RNA–Protein interactions for RNA: ENST00000594504.5

UPF1-203, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 559 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-203ENST00000594504 GTF2H4Q92759 462 aa11.22□□□□□ -0.61
UPF1-203ENST00000594504 SPDL1Q96EA4 605 aa11.22□□□□□ -0.61
UPF1-203ENST00000594504 HS3ST6Q96QI5 342 aa11.22□□□□□ -0.61
UPF1-203ENST00000594504 NPAS1Q99742 590 aa11.22□□□□□ -0.61
UPF1-203ENST00000594504 UBQLN4Q9NRR5 601 aa11.22□□□□□ -0.61
UPF1-203ENST00000594504 EXD2Q9NVH0 621 aa11.22□□□□□ -0.61
UPF1-203ENST00000594504 FBXO34Q9NWN3 711 aa11.22□□□□□ -0.61
UPF1-203ENST00000594504 KLHL14Q9P2G3 628 aa11.22□□□□□ -0.61
UPF1-203ENST00000594504 ALG1L2C9J202 215 aa11.21□□□□□ -0.61
UPF1-203ENST00000594504 TNFRSF21O75509 655 aa11.21□□□□□ -0.61
UPF1-203ENST00000594504 AQP8O94778 261 aa11.21□□□□□ -0.61
UPF1-203ENST00000594504 OXSR1O95747 527 aaPredicted RBP11.21□□□□□ -0.61
UPF1-203ENST00000594504 OPN1LWP04000 364 aa11.21□□□□□ -0.61
UPF1-203ENST00000594504 CRHP06850 196 aa11.21□□□□□ -0.61
UPF1-203ENST00000594504 OR12D1P0DN82 309 aa11.21□□□□□ -0.61
UPF1-203ENST00000594504 HPGDP15428 266 aa11.21□□□□□ -0.61
UPF1-203ENST00000594504 CCKARP32238 428 aa11.21□□□□□ -0.61
UPF1-203ENST00000594504 UGT2B10P36537 528 aa11.21□□□□□ -0.61
UPF1-203ENST00000594504 KCNJ5P48544 419 aa11.21□□□□□ -0.61
UPF1-203ENST00000594504 PON3Q15166 354 aa11.21□□□□□ -0.61
UPF1-203ENST00000594504 ARHGAP11BQ3KRB8 267 aa11.21□□□□□ -0.61
UPF1-203ENST00000594504 SHEQ5VZ18 495 aa11.21□□□□□ -0.61
UPF1-203ENST00000594504 OR2A2Q6IF42 318 aa11.21□□□□□ -0.61
UPF1-203ENST00000594504 HEPHL1Q6MZM0 1159 aa11.21□□□□□ -0.61
UPF1-203ENST00000594504 SLC2A7Q6PXP3 512 aa11.21□□□□□ -0.61
UPF1-203ENST00000594504 CLEC9AQ6UXN8 241 aa11.21□□□□□ -0.61
UPF1-203ENST00000594504 C16orf62Q7Z3J2 963 aa11.21□□□□□ -0.61
UPF1-203ENST00000594504 RNF130Q86XS8 419 aa11.21□□□□□ -0.61
UPF1-203ENST00000594504 P3H2Q8IVL5 708 aa11.21□□□□□ -0.61
UPF1-203ENST00000594504 ZFP90Q8TF47 636 aa11.21□□□□□ -0.61
UPF1-203ENST00000594504 XAGE5Q8WWM1 108 aa11.21□□□□□ -0.61
UPF1-203ENST00000594504 C1GALT1C1Q96EU7 318 aa11.21□□□□□ -0.61
UPF1-203ENST00000594504 SDF2Q99470 211 aa11.21□□□□□ -0.61
UPF1-203ENST00000594504 MED18Q9BUE0 208 aa11.21□□□□□ -0.61
UPF1-203ENST00000594504 HOXD1Q9GZZ0 328 aa11.21□□□□□ -0.61
UPF1-203ENST00000594504 UBTD1Q9HAC8 227 aa11.21□□□□□ -0.61
UPF1-203ENST00000594504 SLC52A3Q9NQ40 469 aa11.21□□□□□ -0.61
UPF1-203ENST00000594504 SLC6A13Q9NSD5 602 aa11.21□□□□□ -0.61
UPF1-203ENST00000594504 CLEC4AQ9UMR7 237 aa11.21□□□□□ -0.61
UPF1-203ENST00000594504 ABCA4P78363 2273 aa11.21□□□□□ -0.62
UPF1-203ENST00000594504 A0A096LPI6 279 aa11.2□□□□□ -0.62
UPF1-203ENST00000594504 IGLV3-32A0A0A0MS00 114 aa11.2□□□□□ -0.62
UPF1-203ENST00000594504 A0A1W2PP18 115 aa11.2□□□□□ -0.62
UPF1-203ENST00000594504 A0A1W2PQD3 144 aa11.2□□□□□ -0.62
UPF1-203ENST00000594504 HMGN4O00479 90 aa11.2□□□□□ -0.62
UPF1-203ENST00000594504 SCDO00767 359 aa11.2□□□□□ -0.62
UPF1-203ENST00000594504 STX11O75558 287 aa11.2□□□□□ -0.62
UPF1-203ENST00000594504 ANGPTL1O95841 491 aa11.2□□□□□ -0.62
UPF1-203ENST00000594504 LY6G6DO95868 133 aa11.2□□□□□ -0.62
UPF1-203ENST00000594504 GUSBP08236 651 aa11.2□□□□□ -0.62
UPF1-203ENST00000594504 CRYGSP22914 178 aa11.2□□□□□ -0.62
UPF1-203ENST00000594504 LOXP28300 417 aaPredicted RBP11.2□□□□□ -0.62
UPF1-203ENST00000594504 SLC6A8P48029 635 aa11.2□□□□□ -0.62
UPF1-203ENST00000594504 CASP9P55211 416 aa11.2□□□□□ -0.62
UPF1-203ENST00000594504 C17orf67Q0P5P2 114 aa11.2□□□□□ -0.62
UPF1-203ENST00000594504 ACKR1Q16570 336 aa11.2□□□□□ -0.62
UPF1-203ENST00000594504 SGCBQ16585 318 aa11.2□□□□□ -0.62
UPF1-203ENST00000594504 EXOC3L2Q2M3D2 409 aa11.2□□□□□ -0.62
UPF1-203ENST00000594504 Q5PR19 223 aa11.2□□□□□ -0.62
UPF1-203ENST00000594504 LRIF1Q5T3J3 769 aa11.2□□□□□ -0.62
UPF1-203ENST00000594504 PPP4R4Q6NUP7 873 aa11.2□□□□□ -0.62
UPF1-203ENST00000594504 MISPQ8IVT2 679 aa11.2□□□□□ -0.62
UPF1-203ENST00000594504 ZNF527Q8NB42 609 aa11.2□□□□□ -0.62
UPF1-203ENST00000594504 TSPEARQ8WU66 669 aa11.2□□□□□ -0.62
UPF1-203ENST00000594504 RAB8BQ92930 207 aa11.2□□□□□ -0.62
UPF1-203ENST00000594504 KLHDC3Q9BQ90 382 aa11.2□□□□□ -0.62
UPF1-203ENST00000594504 KLHL4Q9C0H6 718 aa11.2□□□□□ -0.62
UPF1-203ENST00000594504 NMUR2Q9GZQ4 415 aa11.2□□□□□ -0.62
UPF1-203ENST00000594504 ZNF350Q9GZX5 532 aa11.2□□□□□ -0.62
UPF1-203ENST00000594504 PAIP1Q9H074 479 aaKnown RBP11.2□□□□□ -0.62
UPF1-203ENST00000594504 PTGES2Q9H7Z7 377 aa11.2□□□□□ -0.62
UPF1-203ENST00000594504 RNF122Q9H9V4 155 aa11.2□□□□□ -0.62
UPF1-203ENST00000594504 TPT1P8Q9HAU6 139 aa11.2□□□□□ -0.62
UPF1-203ENST00000594504 POLE3Q9NRF9 147 aa11.2□□□□□ -0.62
UPF1-203ENST00000594504 ELOVL5Q9NYP7 299 aa11.2□□□□□ -0.62
UPF1-203ENST00000594504 VDAC3Q9Y277 283 aa11.2□□□□□ -0.62
UPF1-203ENST00000594504 PCDHB14Q9Y5E9 798 aa11.2□□□□□ -0.62
UPF1-203ENST00000594504 ITPR3Q14573 2671 aa11.19□□□□□ -0.62
UPF1-203ENST00000594504 NPIPB9F8W1W9 429 aa11.19□□□□□ -0.62
UPF1-203ENST00000594504 C16orf97H3BN30 126 aa11.19□□□□□ -0.62
UPF1-203ENST00000594504 SMAD7O15105 426 aaKnown RBP11.19□□□□□ -0.62
UPF1-203ENST00000594504 NDUFB5O43674 189 aa11.19□□□□□ -0.62
UPF1-203ENST00000594504 SMPD2O60906 423 aa11.19□□□□□ -0.62
UPF1-203ENST00000594504 C1QCP02747 245 aa11.19□□□□□ -0.62
UPF1-203ENST00000594504 HOXB9P17482 250 aaPredicted RBP11.19□□□□□ -0.62
UPF1-203ENST00000594504 ATP12AP54707 1039 aa11.19□□□□□ -0.62
UPF1-203ENST00000594504 EEFSECP57772 596 aaKnown RBP11.19□□□□□ -0.62
UPF1-203ENST00000594504 SF3A3Q12874 501 aaKnown RBP eCLIP11.19□□□□□ -0.625e-7■■■□□ 14.8
UPF1-203ENST00000594504 GANABQ14697 944 aaKnown RBP11.19□□□□□ -0.62
UPF1-203ENST00000594504 GTDC1Q4AE62 458 aa11.19□□□□□ -0.62
UPF1-203ENST00000594504 KLHL26Q53HC5 615 aa11.19□□□□□ -0.62
UPF1-203ENST00000594504 PAGE3Q5JUK9 113 aa11.19□□□□□ -0.62
UPF1-203ENST00000594504 AP1ARQ63HQ0 302 aa11.19□□□□□ -0.62
UPF1-203ENST00000594504 GATSQ8NAP1 163 aa11.19□□□□□ -0.62
UPF1-203ENST00000594504 PNPT1Q8TCS8 783 aaKnown RBP11.19□□□□□ -0.62
UPF1-203ENST00000594504 C10orf82Q8WW14 230 aa11.19□□□□□ -0.62
UPF1-203ENST00000594504 OIT3Q8WWZ8 545 aa11.19□□□□□ -0.62
UPF1-203ENST00000594504 ROPN1LQ96C74 230 aa11.19□□□□□ -0.62
UPF1-203ENST00000594504 PERPQ96FX8 193 aa11.19□□□□□ -0.62
UPF1-203ENST00000594504 AURKBQ96GD4 344 aaPredicted RBP11.19□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms