RNA–Protein interactions for RNA: ENST00000625916.1

SCN1A-208, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 4

Gene SCN1A, Length 560 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-208ENST00000625916 CCDC43Q96MW1 224 aaKnown RBP1.23□□□□□ -2.21
SCN1A-208ENST00000625916 TMEM121Q9BTD3 319 aa1.23□□□□□ -2.21
SCN1A-208ENST00000625916 SRXN1Q9BYN0 137 aa1.23□□□□□ -2.21
SCN1A-208ENST00000625916 CHIAQ9BZP6 476 aa1.23□□□□□ -2.21
SCN1A-208ENST00000625916 POLR3FQ9H1D9 316 aaPredicted RBP1.23□□□□□ -2.21
SCN1A-208ENST00000625916 PPDPFQ9H3Y8 114 aa1.23□□□□□ -2.21
SCN1A-208ENST00000625916 POLD4Q9HCU8 107 aa1.23□□□□□ -2.21
SCN1A-208ENST00000625916 MID1IP1Q9NPA3 183 aa1.23□□□□□ -2.21
SCN1A-208ENST00000625916 UTP6Q9NYH9 597 aaKnown RBP1.23□□□□□ -2.21
SCN1A-208ENST00000625916 CYP39A1Q9NYL5 469 aa1.23□□□□□ -2.21
SCN1A-208ENST00000625916 RBAKQ9NYW8 714 aaPredicted RBP1.23□□□□□ -2.21
SCN1A-208ENST00000625916 RIMS3Q9UJD0 308 aa1.23□□□□□ -2.21
SCN1A-208ENST00000625916 PLA2G4CQ9UP65 541 aa1.23□□□□□ -2.21
SCN1A-208ENST00000625916 PLLPQ9Y342 182 aa1.23□□□□□ -2.21
SCN1A-208ENST00000625916 STRAPQ9Y3F4 350 aaKnown RBP1.23□□□□□ -2.21
SCN1A-208ENST00000625916 TEX264Q9Y6I9 313 aa1.23□□□□□ -2.21
SCN1A-208ENST00000625916 TTC21BQ7Z4L5 1316 aa1.22□□□□□ -2.21
SCN1A-208ENST00000625916 LOC100131303A0A0U1RQF7 123 aa1.22□□□□□ -2.21
SCN1A-208ENST00000625916 IQANK1A0A1B0GTG1 560 aa1.22□□□□□ -2.21
SCN1A-208ENST00000625916 FAM170AA1A519 330 aa1.22□□□□□ -2.21
SCN1A-208ENST00000625916 SYCE3A1L190 88 aa1.22□□□□□ -2.21
SCN1A-208ENST00000625916 ZNF233A6NK53 670 aa1.22□□□□□ -2.21
SCN1A-208ENST00000625916 COLCA2A8K830 154 aa1.22□□□□□ -2.21
SCN1A-208ENST00000625916 LGALS8O00214 317 aa1.22□□□□□ -2.21
SCN1A-208ENST00000625916 VEGFDO43915 354 aa1.22□□□□□ -2.21
SCN1A-208ENST00000625916 STX11O75558 287 aa1.22□□□□□ -2.21
SCN1A-208ENST00000625916 PLEKP08567 350 aaPredicted RBP1.22□□□□□ -2.21
SCN1A-208ENST00000625916 ANXA4P09525 319 aaPredicted RBP1.22□□□□□ -2.21
SCN1A-208ENST00000625916 RALAP11233 206 aa1.22□□□□□ -2.21
SCN1A-208ENST00000625916 UQCRBP14927 111 aa1.22□□□□□ -2.21
SCN1A-208ENST00000625916 GCFC2P16383 781 aaKnown RBP1.22□□□□□ -2.21
SCN1A-208ENST00000625916 XRCC1P18887 633 aaPredicted RBP1.22□□□□□ -2.21
SCN1A-208ENST00000625916 COX7A1P24310 79 aa1.22□□□□□ -2.21
SCN1A-208ENST00000625916 PRDX6P30041 224 aa1.22□□□□□ -2.21
SCN1A-208ENST00000625916 PRDX3P30048 256 aaKnown RBP1.22□□□□□ -2.21
SCN1A-208ENST00000625916 PRDX2P32119 198 aa1.22□□□□□ -2.21
SCN1A-208ENST00000625916 HSPA1LP34931 641 aa1.22□□□□□ -2.21
SCN1A-208ENST00000625916 PRPS1P60891 318 aa1.22□□□□□ -2.21
SCN1A-208ENST00000625916 SNX1Q13596 522 aa1.22□□□□□ -2.21
SCN1A-208ENST00000625916 DEFB116Q30KQ4 102 aa1.22□□□□□ -2.21
SCN1A-208ENST00000625916 C2orf76Q3KRA6 126 aa1.22□□□□□ -2.21
SCN1A-208ENST00000625916 RABGAP1LQ5R372 815 aa1.22□□□□□ -2.21
SCN1A-208ENST00000625916 ATF7IP2Q5U623 682 aa1.22□□□□□ -2.21
SCN1A-208ENST00000625916 UNQ9370/PRO34162Q6UXP9 181 aa1.22□□□□□ -2.21
SCN1A-208ENST00000625916 C1orf186Q6ZWK4 172 aa1.22□□□□□ -2.21
SCN1A-208ENST00000625916 LPCAT2Q7L5N7 544 aa1.22□□□□□ -2.21
SCN1A-208ENST00000625916 NRMQ8IXM6 262 aa1.22□□□□□ -2.21
SCN1A-208ENST00000625916 STKLD1Q8NE28 680 aa1.22□□□□□ -2.21
SCN1A-208ENST00000625916 ANKRD20A12PQ8NF67 263 aa1.22□□□□□ -2.21
SCN1A-208ENST00000625916 OR6X1Q8NH79 312 aa1.22□□□□□ -2.21
SCN1A-208ENST00000625916 FAM151AQ8WW52 585 aa1.22□□□□□ -2.21
SCN1A-208ENST00000625916 SLC5A11Q8WWX8 675 aa1.22□□□□□ -2.21
SCN1A-208ENST00000625916 NCLNQ969V3 563 aa1.22□□□□□ -2.21
SCN1A-208ENST00000625916 UPRTQ96BW1 309 aa1.22□□□□□ -2.21
SCN1A-208ENST00000625916 FEM1AQ9BSK4 669 aa1.22□□□□□ -2.21
SCN1A-208ENST00000625916 MAGT1Q9H0U3 335 aa1.22□□□□□ -2.21
SCN1A-208ENST00000625916 SLC25A51Q9H1U9 297 aa1.22□□□□□ -2.21
SCN1A-208ENST00000625916 TPK1Q9H3S4 243 aa1.22□□□□□ -2.21
SCN1A-208ENST00000625916 P2RX2Q9UBL9 471 aa1.22□□□□□ -2.21
SCN1A-208ENST00000625916 KCNN3Q9UGI6 736 aa1.22□□□□□ -2.21
SCN1A-208ENST00000625916 DNPEPQ9ULA0 475 aa1.22□□□□□ -2.21
SCN1A-208ENST00000625916 TP53TG5Q9Y2B4 290 aa1.22□□□□□ -2.21
SCN1A-208ENST00000625916 PCM1Q15154 2024 aa1.22□□□□□ -2.21
SCN1A-208ENST00000625916 IGKV3D-11A0A0A0MRZ8 115 aa1.21□□□□□ -2.22
SCN1A-208ENST00000625916 HELTA6NFD8 242 aa1.21□□□□□ -2.22
SCN1A-208ENST00000625916 ARHGAP42A6NI28 874 aa1.21□□□□□ -2.22
SCN1A-208ENST00000625916 OR6C65A6NJZ3 312 aa1.21□□□□□ -2.22
SCN1A-208ENST00000625916 ZNF705EA8MWA4 302 aaPredicted RBP1.21□□□□□ -2.22
SCN1A-208ENST00000625916 C11orf94C9JXX5 98 aa1.21□□□□□ -2.22
SCN1A-208ENST00000625916 FCN1O00602 326 aa1.21□□□□□ -2.22
SCN1A-208ENST00000625916 ADAM12O43184 909 aa1.21□□□□□ -2.22
SCN1A-208ENST00000625916 CBR3O75828 277 aa1.21□□□□□ -2.22
SCN1A-208ENST00000625916 CXCL10P02778 98 aa1.21□□□□□ -2.22
SCN1A-208ENST00000625916 PCCBP05166 539 aa1.21□□□□□ -2.22
SCN1A-208ENST00000625916 HBQ1P09105 142 aa1.21□□□□□ -2.22
SCN1A-208ENST00000625916 PNMTP11086 282 aa1.21□□□□□ -2.22
SCN1A-208ENST00000625916 ANXA3P12429 323 aa1.21□□□□□ -2.22
SCN1A-208ENST00000625916 NTHL1P78549 312 aa1.21□□□□□ -2.22
SCN1A-208ENST00000625916 ACTN3Q08043 901 aaPredicted RBP1.21□□□□□ -2.22
SCN1A-208ENST00000625916 RGS1Q08116 209 aa1.21□□□□□ -2.22
SCN1A-208ENST00000625916 FAM83EQ2M2I3 478 aa1.21□□□□□ -2.22
SCN1A-208ENST00000625916 CCDC40Q4G0X9 1142 aa1.21□□□□□ -2.22
SCN1A-208ENST00000625916 PRR9Q5T870 116 aa1.21□□□□□ -2.22
SCN1A-208ENST00000625916 WDR88Q6ZMY6 472 aa1.21□□□□□ -2.22
SCN1A-208ENST00000625916 TMEM26Q6ZUK4 368 aa1.21□□□□□ -2.22
SCN1A-208ENST00000625916 ARMCX2Q7L311 632 aa1.21□□□□□ -2.22
SCN1A-208ENST00000625916 MIER3Q7Z3K6 550 aa1.21□□□□□ -2.22
SCN1A-208ENST00000625916 MTURNQ8N3F0 131 aa1.21□□□□□ -2.22
SCN1A-208ENST00000625916 SPC24Q8NBT2 197 aa1.21□□□□□ -2.22
SCN1A-208ENST00000625916 OR10G2Q8NGC3 310 aa1.21□□□□□ -2.22
SCN1A-208ENST00000625916 URGCPQ8TCY9 931 aa1.21□□□□□ -2.22
SCN1A-208ENST00000625916 AENQ8WTP8 325 aaKnown RBP1.21□□□□□ -2.22
SCN1A-208ENST00000625916 TMEM158Q8WZ71 300 aa1.21□□□□□ -2.22
SCN1A-208ENST00000625916 FRZBQ92765 325 aa1.21□□□□□ -2.22
SCN1A-208ENST00000625916 ATP6V0A1Q93050 837 aa1.21□□□□□ -2.22
SCN1A-208ENST00000625916 CEP170P1Q96L14 293 aa1.21□□□□□ -2.22
SCN1A-208ENST00000625916 RNF126Q9BV68 326 aa1.21□□□□□ -2.22
SCN1A-208ENST00000625916 CRNKL1Q9BZJ0 848 aaKnown RBP1.21□□□□□ -2.22
SCN1A-208ENST00000625916 TMEM231Q9H6L2 316 aa1.21□□□□□ -2.22
SCN1A-208ENST00000625916 SLC25A22Q9H936 323 aa1.21□□□□□ -2.22
Retrieved 100 of 20,778 RNA–protein pairs in 50.1 ms