RNA–Protein interactions for RNA: ENST00000635861.1

CLN3-241, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,404 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-241ENST00000635861 SPDYE7PQ495Y7 208 aa16.41■□□□□ 0.22
CLN3-241ENST00000635861 CBLN3Q6UW01 205 aa16.41■□□□□ 0.22
CLN3-241ENST00000635861 TFAP2EQ6VUC0 442 aa16.41■□□□□ 0.22
CLN3-241ENST00000635861 Q71RC1 249 aaPredicted RBP16.41■□□□□ 0.22
CLN3-241ENST00000635861 FCRLAQ7L513 359 aa16.41■□□□□ 0.22
CLN3-241ENST00000635861 SSX8Q7RTT4 187 aa16.41■□□□□ 0.22
CLN3-241ENST00000635861 WFDC8Q8IUA0 241 aa16.41■□□□□ 0.22
CLN3-241ENST00000635861 RIMKLAQ8IXN7 391 aa16.41■□□□□ 0.22
CLN3-241ENST00000635861 FNDC5Q8NAU1 212 aa16.41■□□□□ 0.22
CLN3-241ENST00000635861 GPR119Q8TDV5 335 aa16.41■□□□□ 0.22
CLN3-241ENST00000635861 NUDT8Q8WV74 236 aa16.41■□□□□ 0.22
CLN3-241ENST00000635861 OIT3Q8WWZ8 545 aa16.41■□□□□ 0.22
CLN3-241ENST00000635861 CARD8Q9Y2G2 431 aa16.41■□□□□ 0.22
CLN3-241ENST00000635861 ZNF264O43296 627 aa16.4■□□□□ 0.22
CLN3-241ENST00000635861 CNOT4O95628 575 aaKnown RBP16.4■□□□□ 0.22
CLN3-241ENST00000635861 NTN1O95631 604 aa16.4■□□□□ 0.22
CLN3-241ENST00000635861 C6orf47O95873 294 aa16.4■□□□□ 0.22
CLN3-241ENST00000635861 YES1P07947 543 aa16.4■□□□□ 0.22
CLN3-241ENST00000635861 RAC3P60763 192 aa16.4■□□□□ 0.22
CLN3-241ENST00000635861 CBFBQ13951 182 aa16.4■□□□□ 0.22
CLN3-241ENST00000635861 SFRP5Q5T4F7 317 aa16.4■□□□□ 0.22
CLN3-241ENST00000635861 IL23RQ5VWK5 629 aa16.4■□□□□ 0.22
CLN3-241ENST00000635861 CIARTQ8N365 385 aaPredicted RBP16.4■□□□□ 0.22
CLN3-241ENST00000635861 OR5W2Q8NH69 310 aa16.4■□□□□ 0.22
CLN3-241ENST00000635861 TCP10LQ8TDR4 215 aa16.4■□□□□ 0.22
CLN3-241ENST00000635861 ABHD3Q8WU67 409 aa16.4■□□□□ 0.22
CLN3-241ENST00000635861 ROBO4Q8WZ75 1007 aa16.4■□□□□ 0.22
CLN3-241ENST00000635861 HSD17B8Q92506 261 aa16.4■□□□□ 0.22
CLN3-241ENST00000635861 OR7D2Q96RA2 312 aa16.4■□□□□ 0.22
CLN3-241ENST00000635861 KLHDC3Q9BQ90 382 aa16.4■□□□□ 0.22
CLN3-241ENST00000635861 DUSP26Q9BV47 211 aa16.4■□□□□ 0.22
CLN3-241ENST00000635861 MECRQ9BV79 373 aa16.4■□□□□ 0.22
CLN3-241ENST00000635861 SRXN1Q9BYN0 137 aa16.4■□□□□ 0.22
CLN3-241ENST00000635861 NMUR2Q9GZQ4 415 aa16.4■□□□□ 0.22
CLN3-241ENST00000635861 COQ10BQ9H8M1 238 aa16.4■□□□□ 0.22
CLN3-241ENST00000635861 ASIC5Q9NY37 505 aa16.4■□□□□ 0.22
CLN3-241ENST00000635861 KLHL9Q9P2J3 617 aa16.4■□□□□ 0.22
CLN3-241ENST00000635861 SLC17A7Q9P2U7 560 aa16.4■□□□□ 0.22
CLN3-241ENST00000635861 EFNA2O43921 213 aa16.39■□□□□ 0.21
CLN3-241ENST00000635861 UBL4AP11441 157 aa16.39■□□□□ 0.21
CLN3-241ENST00000635861 SHC1P29353 583 aa16.39■□□□□ 0.21
CLN3-241ENST00000635861 SLC7A1P30825 629 aa16.39■□□□□ 0.21
CLN3-241ENST00000635861 ETFDHQ16134 617 aa16.39■□□□□ 0.21
CLN3-241ENST00000635861 TMEM176BQ3YBM2 270 aaPredicted RBP16.39■□□□□ 0.21
CLN3-241ENST00000635861 DDX59Q5T1V6 619 aaKnown RBP eCLIP16.39■□□□□ 0.21
CLN3-241ENST00000635861 TUSC5Q8IXB3 177 aa16.39■□□□□ 0.21
CLN3-241ENST00000635861 AGR3Q8TD06 166 aa16.39■□□□□ 0.21
CLN3-241ENST00000635861 S100PBPQ96BU1 408 aa16.39■□□□□ 0.21
CLN3-241ENST00000635861 C3orf30Q96M34 536 aa16.39■□□□□ 0.21
CLN3-241ENST00000635861 C1orf50Q9BV19 199 aa16.39■□□□□ 0.21
CLN3-241ENST00000635861 ESRP2Q9H6T0 727 aaKnown RBP16.39■□□□□ 0.21
CLN3-241ENST00000635861 BCO1Q9HAY6 547 aa16.39■□□□□ 0.21
CLN3-241ENST00000635861 GIMAP2Q9UG22 337 aa16.39■□□□□ 0.21
CLN3-241ENST00000635861 CFLARO15519 480 aa16.38■□□□□ 0.21
CLN3-241ENST00000635861 IL32P24001 234 aa16.38■□□□□ 0.21
CLN3-241ENST00000635861 CLDN8P56748 225 aa16.38■□□□□ 0.21
CLN3-241ENST00000635861 CEP85LQ5SZL2 805 aa16.38■□□□□ 0.21
CLN3-241ENST00000635861 C3orf33Q6P1S2 294 aa16.38■□□□□ 0.21
CLN3-241ENST00000635861 ZCCHC23Q6ZST2 131 aa16.38■□□□□ 0.21
CLN3-241ENST00000635861 CROCCP2Q86T23 111 aa16.38■□□□□ 0.21
CLN3-241ENST00000635861 ST8SIA1Q92185 356 aa16.38■□□□□ 0.21
CLN3-241ENST00000635861 TUBGCP3Q96CW5 907 aa16.38■□□□□ 0.21
CLN3-241ENST00000635861 SDF2Q99470 211 aa16.38■□□□□ 0.21
CLN3-241ENST00000635861 POTEKPQ9BYX7 375 aa16.38■□□□□ 0.21
CLN3-241ENST00000635861 NOP53Q9NZM5 478 aaKnown RBP16.38■□□□□ 0.21
CLN3-241ENST00000635861 ZDHHC2Q9UIJ5 367 aa16.38■□□□□ 0.21
CLN3-241ENST00000635861 RNF115Q9Y4L5 304 aa16.38■□□□□ 0.21
CLN3-241ENST00000635861 PLCE1Q9P212 2302 aa16.38■□□□□ 0.21
CLN3-241ENST00000635861 CHD3Q12873 2000 aaKnown RBP16.38■□□□□ 0.21
CLN3-241ENST00000635861 NPIPA5A0A0B4J1W7 369 aa16.37■□□□□ 0.21
CLN3-241ENST00000635861 TRIM64A6NGJ6 449 aa16.37■□□□□ 0.21
CLN3-241ENST00000635861 TRIM64BA6NI03 449 aa16.37■□□□□ 0.21
CLN3-241ENST00000635861 NPIPA7E9PJI5 369 aa16.37■□□□□ 0.21
CLN3-241ENST00000635861 OIP5O43482 229 aa16.37■□□□□ 0.21
CLN3-241ENST00000635861 DNAJA2O60884 412 aa16.37■□□□□ 0.21
CLN3-241ENST00000635861 AGR2O95994 175 aa16.37■□□□□ 0.21
CLN3-241ENST00000635861 BPGMP07738 259 aa16.37■□□□□ 0.21
CLN3-241ENST00000635861 GUSBP08236 651 aa16.37■□□□□ 0.21
CLN3-241ENST00000635861 NPIPA8P0DM63 369 aa16.37■□□□□ 0.21
CLN3-241ENST00000635861 RPS4XP62701 263 aaKnown RBP16.37■□□□□ 0.21
CLN3-241ENST00000635861 HBA1P69905 142 aa16.37■□□□□ 0.21
CLN3-241ENST00000635861 EMX2Q04743 252 aa16.37■□□□□ 0.21
CLN3-241ENST00000635861 ITGADQ13349 1161 aa16.37■□□□□ 0.21
CLN3-241ENST00000635861 ZNF141Q15928 474 aa16.37■□□□□ 0.21
CLN3-241ENST00000635861 NCMAPQ5T1S8 102 aa16.37■□□□□ 0.21
CLN3-241ENST00000635861 DNAJC14Q6Y2X3 702 aaPredicted RBP16.37■□□□□ 0.21
CLN3-241ENST00000635861 NUFIP2Q7Z417 695 aaKnown RBP16.37■□□□□ 0.21
CLN3-241ENST00000635861 KRTCAP2Q8N6L1 136 aa16.37■□□□□ 0.21
CLN3-241ENST00000635861 ZNF614Q8N883 585 aa16.37■□□□□ 0.21
CLN3-241ENST00000635861 AKAP1Q92667 903 aaKnown RBP eCLIP16.37■□□□□ 0.21
CLN3-241ENST00000635861 KISS1RQ969F8 398 aaPredicted RBP16.37■□□□□ 0.21
CLN3-241ENST00000635861 FBXW5Q969U6 566 aa16.37■□□□□ 0.21
CLN3-241ENST00000635861 PSD2Q9BQI7 771 aa16.37■□□□□ 0.21
CLN3-241ENST00000635861 LAT2Q9GZY6 243 aa16.37■□□□□ 0.21
CLN3-241ENST00000635861 KCNE3Q9Y6H6 103 aa16.37■□□□□ 0.21
CLN3-241ENST00000635861 SERINC4A6NH21 518 aa16.36■□□□□ 0.21
CLN3-241ENST00000635861 RNASET2O00584 256 aaKnown RBP16.36■□□□□ 0.21
CLN3-241ENST00000635861 SMAD7O15105 426 aaKnown RBP16.36■□□□□ 0.21
CLN3-241ENST00000635861 SPAG7O75391 227 aa16.36■□□□□ 0.21
CLN3-241ENST00000635861 STX11O75558 287 aa16.36■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 74.7 ms