RNA–Protein interactions for RNA: ENST00000599342.5

VRK3-216, Transcript of vaccinia related kinase 3, humanhuman

TSL 3

Gene VRK3, Length 795 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-216ENST00000599342 PCNX3Q9H6A9 2034 aa8.73□□□□□ -1.01
VRK3-216ENST00000599342 SERINC4A6NH21 518 aa8.73□□□□□ -1.01
VRK3-216ENST00000599342 NPIPB9F8W1W9 429 aa8.73□□□□□ -1.01
VRK3-216ENST00000599342 H7C1Q1 480 aa8.73□□□□□ -1.01
VRK3-216ENST00000599342 RGS16O15492 202 aaPredicted RBP8.73□□□□□ -1.01
VRK3-216ENST00000599342 KLF4O43474 513 aa8.73□□□□□ -1.01
VRK3-216ENST00000599342 ITM2AO43736 263 aa8.73□□□□□ -1.01
VRK3-216ENST00000599342 STX11O75558 287 aa8.73□□□□□ -1.01
VRK3-216ENST00000599342 SNUPNO95149 360 aaKnown RBP8.73□□□□□ -1.01
VRK3-216ENST00000599342 AGR2O95994 175 aa8.73□□□□□ -1.01
VRK3-216ENST00000599342 CSTAP01040 98 aa8.73□□□□□ -1.01
VRK3-216ENST00000599342 SERPINE1P05121 402 aa8.73□□□□□ -1.01
VRK3-216ENST00000599342 HEXAP06865 529 aa8.73□□□□□ -1.01
VRK3-216ENST00000599342 MYZAPP0CAP1 466 aa8.73□□□□□ -1.01
VRK3-216ENST00000599342 IL32P24001 234 aa8.73□□□□□ -1.01
VRK3-216ENST00000599342 PTH2RP49190 550 aa8.73□□□□□ -1.01
VRK3-216ENST00000599342 ABCE1P61221 599 aaKnown RBP8.73□□□□□ -1.01
VRK3-216ENST00000599342 QPRTQ15274 297 aa8.73□□□□□ -1.01
VRK3-216ENST00000599342 ATAD3BQ5T9A4 648 aa8.73□□□□□ -1.01
VRK3-216ENST00000599342 WDR93Q6P2C0 686 aa8.73□□□□□ -1.01
VRK3-216ENST00000599342 C6orf120Q7Z4R8 191 aa8.73□□□□□ -1.01
VRK3-216ENST00000599342 TUSC5Q8IXB3 177 aa8.73□□□□□ -1.01
VRK3-216ENST00000599342 ZNF781Q8N8C0 355 aa8.73□□□□□ -1.01
VRK3-216ENST00000599342 VPS37AQ8NEZ2 397 aa8.73□□□□□ -1.01
VRK3-216ENST00000599342 TMEM234Q8WY98 164 aa8.73□□□□□ -1.01
VRK3-216ENST00000599342 S100PBPQ96BU1 408 aa8.73□□□□□ -1.01
VRK3-216ENST00000599342 ARSGQ96EG1 525 aa8.73□□□□□ -1.01
VRK3-216ENST00000599342 COX4I2Q96KJ9 171 aa8.73□□□□□ -1.01
VRK3-216ENST00000599342 GSX2Q9BZM3 304 aa8.73□□□□□ -1.01
VRK3-216ENST00000599342 OR51I1Q9H343 314 aa8.73□□□□□ -1.01
VRK3-216ENST00000599342 COQ10BQ9H8M1 238 aa8.73□□□□□ -1.01
VRK3-216ENST00000599342 NGBQ9NPG2 151 aa8.73□□□□□ -1.01
VRK3-216ENST00000599342 SERINC1Q9NRX5 453 aa8.73□□□□□ -1.01
VRK3-216ENST00000599342 KLHL9Q9P2J3 617 aa8.73□□□□□ -1.01
VRK3-216ENST00000599342 RAP2CQ9Y3L5 183 aa8.73□□□□□ -1.01
VRK3-216ENST00000599342 ZFHX3Q15911 3703 aa8.72□□□□□ -1.01
VRK3-216ENST00000599342 HRNRQ86YZ3 2850 aaPredicted RBP8.72□□□□□ -1.01
VRK3-216ENST00000599342 ITPR3Q14573 2671 aa8.72□□□□□ -1.01
VRK3-216ENST00000599342 IGHV3-15A0A0B4J1V0 119 aa8.72□□□□□ -1.01
VRK3-216ENST00000599342 A0A1W2PNR3 127 aa8.72□□□□□ -1.01
VRK3-216ENST00000599342 HS3ST1O14792 307 aa8.72□□□□□ -1.01
VRK3-216ENST00000599342 TM9SF1O15321 606 aa8.72□□□□□ -1.01
VRK3-216ENST00000599342 BIRC5O15392 142 aa8.72□□□□□ -1.01
VRK3-216ENST00000599342 EFNA2O43921 213 aa8.72□□□□□ -1.01
VRK3-216ENST00000599342 TMCC2O75069 709 aa8.72□□□□□ -1.01
VRK3-216ENST00000599342 GCM2O75603 506 aaPredicted RBP8.72□□□□□ -1.01
VRK3-216ENST00000599342 NTN1O95631 604 aa8.72□□□□□ -1.01
VRK3-216ENST00000599342 YES1P07947 543 aa8.72□□□□□ -1.01
VRK3-216ENST00000599342 UBTFL6P0CB48 400 aaPredicted RBP8.72□□□□□ -1.01
VRK3-216ENST00000599342 NID1P14543 1247 aa8.72□□□□□ -1.01
VRK3-216ENST00000599342 PGCP20142 388 aa8.72□□□□□ -1.01
VRK3-216ENST00000599342 ENPP1P22413 925 aa8.72□□□□□ -1.01
VRK3-216ENST00000599342 RPL14P50914 215 aaKnown RBP8.72□□□□□ -1.01
VRK3-216ENST00000599342 RAC3P60763 192 aa8.72□□□□□ -1.01
VRK3-216ENST00000599342 HPCAP84074 193 aa8.72□□□□□ -1.01
VRK3-216ENST00000599342 SKP2Q13309 424 aa8.72□□□□□ -1.01
VRK3-216ENST00000599342 CAPRIN1Q14444 709 aaKnown RBP8.72□□□□□ -1.01
VRK3-216ENST00000599342 ZNF141Q15928 474 aa8.72□□□□□ -1.01
VRK3-216ENST00000599342 DPY19L1Q2PZI1 675 aa8.72□□□□□ -1.01
VRK3-216ENST00000599342 ARHGAP11BQ3KRB8 267 aa8.72□□□□□ -1.01
VRK3-216ENST00000599342 TIGD2Q4W5G0 525 aa8.72□□□□□ -1.01
VRK3-216ENST00000599342 SLC25A53Q5H9E4 307 aa8.72□□□□□ -1.01
VRK3-216ENST00000599342 SFRP5Q5T4F7 317 aa8.72□□□□□ -1.01
VRK3-216ENST00000599342 ANXA8L1Q5VT79 327 aa8.72□□□□□ -1.01
VRK3-216ENST00000599342 EIF3MQ7L2H7 374 aaKnown RBP8.72□□□□□ -1.01
VRK3-216ENST00000599342 NUFIP2Q7Z417 695 aaKnown RBP8.72□□□□□ -1.01
VRK3-216ENST00000599342 GABRG1Q8N1C3 465 aa8.72□□□□□ -1.01
VRK3-216ENST00000599342 CLEC4FQ8N1N0 589 aa8.72□□□□□ -1.01
VRK3-216ENST00000599342 MREGQ8N565 214 aa8.72□□□□□ -1.01
VRK3-216ENST00000599342 OR8J2Q8NGG1 315 aa8.72□□□□□ -1.01
VRK3-216ENST00000599342 ST8SIA1Q92185 356 aa8.72□□□□□ -1.01
VRK3-216ENST00000599342 AKAP1Q92667 903 aaKnown RBP eCLIP8.72□□□□□ -1.01
VRK3-216ENST00000599342 KISS1RQ969F8 398 aaPredicted RBP8.72□□□□□ -1.01
VRK3-216ENST00000599342 OR5B2Q96R09 309 aa8.72□□□□□ -1.01
VRK3-216ENST00000599342 USB1Q9BQ65 265 aaKnown RBP8.72□□□□□ -1.01
VRK3-216ENST00000599342 THUMPD3Q9BV44 507 aaKnown RBP8.72□□□□□ -1.01
VRK3-216ENST00000599342 TMEM109Q9BVC6 243 aa8.72□□□□□ -1.01
VRK3-216ENST00000599342 ZNF350Q9GZX5 532 aa8.72□□□□□ -1.01
VRK3-216ENST00000599342 LAT2Q9GZY6 243 aa8.72□□□□□ -1.01
VRK3-216ENST00000599342 CENPHQ9H3R5 247 aa8.72□□□□□ -1.01
VRK3-216ENST00000599342 SERHL2Q9H4I8 314 aa8.72□□□□□ -1.01
VRK3-216ENST00000599342 ESRP2Q9H6T0 727 aaKnown RBP8.72□□□□□ -1.01
VRK3-216ENST00000599342 AKTIPQ9H8T0 292 aa8.72□□□□□ -1.01
VRK3-216ENST00000599342 SSU72Q9NP77 194 aaKnown RBP8.72□□□□□ -1.01
VRK3-216ENST00000599342 MKLN1Q9UL63 735 aa8.72□□□□□ -1.01
VRK3-216ENST00000599342 SPIN1Q9Y657 262 aaPredicted RBP8.72□□□□□ -1.01
VRK3-216ENST00000599342 PRSS51A0A1B0GVH4 220 aa8.71□□□□□ -1.02
VRK3-216ENST00000599342 SMAD7O15105 426 aaKnown RBP8.71□□□□□ -1.02
VRK3-216ENST00000599342 CLOCKO15516 846 aa8.71□□□□□ -1.02
VRK3-216ENST00000599342 KIAA0513O60268 411 aa8.71□□□□□ -1.02
VRK3-216ENST00000599342 FCMRO60667 390 aa8.71□□□□□ -1.02
VRK3-216ENST00000599342 UGT2B17O75795 530 aa8.71□□□□□ -1.02
VRK3-216ENST00000599342 CPSF4O95639 269 aaKnown RBP8.71□□□□□ -1.02
VRK3-216ENST00000599342 PLAUP00749 431 aa8.71□□□□□ -1.02
VRK3-216ENST00000599342 ADAP00813 363 aa8.71□□□□□ -1.02
VRK3-216ENST00000599342 OR12D1P0DN82 309 aa8.71□□□□□ -1.02
VRK3-216ENST00000599342 UQCRC2P22695 453 aa8.71□□□□□ -1.02
VRK3-216ENST00000599342 CHI3L1P36222 383 aaPredicted RBP8.71□□□□□ -1.02
VRK3-216ENST00000599342 SLC1A6P48664 564 aa8.71□□□□□ -1.02
VRK3-216ENST00000599342 KHKP50053 298 aa8.71□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 55.8 ms