071 FGF20Q9NP95 211 aaPredicted RBP8.57□□□□□ -1.04
PDGFC-201ENST00000274071 FAM86C1Q9NVL1 165 aa8.57□□□□□ -1.04
PDGFC-201ENST00000274071 ASIC5Q9NY37 505 aa8.57□□□□□ -1.04
PDGFC-201ENST00000274071 TAS2R13Q9NYV9 303 aa8.57□□□□□ -1.04
PDGFC-201ENST00000274071 MOKQ9UQ07 419 aa8.57□□□□□ -1.04
PDGFC-201ENST00000274071 TNFSF13BQ9Y275 285 aa8.57□□□□□ -1.04
PDGFC-201ENST00000274071 CARNS1A5YM72 827 aa8.56□□□□□ -1.04
PDGFC-201ENST00000274071 SMAD6O43541 496 aaKnown RBP8.56□□□□□ -1.04
PDGFC-201ENST00000274071 PRSS56P0CW18 603 aa8.56□□□□□ -1.04
PDGFC-201ENST00000274071 VSIG10L2P0DP72 767 aa8.56□□□□□ -1.04
PDGFC-201ENST00000274071 XCR1P46094 333 aa8.56□□□□□ -1.04
PDGFC-201ENST00000274071 OMPP47874 163 aa8.56□□□□□ -1.04
PDGFC-201ENST00000274071 ZXDBP98169 803 aa8.56□□□□□ -1.04
PDGFC-201ENST00000274071 TRA2AQ13595 282 aaKnown RBP eCLIP8.56□□□□□ -1.04
PDGFC-201ENST00000274071 SLC25A35Q3KQZ1 300 aa8.56□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 58.6 ms