RNA–Protein interactions for RNA: ENST00000599538.5

VRK3-217, Transcript of vaccinia related kinase 3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene VRK3, Length 2,126 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-217ENST00000599538 BMP8AQ7Z5Y6 402 aa13.31□□□□□ -0.28
VRK3-217ENST00000599538 LSMEM1Q8N8F7 131 aa13.31□□□□□ -0.28
VRK3-217ENST00000599538 ZFP41Q8N8Y5 198 aa13.31□□□□□ -0.28
VRK3-217ENST00000599538 NACC2Q96BF6 587 aa13.31□□□□□ -0.28
VRK3-217ENST00000599538 ZNF501Q96CX3 271 aaPredicted RBP13.31□□□□□ -0.28
VRK3-217ENST00000599538 DACH2Q96NX9 599 aa13.31□□□□□ -0.28
VRK3-217ENST00000599538 TNFRSF13CQ96RJ3 184 aa13.31□□□□□ -0.28
VRK3-217ENST00000599538 G6PC3Q9BUM1 346 aa13.31□□□□□ -0.28
VRK3-217ENST00000599538 PRRG3Q9BZD7 231 aa13.31□□□□□ -0.28
VRK3-217ENST00000599538 C6orf62Q9GZU0 229 aaPredicted RBP13.31□□□□□ -0.28
VRK3-217ENST00000599538 RERGLQ9H628 205 aa13.31□□□□□ -0.28
VRK3-217ENST00000599538 HMG20AQ9NP66 347 aa13.31□□□□□ -0.28
VRK3-217ENST00000599538 FGF21Q9NSA1 209 aa13.31□□□□□ -0.28
VRK3-217ENST00000599538 C14orf105Q9NVL8 296 aa13.31□□□□□ -0.28
VRK3-217ENST00000599538 SEMA5BQ9P283 1151 aa13.31□□□□□ -0.28
VRK3-217ENST00000599538 WDFY3Q8IZQ1 3526 aa13.31□□□□□ -0.28
VRK3-217ENST00000599538 CDC14CA4D256 554 aa13.3□□□□□ -0.28
VRK3-217ENST00000599538 SERINC4A6NH21 518 aa13.3□□□□□ -0.28
VRK3-217ENST00000599538 PTP4A3O75365 173 aa13.3□□□□□ -0.28
VRK3-217ENST00000599538 DDAH2O95865 285 aa13.3□□□□□ -0.28
VRK3-217ENST00000599538 MYL12AP19105 171 aa13.3□□□□□ -0.28
VRK3-217ENST00000599538 ENDOUP21128 410 aaKnown RBP13.3□□□□□ -0.28
VRK3-217ENST00000599538 CTBP2P56545 445 aa13.3□□□□□ -0.28
VRK3-217ENST00000599538 WNT4P56705 351 aa13.3□□□□□ -0.28
VRK3-217ENST00000599538 CRYZQ08257 329 aaKnown RBP13.3□□□□□ -0.28
VRK3-217ENST00000599538 NXNL2Q5VZ03 156 aa13.3□□□□□ -0.28
VRK3-217ENST00000599538 LINC00114Q6XXX2 140 aa13.3□□□□□ -0.28
VRK3-217ENST00000599538 Q6ZNX1 250 aa13.3□□□□□ -0.28
VRK3-217ENST00000599538 SHISA6Q6ZSJ9 500 aa13.3□□□□□ -0.28
VRK3-217ENST00000599538 CXXC5Q7LFL8 322 aaKnown RBP13.3□□□□□ -0.28
VRK3-217ENST00000599538 PRR22Q8IZ63 422 aa13.3□□□□□ -0.28
VRK3-217ENST00000599538 SIRT6Q8N6T7 355 aa13.3□□□□□ -0.28
VRK3-217ENST00000599538 ZNF485Q8NCK3 441 aa13.3□□□□□ -0.28
VRK3-217ENST00000599538 KBTBD8Q8NFY9 601 aa13.3□□□□□ -0.28
VRK3-217ENST00000599538 ZNF578Q96N58 590 aaPredicted RBP13.3□□□□□ -0.28
VRK3-217ENST00000599538 MESP1Q9BRJ9 268 aa13.3□□□□□ -0.28
VRK3-217ENST00000599538 RACGAP1Q9H0H5 632 aa13.3□□□□□ -0.28
VRK3-217ENST00000599538 NDUFB11Q9NX14 153 aa13.3□□□□□ -0.28
VRK3-217ENST00000599538 SPIN1Q9Y657 262 aaPredicted RBP13.3□□□□□ -0.28
VRK3-217ENST00000599538 C17orf51A8MQB3 221 aa13.3□□□□□ -0.28
VRK3-217ENST00000599538 IGKV3-11P04433 115 aa13.3□□□□□ -0.28
VRK3-217ENST00000599538 CLUP10909 449 aa13.3□□□□□ -0.28
VRK3-217ENST00000599538 BMP7P18075 431 aa13.3□□□□□ -0.28
VRK3-217ENST00000599538 NOS3P29474 1203 aa13.3□□□□□ -0.28
VRK3-217ENST00000599538 GALNSP34059 522 aa13.3□□□□□ -0.28
VRK3-217ENST00000599538 SLC1A3P43003 542 aa13.3□□□□□ -0.28
VRK3-217ENST00000599538 GPLD1P80108 840 aa13.3□□□□□ -0.28
VRK3-217ENST00000599538 ATP1A4Q13733 1029 aa13.3□□□□□ -0.28
VRK3-217ENST00000599538 C1DQ13901 141 aaKnown RBP13.3□□□□□ -0.28
VRK3-217ENST00000599538 CPEB4Q17RY0 729 aaKnown RBP eCLIP13.3□□□□□ -0.28
VRK3-217ENST00000599538 KLHL26Q53HC5 615 aa13.3□□□□□ -0.28
VRK3-217ENST00000599538 PERM1Q5SV97 790 aa13.3□□□□□ -0.28
VRK3-217ENST00000599538 LYSMD4Q5XG99 296 aa13.3□□□□□ -0.28
VRK3-217ENST00000599538 GUSBP11Q6P575 273 aa13.3□□□□□ -0.28
VRK3-217ENST00000599538 CBLN3Q6UW01 205 aa13.3□□□□□ -0.28
VRK3-217ENST00000599538 GPR135Q8IZ08 494 aa13.3□□□□□ -0.28
VRK3-217ENST00000599538 LNX2Q8N448 690 aa13.3□□□□□ -0.28
VRK3-217ENST00000599538 DEFB123Q8N688 67 aa13.3□□□□□ -0.28
VRK3-217ENST00000599538 LRRC17Q8N6Y2 441 aa13.3□□□□□ -0.28
VRK3-217ENST00000599538 SLC2A12Q8TD20 617 aa13.3□□□□□ -0.28
VRK3-217ENST00000599538 ZNF721Q8TF20 911 aa13.3□□□□□ -0.28
VRK3-217ENST00000599538 PTP4A1Q93096 173 aa13.3□□□□□ -0.28
VRK3-217ENST00000599538 DPYSL5Q9BPU6 564 aa13.3□□□□□ -0.28
VRK3-217ENST00000599538 NDC1Q9BTX1 674 aa13.3□□□□□ -0.28
VRK3-217ENST00000599538 IFT27Q9BW83 186 aa13.3□□□□□ -0.28
VRK3-217ENST00000599538 RTN4RQ9BZR6 473 aa13.3□□□□□ -0.28
VRK3-217ENST00000599538 TRIM2Q9C040 744 aa13.3□□□□□ -0.28
VRK3-217ENST00000599538 ZNF304Q9HCX3 659 aa13.3□□□□□ -0.28
VRK3-217ENST00000599538 MED17Q9NVC6 651 aa13.3□□□□□ -0.28
VRK3-217ENST00000599538 PRODH2Q9UF12 536 aa13.3□□□□□ -0.28
VRK3-217ENST00000599538 FBXL4Q9UKA2 621 aa13.3□□□□□ -0.28
VRK3-217ENST00000599538 CPED1A4D0V7 1026 aa13.29□□□□□ -0.28
VRK3-217ENST00000599538 PLD2O14939 933 aa13.29□□□□□ -0.28
VRK3-217ENST00000599538 HMGN1P05114 100 aa13.29□□□□□ -0.28
VRK3-217ENST00000599538 HTR1FP30939 366 aa13.29□□□□□ -0.28
VRK3-217ENST00000599538 RPS19P39019 145 aaKnown RBP13.29□□□□□ -0.28
VRK3-217ENST00000599538 TGM4P49221 684 aa13.29□□□□□ -0.28
VRK3-217ENST00000599538 ARRB1P49407 418 aaPredicted RBP13.29□□□□□ -0.28
VRK3-217ENST00000599538 PSMD7P51665 324 aa13.29□□□□□ -0.28
VRK3-217ENST00000599538 FOXK2Q01167 660 aa13.29□□□□□ -0.28
VRK3-217ENST00000599538 DSG2Q14126 1118 aa13.29□□□□□ -0.28
VRK3-217ENST00000599538 LINC00299Q6ZSB3 139 aa13.29□□□□□ -0.28
VRK3-217ENST00000599538 KANSL1Q7Z3B3 1105 aa13.29□□□□□ -0.28
VRK3-217ENST00000599538 OAFQ86UD1 273 aa13.29□□□□□ -0.28
VRK3-217ENST00000599538 CDK20Q8IZL9 346 aa13.29□□□□□ -0.28
VRK3-217ENST00000599538 CYB561A3Q8NBI2 242 aa13.29□□□□□ -0.28
VRK3-217ENST00000599538 OR52L1Q8NGH7 329 aa13.29□□□□□ -0.28
VRK3-217ENST00000599538 OR51G2Q8NGK0 314 aa13.29□□□□□ -0.28
VRK3-217ENST00000599538 MAFAQ8NHW3 353 aaPredicted RBP13.29□□□□□ -0.28
VRK3-217ENST00000599538 MVB12AQ96EY5 273 aa13.29□□□□□ -0.28
VRK3-217ENST00000599538 OR1F2PQ96R84 312 aa13.29□□□□□ -0.28
VRK3-217ENST00000599538 NUDT9Q9BW91 350 aa13.29□□□□□ -0.28
VRK3-217ENST00000599538 ASPNQ9BXN1 380 aa13.29□□□□□ -0.28
VRK3-217ENST00000599538 BARHL1Q9BZE3 327 aa13.29□□□□□ -0.28
VRK3-217ENST00000599538 WDR12Q9GZL7 423 aaKnown RBP13.29□□□□□ -0.28
VRK3-217ENST00000599538 NXF2Q9GZY0 626 aaKnown RBP13.29□□□□□ -0.28
VRK3-217ENST00000599538 MMP27Q9H306 513 aa13.29□□□□□ -0.28
VRK3-217ENST00000599538 MCCC2Q9HCC0 563 aa13.29□□□□□ -0.28
VRK3-217ENST00000599538 ENAMQ9NRM1 1142 aa13.29□□□□□ -0.28
VRK3-217ENST00000599538 CTSFQ9UBX1 484 aa13.29□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 44.4 ms