RNA–Protein interactions for RNA: ENST00000616140.1

CPSF1-212, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF1, Length 4,494 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-212ENST00000616140 RNF215Q9Y6U7 377 aa13.11□□□□□ -0.31
CPSF1-212ENST00000616140 SPAG17Q6Q759 2223 aa13.11□□□□□ -0.31
CPSF1-212ENST00000616140 KIR2DS5A0A0G2JLQ3 304 aa13.11□□□□□ -0.31
CPSF1-212ENST00000616140 A0A0G2JNG1 304 aa13.11□□□□□ -0.31
CPSF1-212ENST00000616140 H3BQ06 376 aaPredicted RBP13.11□□□□□ -0.31
CPSF1-212ENST00000616140 KIR2DS3K7RE56 304 aa13.11□□□□□ -0.31
CPSF1-212ENST00000616140 SYNGR4O95473 234 aa13.11□□□□□ -0.31
CPSF1-212ENST00000616140 GJA4P35212 333 aa13.11□□□□□ -0.31
CPSF1-212ENST00000616140 SLC1A3P43003 542 aa13.11□□□□□ -0.31
CPSF1-212ENST00000616140 HNRNPFP52597 415 aaKnown RBP13.11□□□□□ -0.31
CPSF1-212ENST00000616140 ILKQ13418 452 aa13.11□□□□□ -0.31
CPSF1-212ENST00000616140 KIR2DS5Q14953 304 aa13.11□□□□□ -0.31
CPSF1-212ENST00000616140 ADAMTS14Q8WXS8 1223 aa13.11□□□□□ -0.31
CPSF1-212ENST00000616140 RBM24Q9BX46 236 aaKnown RBP13.11□□□□□ -0.31
CPSF1-212ENST00000616140 TNFRSF12AQ9NP84 129 aa13.11□□□□□ -0.31
CPSF1-212ENST00000616140 NME7Q9Y5B8 376 aa13.11□□□□□ -0.31
CPSF1-212ENST00000616140 PKD1L3Q7Z443 1732 aa13.11□□□□□ -0.31
CPSF1-212ENST00000616140 NINQ8N4C6 2090 aa13.1□□□□□ -0.31
CPSF1-212ENST00000616140 GOSR2O14653 212 aa13.1□□□□□ -0.31
CPSF1-212ENST00000616140 RFPL3O75679 317 aa13.1□□□□□ -0.31
CPSF1-212ENST00000616140 KNG1P01042 644 aa13.1□□□□□ -0.31
CPSF1-212ENST00000616140 APEX1P27695 318 aaKnown RBP13.1□□□□□ -0.31
CPSF1-212ENST00000616140 PTPN6P29350 595 aa13.1□□□□□ -0.31
CPSF1-212ENST00000616140 LIPAP38571 399 aa13.1□□□□□ -0.31
CPSF1-212ENST00000616140 MMP12P39900 470 aa13.1□□□□□ -0.31
CPSF1-212ENST00000616140 PFN3P60673 137 aa13.1□□□□□ -0.31
CPSF1-212ENST00000616140 FAM111BQ6SJ93 734 aa13.1□□□□□ -0.31
CPSF1-212ENST00000616140 OLIG3Q7RTU3 272 aa13.1□□□□□ -0.31
CPSF1-212ENST00000616140 RTN4RL1Q86UN2 441 aaPredicted RBP13.1□□□□□ -0.31
CPSF1-212ENST00000616140 GTPBP8Q8N3Z3 284 aaPredicted RBP13.1□□□□□ -0.31
CPSF1-212ENST00000616140 OR5H2Q8NGV7 314 aa13.1□□□□□ -0.31
CPSF1-212ENST00000616140 RLN3Q8WXF3 142 aa13.1□□□□□ -0.31
CPSF1-212ENST00000616140 FAM3CQ92520 227 aa13.1□□□□□ -0.31
CPSF1-212ENST00000616140 ARRDC3Q96B67 414 aa13.1□□□□□ -0.31
CPSF1-212ENST00000616140 ZNF587Q96SQ5 575 aaPredicted RBP13.1□□□□□ -0.31
CPSF1-212ENST00000616140 SLA2Q9H6Q3 261 aa13.1□□□□□ -0.31
CPSF1-212ENST00000616140 ASB1Q9Y576 335 aa13.1□□□□□ -0.31
CPSF1-212ENST00000616140 MYH14Q7Z406 1995 aaKnown RBP13.1□□□□□ -0.31
CPSF1-212ENST00000616140 NAP1L6A6NFF2 107 aa13.1□□□□□ -0.31
CPSF1-212ENST00000616140 ZNF736B4DX44 427 aaPredicted RBP13.1□□□□□ -0.31
CPSF1-212ENST00000616140 PRAMEF26H0Y7S4 382 aa13.1□□□□□ -0.31
CPSF1-212ENST00000616140 SLC16A7O60669 478 aa13.1□□□□□ -0.31
CPSF1-212ENST00000616140 DCNP07585 359 aaKnown RBP13.1□□□□□ -0.31
CPSF1-212ENST00000616140 NPPBP16860 134 aa13.1□□□□□ -0.31
CPSF1-212ENST00000616140 EIF2B1Q14232 305 aaKnown RBP13.1□□□□□ -0.31
CPSF1-212ENST00000616140 P2RY14Q15391 338 aa13.1□□□□□ -0.31
CPSF1-212ENST00000616140 RPE65Q16518 533 aa13.1□□□□□ -0.31
CPSF1-212ENST00000616140 ADPRMQ3LIE5 342 aa13.1□□□□□ -0.31
CPSF1-212ENST00000616140 SYT6Q5T7P8 510 aaPredicted RBP13.1□□□□□ -0.31
CPSF1-212ENST00000616140 FBXO46Q6PJ61 603 aaPredicted RBP13.1□□□□□ -0.31
CPSF1-212ENST00000616140 KCTD20Q7Z5Y7 419 aa13.1□□□□□ -0.31
CPSF1-212ENST00000616140 UEVLDQ8IX04 471 aa13.1□□□□□ -0.31
CPSF1-212ENST00000616140 ZNF611Q8N823 705 aa13.1□□□□□ -0.31
CPSF1-212ENST00000616140 MS4A8Q9BY19 250 aa13.1□□□□□ -0.31
CPSF1-212ENST00000616140 EIF5A2Q9GZV4 153 aaKnown RBP13.1□□□□□ -0.31
CPSF1-212ENST00000616140 MFFQ9GZY8 342 aa13.1□□□□□ -0.31
CPSF1-212ENST00000616140 APMAPQ9HDC9 416 aa13.1□□□□□ -0.31
CPSF1-212ENST00000616140 ADAM29Q9UKF5 820 aa13.1□□□□□ -0.31
CPSF1-212ENST00000616140 H0YGG7 62 aa13.1□□□□□ -0.31
CPSF1-212ENST00000616140 NCR1O76036 304 aa13.1□□□□□ -0.31
CPSF1-212ENST00000616140 ARF3P61204 181 aaPredicted RBP13.1□□□□□ -0.31
CPSF1-212ENST00000616140 DLX2Q07687 328 aaPredicted RBP13.1□□□□□ -0.31
CPSF1-212ENST00000616140 ERV3-1Q14264 604 aa13.1□□□□□ -0.31
CPSF1-212ENST00000616140 SMAD2Q15796 467 aaKnown RBP13.1□□□□□ -0.31
CPSF1-212ENST00000616140 BCDIN3DQ7Z5W3 292 aaKnown RBP13.1□□□□□ -0.31
CPSF1-212ENST00000616140 OR6T1Q8NGN1 323 aa13.1□□□□□ -0.31
CPSF1-212ENST00000616140 SYNPRQ8TBG9 265 aa13.1□□□□□ -0.31
CPSF1-212ENST00000616140 FOXN4Q96NZ1 517 aa13.1□□□□□ -0.31
CPSF1-212ENST00000616140 NKX2-4Q9H2Z4 354 aa13.1□□□□□ -0.31
CPSF1-212ENST00000616140 NT5DC2Q9H857 520 aa13.1□□□□□ -0.31
CPSF1-212ENST00000616140 ALS2Q96Q42 1657 aa13.1□□□□□ -0.31
CPSF1-212ENST00000616140 A0A1B0GV50 99 aa13.09□□□□□ -0.31
CPSF1-212ENST00000616140 CDC14CA4D256 554 aa13.09□□□□□ -0.31
CPSF1-212ENST00000616140 PRAF2O60831 178 aa13.09□□□□□ -0.31
CPSF1-212ENST00000616140 MT-ND4P03905 459 aa13.09□□□□□ -0.31
CPSF1-212ENST00000616140 SLC6A8P48029 635 aa13.09□□□□□ -0.31
CPSF1-212ENST00000616140 TM4SF4P48230 202 aa13.09□□□□□ -0.31
CPSF1-212ENST00000616140 ISL1P61371 349 aa13.09□□□□□ -0.31
CPSF1-212ENST00000616140 ACVR1Q04771 509 aa13.09□□□□□ -0.31
CPSF1-212ENST00000616140 CST9Q5W186 159 aa13.09□□□□□ -0.31
CPSF1-212ENST00000616140 C18orf63Q68DL7 685 aa13.09□□□□□ -0.31
CPSF1-212ENST00000616140 ZNF704Q6ZNC4 412 aaPredicted RBP13.09□□□□□ -0.31
CPSF1-212ENST00000616140 GPR137CQ8N3F9 429 aa13.09□□□□□ -0.31
CPSF1-212ENST00000616140 TOMM40LQ969M1 308 aa13.09□□□□□ -0.31
CPSF1-212ENST00000616140 CRB3Q9BUF7 120 aa13.09□□□□□ -0.31
CPSF1-212ENST00000616140 P2RY12Q9H244 342 aa13.09□□□□□ -0.31
CPSF1-212ENST00000616140 FTSJ1Q9UET6 329 aa13.09□□□□□ -0.31
CPSF1-212ENST00000616140 RCE1Q9Y256 329 aa13.09□□□□□ -0.31
CPSF1-212ENST00000616140 PRKRAO75569 313 aaKnown RBP13.09□□□□□ -0.31
CPSF1-212ENST00000616140 SLCO2B1O94956 709 aa13.09□□□□□ -0.31
CPSF1-212ENST00000616140 DIRAS3O95661 229 aa13.09□□□□□ -0.31
CPSF1-212ENST00000616140 F13BP05160 661 aa13.09□□□□□ -0.31
CPSF1-212ENST00000616140 HMGA1P17096 107 aaKnown RBP13.09□□□□□ -0.31
CPSF1-212ENST00000616140 ERVFC1P60507 584 aa13.09□□□□□ -0.31
CPSF1-212ENST00000616140 CSNK2A1P68400 391 aaPredicted RBP13.09□□□□□ -0.31
CPSF1-212ENST00000616140 DEFB133Q30KQ1 61 aa13.09□□□□□ -0.31
CPSF1-212ENST00000616140 ZNF852Q6ZMS4 543 aa13.09□□□□□ -0.31
CPSF1-212ENST00000616140 ZNF765Q7L2R6 523 aa13.09□□□□□ -0.31
CPSF1-212ENST00000616140 COMMD7Q86VX2 200 aa13.09□□□□□ -0.31
CPSF1-212ENST00000616140 CSNK2A3Q8NEV1 391 aa13.09□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms